Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378831.1

Orthogroup ID

OG0004995

Physical Location & Seq

Genomic Coordinates Forward (+)

328 .. 1157

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 574 bp

atgggggctgtagtgggaaaggccaatagtgggagtctttcgatatctgaaacaaagctggaagccaaaatggttgaagctatgcagcgaagagcagctaaaggaagtgtcatgaaatcattcaacagcataatcttgaagttcccaaagattgatgagagcttaagaaattgcaaagatatttttcagcagtttgatgaggattcaaatggcatcattgatcatgatgaattgaaaagagctttctcaaaactggaagtctcgtttacagatgaggaaatcgatgatctctttgcagcatgcgatattaatgaggatatgggaatcaattttaatgagttcatcgttcttatttgcgtcgtctttcttctgaaggatgatcagaatgctggccaaaaaaaagtggatatgggaatgccaaggctggaggccaccttcgaaacattggtggatgcatttgtgttcttggataagaacaaggatggttatgtcagcaagagtgaaatggttcagtccattaatgaaactacgacaggagaacgctcctctgggcgaatagccatgaaaagatttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

191

Amino Acids

21.42

Weight (kDa)

4.84

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26470 AT4G26470 AT4G26470
fragaria_vesca	FvH4_3g41720 FvH4_3g41720 FvH4_3g41720 FvH4_3g41720
malus_domestica	MD03G1041500.v1.1 MD11G1042400.v1.1
prunus_persica	Prupe.6G033600_v2.0.a1 Prupe.6G033600_v2.0.a1
pyrus_communis	pycom03g03220 pycom11g03650
rosa_chinensis	RchiOBHm_Chr5g0074811
rosa_laevigata	RLG00000036507
rosa_multiflora	Rmu_co8378831.1_g000001 Rmu_sc0000909.1_g000003 Rmu_sc0005365.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006760
rosa_rugosa	Rorug05G0434000 Rorug05G0434100 Rorug05G0434100 Rorug05G0434200 Rorug05G0434300 Rorug05G0434400
rosa_samantha	Rh5AG491900 Rh5BG513300 Rh5CG537000 Rh5DG525400
rosa_wichuraiana	Rw5G045570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	77, 124, 139, 207, 235
AluBI	AGCT	5 cut(s)	58, 80, 98, 162, 242
AluI	AGCT	5 cut(s)	58, 80, 98, 162, 242
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	3 cut(s)	21, 391, 429
ApeKI	GCWGC	3 cut(s)	85, 95, 296
AseI	ATTAAT	2 cut(s)	309, 519
Asp700I	GAANNNNTTC	2 cut(s)	119, 507
AsuII	TTCGAA	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	97, 107, 308
BccI	CCATC	1 cut(s)	476
BclI	TGATCA	2 cut(s)	220, 379
BcoDI	GTCTC	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	3 cut(s)	86, 96, 297
BlsI	GCNGC	3 cut(s)	87, 97, 298
BmsI	GCATC	2 cut(s)	222, 442
BpmI	CTGGAG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	3 cut(s)	382, 457, 487
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	3 cut(s)	97, 107, 308
BshFI	GGCC	3 cut(s)	23, 393, 431
BshVI	ATCGAT	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	2 cut(s)	391, 420
BsnI	GGCC	3 cut(s)	23, 393, 431
Bsp119I	TTCGAA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	220, 286, 379
BspANI	GGCC	3 cut(s)	23, 393, 431
BspDI	ATCGAT	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	111, 223
BspQI	GCTCTTC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	220, 286, 379
BssT1I	CCWWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	301, 391
BstF5I	GGATG	3 cut(s)	382, 457, 487
BstKTI	GATC	3 cut(s)	223, 289, 382
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	220, 286, 379
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	97, 107, 308
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	23, 393, 431
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	382, 457, 487
Cac8I	GCNNGC	2 cut(s)	301, 391
CciI	TCATGA	2 cut(s)	111, 223
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	346
CviAII	CATG	4 cut(s)	112, 224, 300, 562
DpnI	GATC	3 cut(s)	222, 288, 381
DpnII	GATC	3 cut(s)	220, 286, 379
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	115, 227, 303, 565
FaiI	YATR	9 cut(s)	83, 113, 131, 225, 301, 320, 410, 489, 563
FatI	CATG	4 cut(s)	111, 223, 299, 561
FbaI	TGATCA	2 cut(s)	220, 379
Fnu4HI	GCNGC	3 cut(s)	86, 96, 297
FokI	GGATG	3 cut(s)	389, 464, 494
Fsp4HI	GCNGC	3 cut(s)	86, 96, 297
GluI	GCNGC	3 cut(s)	86, 96, 297
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	3 cut(s)	23, 393, 431
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	115, 227, 303, 565
HinfI	GANTC	3 cut(s)	34, 203, 324
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	3 cut(s)	49, 372, 384
Hpy188III	TCNNGA	3 cut(s)	112, 136, 224
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	367, 445
HpyCH4V	TGCA	4 cut(s)	85, 174, 296, 455
Hsp92II	CATG	4 cut(s)	115, 227, 303, 565
Ksp22I	TGATCA	2 cut(s)	220, 379
Kzo9I	GATC	3 cut(s)	220, 286, 379
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	548
LpnPI	CCDG	6 cut(s)	44, 239, 375, 410, 519, 534
Lsp1109I	GCAGC	3 cut(s)	97, 107, 308
LweI	GCATC	2 cut(s)	222, 442
MalI	GATC	3 cut(s)	222, 288, 381
MboI	GATC	3 cut(s)	220, 286, 379
MboII	GAAGA	2 cut(s)	102, 359
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	169, 230, 328
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	193, 268, 307, 421, 556
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	2 cut(s)	119, 507
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	4 cut(s)	164, 309, 333, 519
Msp20I	TGGCCA	1 cut(s)	393
MspCI	CTTAAG	1 cut(s)	163
Mva1269I	GAATGC	2 cut(s)	391, 420
NdeII	GATC	3 cut(s)	220, 286, 379
NlaIII	CATG	4 cut(s)	115, 227, 303, 565
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	303
NspV	TTCGAA	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	303
PagI	TCATGA	2 cut(s)	111, 223
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	2 cut(s)	391, 420
PdmI	GAANNNNTTC	2 cut(s)	119, 507
PfeI	GAWTC	2 cut(s)	203, 324
PkrI	GCNGC	3 cut(s)	87, 97, 298
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PshBI	ATTAAT	2 cut(s)	309, 519
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	164, 309, 333, 519
SatI	GCNGC	3 cut(s)	86, 96, 297
Sau3AI	GATC	3 cut(s)	220, 286, 379
SchI	GAGTC	1 cut(s)	43
SetI	ASST	6 cut(s)	60, 82, 100, 164, 244, 437
SfaNI	GCATC	2 cut(s)	222, 442
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	3 cut(s)	169, 230, 328
StyI	CCWWGG	1 cut(s)	419
TaqI	TCGA	3 cut(s)	41, 282, 438
TasI	AATT	3 cut(s)	169, 230, 328
TfiI	GAWTC	2 cut(s)	203, 324
Tru1I	TTAA	4 cut(s)	164, 309, 333, 519
Tru9I	TTAA	4 cut(s)	164, 309, 333, 519
TseI	GCWGC	3 cut(s)	85, 95, 296
TspDTI	ATGAA	4 cut(s)	128, 243, 331, 537
Vha464I	CTTAAG	1 cut(s)	163
VspI	ATTAAT	2 cut(s)	309, 519
XceI	RCATGY	1 cut(s)	303
XmnI	GAANNNNTTC	2 cut(s)	119, 507
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.