CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 |
| malus_domestica | MD03G1051600.v1.1 MD11G1053500.v1.1 MD11G1053700.v1.1 |
| prunus_persica | Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 |
| pyrus_communis | pycom03g04100 pycom11g04330 |
| rosa_chinensis | RchiOBHm_Chr5g0073201 |
| rosa_laevigata | RLG00000036373 |
| rosa_multiflora | Rmu_sc0001887.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00007990 |
| rosa_rugosa | Rorug05G0422000 Rorug05G0422100 |
| rosa_samantha | Rh5AG478900 Rh5BG499600 Rh5CG522800 Rh5DG511700 |
| rosa_wichuraiana | Rw5G044520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1129 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2361 |
| Acc16I | TGCGCA | 1 cut(s) | 2489 |
| Acc36I | ACCTGC | 3 cut(s) | 1129, 1250, 2807 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 578, 1634, 1994, 2408 |
| AciI | CCGC | 9 cut(s) | 111, 155, 190, 1132, 1466, 2074, 2368, 2667, 2900 |
| AclWI | GGATC | 7 cut(s) | 292, 589, 669, 682, 1490, 1676, 1689 |
| AcoI | YGGCCR | 2 cut(s) | 1163, 1394 |
| AcsI | RAATTY | 5 cut(s) | 146, 1210, 1801, 1964, 2125 |
| AcuI | CTGAAG | 2 cut(s) | 1146, 2700 |
| AcyI | GRCGYC | 1 cut(s) | 2866 |
| AdeI | CACNNNGTG | 1 cut(s) | 2408 |
| AfaI | GTAC | 4 cut(s) | 562, 702, 2245, 2259 |
| AflIII | ACRYGT | 1 cut(s) | 2114 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1485 |
| AjiI | CACGTC | 1 cut(s) | 2363 |
| AjnI | CCWGG | 7 cut(s) | 240, 712, 1054, 1498, 1591, 2283, 2371 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 849, 881 |
| AluBI | AGCT | 8 cut(s) | 116, 270, 1186, 1737, 1879, 2645, 2846, 2894 |
| AluI | AGCT | 8 cut(s) | 116, 270, 1186, 1737, 1879, 2645, 2846, 2894 |
| Alw26I | GTCTC | 4 cut(s) | 223, 1070, 2026, 2755 |
| AlwI | GGATC | 7 cut(s) | 292, 589, 669, 682, 1490, 1676, 1689 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1634 |
| Ama87I | CYCGRG | 1 cut(s) | 1924 |
| AoxI | GGCC | 9 cut(s) | 68, 1028, 1115, 1163, 1333, 1394, 1651, 1818, 1832 |
| ApaI | GGGCCC | 1 cut(s) | 1822 |
| ApoI | RAATTY | 5 cut(s) | 146, 1210, 1801, 1964, 2125 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1258, 1290 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1335, 1869, 2183 |
| AspLEI | GCGC | 3 cut(s) | 2148, 2469, 2490 |
| AspS9I | GGNCC | 5 cut(s) | 6, 1555, 1818, 1819, 1832 |
| AsuC2I | CCSGG | 1 cut(s) | 1650 |
| AsuHPI | GGTGA | 7 cut(s) | 491, 1481, 1637, 1679, 2339, 2357, 2936 |
| AvaI | CYCGRG | 1 cut(s) | 1924 |
| AvaII | GGWCC | 2 cut(s) | 6, 1555 |
| BaeGI | GKGCMC | 2 cut(s) | 791, 1822 |
| BalI | TGGCCA | 1 cut(s) | 1396 |
| BamHI | GGATCC | 2 cut(s) | 674, 1681 |
