Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004995

Physical Location & Seq

Genomic Coordinates Reverse (-)

2550741 .. 2554143

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G033600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGGCTGTAGTGGGAAAGGGCGATTCCCCTAGACAGTTTTCAATCCATGAAACGAAGCTAGAGGCCAAAATGGTTGAAGCTATGAAGCGCAGAGCAGTTAAAGGAAGTGTTATGAAATCGTTTGACAGCCTCATCTTGAAGTTTCGAAAGATTGACGAAAGCTTAAGAAAGTGCAAGGCTATTTTTGAGCAATTTGATGAGGATTCAAATGGCGCAATCGATCAAGAAGAGATGAAAAAATGTTTTTATAAACTGGAAGTCTCTTTTACAGATGAGGAAATCAGTGATCTCTTTGAGGCATGTGATATTAATGAGGACATGGGTATCAAGTTTAATGAGTTCATTGTTCTTATTTGCCTAGTATATCTTCTCAAGGATGACAGTAATGACGTTCACACTAAATTGCATATGGAAATGCCAGATCTGGAGGCGACATTCGAAACATTGGTAGACGCATTTGTGTTCTTGGATAAGAACAAGGATGGTTATGTCAGCAAGAGTGAAATGGTCCAGGCCATTAATGAAACTACAACAGGAGAACGATCCTCTGGCCGAATAGCCATGAAAAGATTTGAAGAGATGGACTGGGACAAAAATGGAATGGTGAACTTCAAGGAGTTTCTGTTTGCATTTACCCGATGGATCGGAATTGACGATCTAGAGGACGAGGATGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

228

Amino Acids

26.28

Weight (kDa)

