Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Reverse (-)

75145039 .. 75153028

Gene Structure 7990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG537200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAATTTGCGTGGTTGGTTCCGCCGTGTGGAATTATTATTACTACTGCAGCGTCTGGTTTTGTCTTTTGGTGGAAAGGCTTGAGCTTTTCTGATCCATATGGACAAGGGATCTTGATTACTGGTGGTGCGTGTATATTAGAACTATTGGCAGAGCCCTTGTATATCCTATCTCAAAACTTGCTGCTGCTTAAATTAAGGCTGGCAGTTGAAACTGCCGCTACTTTTTTTCGCTGCATAACAACAGCCATTCTCTTTGGCATGCGAGCTGACATGGAAAAAGAGATTATATTTGCATTGTCACAGACTGCTTATGGACTGTGCTTGTTCTCAGGGTATTGGGTCTACTTTCTTCGTTTTCGTCCATATAGAAGTTCTGCTCTTTTCCCCTTCAGAGCAAAGAATAAGAAGAATTATGATGGGGAGCTATTAAAGATGTGTGAGTTGTTTGCTTTGCAATCCTGTGTGAAATTGATCCTTCAGGAAGGACAAAATTTTGTTCTTTTACAGTGGGCAACATATTATAACCAAGCTGTATATGGATTTGTGGACAATTTAGGGAGCCTGGTGGTGAGGATGGTGTTTCTTCCTTTTGAAGAAAGTACCTATGCTACATTTGCAAGGTCTGCATCAGGAAAAGACCCAGATAAGGACAAGAGGTTGGGAGGTAGCCTTACAGAAGCCCTTAAGCTGGTTTTGTTAATAGGTCTTATATTTATGGCGTTTGGCCCGAGTTATGCTTATTCTCTCATCAGATTGGTGTATGGTCAAAAATGGAGTGATGGGGAAGCATCAACAGCCCTGGGATATTATTGCTTTTATATTATTGTTTTGGCTGTGAATGGAACTTCTGAAGCATTTGTACATGCAGTTGCCAAGAAGAACCAACTTCTGTGGTCAAATCTTCCATCTGTTCTGATAACAATTATATATGTGGTACTGAATATCCTGCTGGTAAACTCCGCTGGCGCAGTTGGCTTAATTTTGGCAAATTCATTAAGTATCCTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

337

Amino Acids

37.53

Weight (kDa)