| BanII | GRGCYC | 3 cut(s) | 1822, 1986, 2050 |
| BauI | CACGAG | 1 cut(s) | 291 |
| BbsI | GAAGAC | 1 cut(s) | 2186 |
| BbvCI | CCTCAGC | 2 cut(s) | 1299, 1880 |
| BccI | CCATC | 9 cut(s) | 102, 580, 688, 722, 815, 866, 917, 968, 1718 |
| BceAI | ACGGC | 3 cut(s) | 637, 1597, 2480 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1521, 1555 |
| BciT130I | CCWGG | 7 cut(s) | 242, 714, 1056, 1500, 1593, 2285, 2373 |
| BciVI | GTATCC | 2 cut(s) | 502, 2128 |
| BclI | TGATCA | 1 cut(s) | 1177 |
| BcnI | CCSGG | 1 cut(s) | 1650 |
| BcoDI | GTCTC | 4 cut(s) | 223, 1070, 2026, 2755 |
| BfaI | CTAG | 5 cut(s) | 1026, 1251, 1544, 1611, 2289 |
| BfmI | CTRYAG | 5 cut(s) | 178, 349, 1187, 1784, 2770 |
| BfoI | RGCGCY | 2 cut(s) | 2149, 2470 |
| BfuAI | ACCTGC | 3 cut(s) | 1129, 1250, 2807 |
| BfuI | GTATCC | 2 cut(s) | 502, 2128 |
| BglII | AGATCT | 1 cut(s) | 2003 |
| Bme1390I | CCNGG | 8 cut(s) | 242, 714, 1056, 1500, 1593, 1650, 2285, 2373 |
| Bme18I | GGWCC | 2 cut(s) | 6, 1555 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1485 |
| BmeT110I | CYCGRG | 1 cut(s) | 1924 |
| BmgBI | CACGTC | 1 cut(s) | 2363 |
| BmgT120I | GGNCC | 5 cut(s) | 6, 1555, 1818, 1819, 1832 |
| BmiI | GGNNCC | 7 cut(s) | 7, 676, 1557, 1683, 1820, 2344, 2827 |
| BmrFI | CCNGG | 8 cut(s) | 242, 714, 1056, 1500, 1593, 1650, 2285, 2373 |
| BmrI | ACTGGG | 1 cut(s) | 1982 |
| BmsI | GCATC | 6 cut(s) | 200, 1246, 1541, 2269, 2475, 2917 |
| BmuI | ACTGGG | 1 cut(s) | 1982 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2869 |
| BpiI | GAAGAC | 1 cut(s) | 2186 |
| BpmI | CTGGAG | 3 cut(s) | 1221, 1521, 1895 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1299, 1880 |
| BpuMI | CCSGG | 1 cut(s) | 1650 |
| BsaBI | GATNNNNATC | 1 cut(s) | 679 |
| BsaHI | GRCGYC | 1 cut(s) | 2866 |
| BsaJI | CCNNGG | 6 cut(s) | 713, 1166, 1592, 1648, 2283, 2371 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2298, 2328, 2735, 2765 |
| Bse1I | ACTGG | 4 cut(s) | 1166, 1639, 1793, 1988 |
| Bse3DI | GCAATG | 1 cut(s) | 2449 |
| Bse8I | GATNNNNATC | 1 cut(s) | 679 |
| BseBI | CCWGG | 7 cut(s) | 242, 714, 1056, 1500, 1593, 2285, 2373 |
| BseDI | CCNNGG | 6 cut(s) | 713, 1166, 1592, 1648, 2283, 2371 |
| BseJI | GATNNNNATC | 1 cut(s) | 679 |
| BseMI | GCAATG | 1 cut(s) | 2449 |
| BseMII | CTCAG | 8 cut(s) | 485, 581, 662, 1290, 1871, 2019, 2337, 2543 |
| BseNI | ACTGG | 4 cut(s) | 1166, 1639, 1793, 1988 |
| BseRI | GAGGAG | 2 cut(s) | 1985, 2180 |
| BseSI | GKGCMC | 2 cut(s) | 791, 1822 |
| BsgI | GTGCAG | 3 cut(s) | 2142, 2362, 2729 |