4.62

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26470 AT4G26470 AT4G26470
fragaria_vesca	FvH4_3g41720 FvH4_3g41720 FvH4_3g41720 FvH4_3g41720
malus_domestica	MD03G1041500.v1.1 MD11G1042400.v1.1
prunus_persica	Prupe.6G033600_v2.0.a1 Prupe.6G033600_v2.0.a1
pyrus_communis	pycom03g03220 pycom11g03650
rosa_chinensis	RchiOBHm_Chr5g0074811
rosa_laevigata	RLG00000036507
rosa_multiflora	Rmu_co8378831.1_g000001 Rmu_sc0000909.1_g000003 Rmu_sc0005365.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006760
rosa_rugosa	Rorug05G0434000 Rorug05G0434100 Rorug05G0434100 Rorug05G0434200 Rorug05G0434300 Rorug05G0434400
rosa_samantha	Rh5AG491900 Rh5BG513300 Rh5CG537000 Rh5DG525400
rosa_wichuraiana	Rw5G045570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	540, 653
AcoI	YGGCCR	1 cut(s)	553
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	6 cut(s)	45, 80, 142, 210, 578, 616
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	3 cut(s)	61, 83, 165
AluI	AGCT	3 cut(s)	61, 83, 165
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	540, 653
AoxI	GGCC	3 cut(s)	66, 516, 553
AseI	ATTAAT	2 cut(s)	312, 522
AspLEI	GCGC	2 cut(s)	93, 218
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	619
AsuII	TTCGAA	2 cut(s)	148, 441
AvaII	GGWCC	1 cut(s)	511
BaeI	ACNNNNGTAYC	2 cut(s)	310, 343
BccI	CCATC	3 cut(s)	479, 577, 636
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	4 cut(s)	33, 62, 362, 662
BfmI	CTRYAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	166
BglII	AGATCT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	2 cut(s)	148, 441
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bse1I	ACTGG	2 cut(s)	261, 593
BseBI	CCWGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	3 cut(s)	385, 490, 679
BseNI	ACTGG	2 cut(s)	261, 593
BshFI	GGCC	3 cut(s)	68, 518, 555
BshVI	ATCGAT	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	68, 518, 555
Bsp119I	TTCGAA	2 cut(s)	148, 441
Bsp143I	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
BspANI	GGCC	3 cut(s)	68, 518, 555
BspDI	ATCGAT	1 cut(s)	222
BspPI	GGATC	2 cut(s)	540, 653
BspT104I	TTCGAA	2 cut(s)	148, 441
BspTI	CTTAAG	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	261, 593
BssMI	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	39, 386
Bst6I	CTCTTC	2 cut(s)	225, 573
BstAFI	CTTAAG	1 cut(s)	166
BstBI	TTCGAA	2 cut(s)	148, 441
BstF5I	GGATG	3 cut(s)	385, 490, 679
BstHHI	GCGC	2 cut(s)	93, 218
BstKTI	GATC	6 cut(s)	226, 292, 427, 548, 648, 661
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	68, 518, 555
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	385, 490, 679
BtsIMutI	CAGTG	1 cut(s)	292
CfoI	GCGC	2 cut(s)	93, 218
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	464
CviAII	CATG	4 cut(s)	50, 303, 322, 565
DpnI	GATC	6 cut(s)	225, 291, 426, 547, 647, 660
DpnII	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	225, 573
EarI	CTCTTC	2 cut(s)	225, 573
Eco47I	GGWCC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	53, 306, 325, 568
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	4 cut(s)	49, 302, 321, 564
FauNDI	CATATG	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	453
FokI	GGATG	2 cut(s)	392, 497
FspBI	CTAG	4 cut(s)	33, 62, 362, 662
GlaI	GCGC	2 cut(s)	92, 217
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	68, 518, 555
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	2 cut(s)	93, 218
Hin1II	CATG	4 cut(s)	53, 306, 325, 568
Hin6I	GCGC	2 cut(s)	91, 216
HinP1I	GCGC	2 cut(s)	91, 216
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	26, 206
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	397, 454, 610
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	4 cut(s)	139, 227, 428, 662
Hpy8I	GTNNAC	3 cut(s)	397, 454, 610
HpyCH4III	ACNGT	2 cut(s)	39, 386
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	177, 409, 632
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	53, 306, 325, 568
HspAI	GCGC	2 cut(s)	91, 216
Kzo9I	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
LpnPI	CCDG	8 cut(s)	242, 413, 435, 500, 522, 527, 537, 574
MaeI	CTAG	4 cut(s)	33, 62, 362, 662
MaeII	ACGT	1 cut(s)	393
MalI	GATC	6 cut(s)	225, 291, 426, 547, 647, 660
MboI	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
MboII	GAAGA	3 cut(s)	242, 362, 590
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	194, 404, 651
MseI	TTAA	5 cut(s)	102, 167, 312, 336, 522
MspCI	CTTAAG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
NlaIII	CATG	4 cut(s)	53, 306, 325, 568
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	2 cut(s)	148, 441
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	26, 206
PshBI	ATTAAT	2 cut(s)	312, 522
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	5 cut(s)	102, 167, 312, 336, 522
Sau3AI	GATC	6 cut(s)	223, 289, 424, 545, 645, 658
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	4 cut(s)	63, 85, 167, 396
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	2 cut(s)	148, 441
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	166, 374
SmoI	CTYRAG	2 cut(s)	166, 374
Sse9I	AATT	3 cut(s)	194, 404, 651
SspMI	CTAG	4 cut(s)	33, 62, 362, 662
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	39, 386
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	148, 222, 441
TasI	AATT	3 cut(s)	194, 404, 651
TfiI	GAWTC	2 cut(s)	26, 206
Tru1I	TTAA	5 cut(s)	102, 167, 312, 336, 522
Tru9I	TTAA	5 cut(s)	102, 167, 312, 336, 522
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	7 cut(s)	66, 101, 131, 251, 334, 540, 581
TspRI	CASTG	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	2 cut(s)	312, 522
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	4 cut(s)	33, 62, 362, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.