8.83

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rft-1	PF04506	2 - 334	5.2e-86	Rft protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	3 cut(s)	23, 219, 963
AclWI	GGATC	3 cut(s)	89, 119, 469
AcsI	RAATTY	3 cut(s)	5, 493, 991
AcuI	CTGAAG	3 cut(s)	376, 464, 873
AfaI	GTAC	3 cut(s)	604, 864, 939
AfiI	CCNNNNNNNGG	3 cut(s)	29, 649, 691
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	212, 596
AjnI	CCWGG	2 cut(s)	564, 801
AluBI	AGCT	5 cut(s)	87, 269, 427, 533, 691
AluI	AGCT	5 cut(s)	87, 269, 427, 533, 691
AlwI	GGATC	3 cut(s)	89, 119, 469
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	730
AoxI	GGCC	1 cut(s)	727
ApeKI	GCWGC	4 cut(s)	50, 184, 187, 234
ApoI	RAATTY	3 cut(s)	5, 493, 991
AspLEI	GCGC	1 cut(s)	971
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	159
BarI	GAAGNNNNNNTAC	2 cut(s)	846, 878
BbvI	GCAGC	4 cut(s)	62, 171, 174, 221
BccI	CCATC	4 cut(s)	413, 571, 776, 916
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	566, 803
BciVI	GTATCC	1 cut(s)	1013
BfmI	CTRYAG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	1013
BisI	GCNGC	5 cut(s)	51, 185, 188, 219, 235
BlsI	GCNGC	5 cut(s)	52, 186, 189, 220, 236
Bme1390I	CCNGG	2 cut(s)	566, 803
BmeT110I	CYCGRG	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	2 cut(s)	21, 563
BmrFI	CCNGG	2 cut(s)	566, 803
BmsI	GCATC	2 cut(s)	638, 800
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	801, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 649, 691
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	566, 803
BseDI	CCNNGG	2 cut(s)	801, 802
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	29, 649, 691
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	62, 171, 174, 221
BshFI	GGCC	1 cut(s)	729
BsiHKCI	CYCGRG	1 cut(s)	730
BslI	CCNNNNNNNGG	3 cut(s)	29, 649, 691
BsnI	GGCC	1 cut(s)	729
BsoBI	CYCGRG	1 cut(s)	730
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	862
Bsp143I	GATC	3 cut(s)	94, 111, 474
BspACI	CCGC	3 cut(s)	23, 219, 963
BspANI	GGCC	1 cut(s)	729
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	21, 563
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	3 cut(s)	89, 119, 469
BspTI	CTTAAG	1 cut(s)	686
BsrGI	TGTACA	1 cut(s)	862
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	801, 802
BssMI	GATC	3 cut(s)	94, 111, 474
Bst2UI	CCWGG	2 cut(s)	566, 803
Bst4CI	ACNGT	2 cut(s)	321, 510
BstAFI	CTTAAG	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstAUI	TGTACA	1 cut(s)	862
BstC8I	GCNNGC	4 cut(s)	204, 263, 267, 967
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	971
BstKTI	GATC	3 cut(s)	97, 114, 477
BstMBI	GATC	3 cut(s)	94, 111, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	617, 626, 797, 975
BstNI	CCWGG	2 cut(s)	566, 803
BstNSI	RCATGY	2 cut(s)	265, 869
BstSCI	CCNGG	2 cut(s)	564, 801
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	62, 171, 174, 221
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	1013
BsuRI	GGCC	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	4 cut(s)	204, 263, 267, 967
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	971
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	603, 863, 938
CspCI	CAANNNNNGTGG	2 cut(s)	875, 910
CviAII	CATG	3 cut(s)	262, 274, 866
CviQI	GTAC	3 cut(s)	603, 863, 938
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	96, 113, 476
DpnII	GATC	3 cut(s)	94, 111, 474
EciI	GGCGGA	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	376, 464, 873
Eco88I	CYCGRG	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	564, 801
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	3 cut(s)	265, 277, 869
FatI	CATG	3 cut(s)	261, 273, 865
FauNDI	CATATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	51, 185, 188, 219, 235
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	5 cut(s)	51, 185, 188, 219, 235
GlaI	GCGC	1 cut(s)	970
GluI	GCNGC	5 cut(s)	51, 185, 188, 219, 235
HaeIII	GGCC	1 cut(s)	729
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	971
Hin1II	CATG	3 cut(s)	265, 277, 869
Hin6I	GCGC	1 cut(s)	969
HinP1I	GCGC	1 cut(s)	969
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	3 cut(s)	346, 550, 958
Hpy188I	TCNGA	5 cut(s)	94, 395, 755, 853, 918
Hpy188III	TCNNGA	3 cut(s)	115, 482, 633
Hpy8I	GTNNAC	3 cut(s)	346, 550, 958
HpyAV	CCTTC	3 cut(s)	400, 479, 488
HpyCH4III	ACNGT	2 cut(s)	321, 510
HpyCH4V	TGCA	7 cut(s)	50, 237, 296, 457, 620, 629, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	617, 626, 797, 975
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	265, 277, 869
HspAI	GCGC	1 cut(s)	969
Kzo9I	GATC	3 cut(s)	94, 111, 474
LmnI	GCTCC	2 cut(s)	424, 561
Lsp1109I	GCAGC	4 cut(s)	62, 171, 174, 221
LweI	GCATC	2 cut(s)	638, 800
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	3 cut(s)	96, 113, 476
MboI	GATC	3 cut(s)	94, 111, 474
MboII	GAAGA	6 cut(s)	344, 421, 578, 608, 892, 896
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	567, 651, 659
MseI	TTAA	7 cut(s)	192, 197, 431, 687, 701, 980, 998
MspA1I	CMGCKG	1 cut(s)	965
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	566, 803
MvaI	CCWGG	2 cut(s)	566, 803
MwoI	GCNNNNNNNGC	4 cut(s)	617, 626, 797, 975
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	3 cut(s)	94, 111, 474
NlaIII	CATG	3 cut(s)	265, 277, 869
NlaIV	GGNNCC	2 cut(s)	21, 563
NmuCI	GTSAC	1 cut(s)	300
NspI	RCATGY	2 cut(s)	265, 869
PaeI	GCATGC	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	802
PkrI	GCNGC	5 cut(s)	52, 186, 189, 220, 236
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	564, 801
PspGI	CCWGG	2 cut(s)	564, 801
PspN4I	GGNNCC	2 cut(s)	21, 563
PspPI	GGNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	3 cut(s)	604, 864, 939
RsaNI	GTAC	3 cut(s)	603, 863, 938
SaqAI	TTAA	7 cut(s)	192, 197, 431, 687, 701, 980, 998
SatI	GCNGC	5 cut(s)	51, 185, 188, 219, 235
Sau3AI	GATC	3 cut(s)	94, 111, 474
Sau96I	GGNCC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	566, 803
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	638, 800
SfcI	CTRYAG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	82, 686
SmoI	CTYRAG	2 cut(s)	82, 686
SphI	GCATGC	1 cut(s)	265
SsiI	CCGC	3 cut(s)	23, 219, 963
StyD4I	CCNGG	2 cut(s)	564, 801
TaaI	ACNGT	2 cut(s)	321, 510
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	7 cut(s)	192, 197, 431, 687, 701, 980, 998
Tru9I	TTAA	7 cut(s)	192, 197, 431, 687, 701, 980, 998
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	4 cut(s)	50, 184, 187, 234
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	17, 984
TspRI	CASTG	1 cut(s)	515
Vha464I	CTTAAG	1 cut(s)	686
XapI	RAATTY	3 cut(s)	5, 493, 991
XceI	RCATGY	2 cut(s)	265, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.