| BshFI | GGCC | 9 cut(s) | 70, 1030, 1117, 1165, 1335, 1396, 1653, 1820, 1834 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1924 |
| BsiSI | CCGG | 1 cut(s) | 1650 |
| BslFI | GGGAC | 2 cut(s) | 188, 2921 |
| BsmAI | GTCTC | 4 cut(s) | 223, 1070, 2026, 2755 |
| BsmFI | GGGAC | 2 cut(s) | 188, 2921 |
| BsmI | GAATGC | 2 cut(s) | 2394, 2530 |
| BsnI | GGCC | 9 cut(s) | 70, 1030, 1117, 1165, 1335, 1396, 1653, 1820, 1834 |
| BsoBI | CYCGRG | 1 cut(s) | 1924 |
| Bsp120I | GGGCCC | 1 cut(s) | 1818 |
| Bsp1286I | GDGCHC | 4 cut(s) | 791, 1822, 1986, 2050 |
| Bsp1407I | TGTACA | 1 cut(s) | 700 |
| BspACI | CCGC | 9 cut(s) | 111, 155, 190, 1132, 1466, 2074, 2368, 2667, 2900 |
| BspANI | GGCC | 9 cut(s) | 70, 1030, 1117, 1165, 1335, 1396, 1653, 1820, 1834 |
| BspCNI | CTCAG | 8 cut(s) | 484, 580, 661, 1291, 1872, 2020, 2336, 2542 |
| BspHI | TCATGA | 2 cut(s) | 1960, 2481 |
| BspLI | GGNNCC | 7 cut(s) | 7, 676, 1557, 1683, 1820, 2344, 2827 |
| BspMAI | CTGCAG | 3 cut(s) | 182, 1191, 1788 |
| BspMI | ACCTGC | 3 cut(s) | 1129, 1250, 2807 |
| BspPI | GGATC | 7 cut(s) | 292, 589, 669, 682, 1490, 1676, 1689 |
| BsrDI | GCAATG | 1 cut(s) | 2449 |
| BsrGI | TGTACA | 1 cut(s) | 700 |
| BsrI | ACTGG | 4 cut(s) | 1166, 1639, 1793, 1988 |
| BssECI | CCNNGG | 6 cut(s) | 713, 1166, 1592, 1648, 2283, 2371 |
| BssNI | GRCGYC | 1 cut(s) | 2866 |
| BssSI | CACGAG | 1 cut(s) | 291 |
| Bst2BI | CACGAG | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 7 cut(s) | 242, 714, 1056, 1500, 1593, 2285, 2373 |
| Bst4CI | ACNGT | 9 cut(s) | 206, 370, 400, 1230, 1449, 1477, 2243, 2458, 2912 |
| Bst6I | CTCTTC | 7 cut(s) | 727, 772, 820, 871, 973, 1808, 1994 |
| BstACI | GRCGYC | 1 cut(s) | 2866 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 186, 2391, 2448, 2525 |
| BstAUI | TGTACA | 1 cut(s) | 700 |
| BstDEI | CTNAG | 9 cut(s) | 471, 567, 648, 1299, 1880, 2028, 2198, 2323, 2529 |
| BstEII | GGTNACC | 1 cut(s) | 1643 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 474, 1125, 2731 |
| BstH2I | RGCGCY | 2 cut(s) | 2149, 2470 |
| BstHHI | GCGC | 3 cut(s) | 2148, 2469, 2490 |
| BstMAI | GTCTC | 4 cut(s) | 223, 1070, 2026, 2755 |
| BstNI | CCWGG | 7 cut(s) | 242, 714, 1056, 1500, 1593, 2285, 2373 |
| BstNSI | RCATGY | 5 cut(s) | 1296, 1697, 2118, 2436, 2442 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2869 |
| BstPI | GGTNACC | 1 cut(s) | 1643 |
| BstSCI | CCNGG | 8 cut(s) | 240, 712, 1054, 1498, 1591, 1648, 2283, 2371 |
| BstSFI | CTRYAG | 5 cut(s) | 178, 349, 1187, 1784, 2770 |
| BstSLI | GKGCMC | 2 cut(s) | 791, 1822 |
| BstV2I | GAAGAC | 1 cut(s) | 2186 |
| BstX2I | RGATCY | 4 cut(s) | 674, 1495, 1681, 2003 |
| BstYI | RGATCY | 4 cut(s) | 674, 1495, 1681, 2003 |
| BsuI | GTATCC | 2 cut(s) | 502, 2128 |
| BsuRI | GGCC | 9 cut(s) | 70, 1030, 1117, 1165, 1335, 1396, 1653, 1820, 1834 |
| BtgZI | GCGATG | 1 cut(s) | 2070 |
| BtrI | CACGTC | 1 cut(s) | 2363 |
| BtsI | GCAGTG | 1 cut(s) | 2013 |
| BtsIMutI | CAGTG | 4 cut(s) | 202, 1226, 1800, 2013 |
| BveI | ACCTGC | 3 cut(s) | 1129, 1250, 2807 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1634 |
| CciI | TCATGA | 2 cut(s) | 1960, 2481 |
| CfoI | GCGC | 3 cut(s) | 2148, 2469, 2490 |
| Cfr13I | GGNCC | 5 cut(s) | 6, 1555, 1818, 1819, 1832 |
| CseI | GACGC | 2 cut(s) | 2753, 2874 |
| CsiI | ACCWGGT | 1 cut(s) | 1054 |
| Csp6I | GTAC | 4 cut(s) | 561, 701, 2244, 2258 |
| CviQI | GTAC | 4 cut(s) | 561, 701, 2244, 2258 |
| DdeI | CTNAG | 9 cut(s) | 471, 567, 648, 1299, 1880, 2028, 2198, 2323, 2529 |
| DraI | TTTAAA | 1 cut(s) | 2217 |
| DraIII | CACNNNGTG | 1 cut(s) | 2408 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2361 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1485 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2361 |
| EaeI | YGGCCR | 2 cut(s) | 1163, 1394 |
| Eam1104I | CTCTTC | 7 cut(s) | 727, 772, 820, 871, 973, 1808, 1994 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1485 |
| EarI | CTCTTC | 7 cut(s) | 727, 772, 820, 871, 973, 1808, 1994 |
| EciI | GGCGGA | 1 cut(s) | 2089 |
| Eco147I | AGGCCT | 2 cut(s) | 1030, 1335 |
| Eco24I | GRGCYC | 3 cut(s) | 1822, 1986, 2050 |
| Eco47I | GGWCC | 2 cut(s) | 6, 1555 |
| Eco57I | CTGAAG | 2 cut(s) | 1146, 2700 |
| Eco88I | CYCGRG | 1 cut(s) | 1924 |
| Eco91I | GGTNACC | 1 cut(s) | 1643 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 474, 1125, 2731 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1555, 1818 |
| EcoO65I | GGTNACC | 1 cut(s) | 1643 |
| EcoRI | GAATTC | 2 cut(s) | 1210, 1801 |
| EcoRII | CCWGG | 7 cut(s) | 240, 712, 1054, 1498, 1591, 2283, 2371 |
| EcoT22I | ATGCAT | 3 cut(s) | 215, 1860, 2396 |
| EcoT38I | GRGCYC | 3 cut(s) | 1822, 1986, 2050 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 399, 431, 2871, 2903 |
| FaqI | GGGAC | 2 cut(s) | 188, 2921 |
| FauI | CCCGC | 3 cut(s) | 148, 1125, 1459 |
| FauNDI | CATATG | 2 cut(s) | 121, 2598 |
| FbaI | TGATCA | 1 cut(s) | 1177 |
| FriOI | GRGCYC | 3 cut(s) | 1822, 1986, 2050 |
| FspBI | CTAG | 5 cut(s) | 1026, 1251, 1544, 1611, 2289 |
| FspI | TGCGCA | 1 cut(s) | 2489 |
| GlaI | GCGC | 3 cut(s) | 2147, 2468, 2489 |
| GsuI | CTGGAG | 3 cut(s) | 1221, 1521, 1895 |
| HaeII | RGCGCY | 2 cut(s) | 2149, 2470 |
| HaeIII | GGCC | 9 cut(s) | 70, 1030, 1117, 1165, 1335, 1396, 1653, 1820, 1834 |
| HapII | CCGG | 1 cut(s) | 1650 |
| HgaI | GACGC | 2 cut(s) | 2753, 2874 |
| HhaI | GCGC | 3 cut(s) | 2148, 2469, 2490 |
| Hin1I | GRCGYC | 1 cut(s) | 2866 |
| Hin6I | GCGC | 3 cut(s) | 2146, 2467, 2488 |
| HinP1I | GCGC | 3 cut(s) | 2146, 2467, 2488 |
| HincII | GTYRAC | 1 cut(s) | 2320 |
| HindII | GTYRAC | 1 cut(s) | 2320 |
| HinfI | GANTC | 8 cut(s) | 449, 1141, 1348, 1624, 2229, 2321, 2558, 2602 |
| HpaII | CCGG | 1 cut(s) | 1650 |
| HphI | GGTGA | 7 cut(s) | 491, 1481, 1637, 1679, 2339, 2357, 2936 |
| Hpy166II | GTNNAC | 5 cut(s) | 1919, 2112, 2260, 2320, 2693 |
| Hpy8I | GTNNAC | 5 cut(s) | 1919, 2112, 2260, 2320, 2693 |
| HpyCH4III | ACNGT | 9 cut(s) | 206, 370, 400, 1230, 1449, 1477, 2243, 2458, 2912 |
| HpyCH4IV | ACGT | 2 cut(s) | 2362, 2512 |
| HpyF3I | CTNAG | 9 cut(s) | 471, 567, 648, 1299, 1880, 2028, 2198, 2323, 2529 |
| HpySE526I | ACGT | 2 cut(s) | 2362, 2512 |
| Hsp92I | GRCGYC | 1 cut(s) | 2866 |
| HspAI | GCGC | 3 cut(s) | 2146, 2467, 2488 |
| Ksp22I | TGATCA | 1 cut(s) | 1177 |
| LmnI | GCTCC | 5 cut(s) | 113, 383, 1876, 2069, 2342 |
| LweI | GCATC | 6 cut(s) | 200, 1246, 1541, 2269, 2475, 2917 |
| MabI | ACCWGGT | 1 cut(s) | 1054 |
| MaeI | CTAG | 5 cut(s) | 1026, 1251, 1544, 1611, 2289 |
| MaeII | ACGT | 2 cut(s) | 2362, 2512 |
| MaeIII | GTNAC | 9 cut(s) | 344, 479, 1146, 1432, 1477, 1643, 1760, 1945, 2363 |
| MfeI | CAATTG | 2 cut(s) | 422, 1457 |
| MflI | RGATCY | 4 cut(s) | 674, 1495, 1681, 2003 |
| MhlI | GDGCHC | 4 cut(s) | 791, 1822, 1986, 2050 |
| MlsI | TGGCCA | 1 cut(s) | 1396 |
| MluNI | TGGCCA | 1 cut(s) | 1396 |
| MlyI | GAGTC | 2 cut(s) | 2315, 2567 |
| MmeI | TCCRAC | 8 cut(s) | 149, 477, 880, 931, 982, 1033, 1469, 2320 |
| Mox20I | TGGCCA | 1 cut(s) | 1396 |
| Mph1103I | ATGCAT | 3 cut(s) | 215, 1860, 2396 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1335, 1869, 2183 |
| MscI | TGGCCA | 1 cut(s) | 1396 |
| MseI | TTAA | 2 cut(s) | 2216, 2762 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1692, 1746, 2437, 2553 |
| Msp20I | TGGCCA | 1 cut(s) | 1396 |
| MspA1I | CMGCKG | 2 cut(s) | 2669, 2894 |
| MspI | CCGG | 1 cut(s) | 1650 |
| MspR9I | CCNGG | 8 cut(s) | 242, 714, 1056, 1500, 1593, 1650, 2285, 2373 |
| MunI | CAATTG | 2 cut(s) | 422, 1457 |
| Mva1269I | GAATGC | 2 cut(s) | 2394, 2530 |
| MvaI | CCWGG | 7 cut(s) | 242, 714, 1056, 1500, 1593, 2285, 2373 |
| NciI | CCSGG | 1 cut(s) | 1650 |
| NdeI | CATATG | 2 cut(s) | 121, 2598 |
| NlaIV | GGNNCC | 7 cut(s) | 7, 676, 1557, 1683, 1820, 2344, 2827 |
| NmeAIII | GCCGAG | 1 cut(s) | 1191 |
| NmuCI | GTSAC | 6 cut(s) | 479, 1477, 1643, 1760, 1945, 2363 |
| NsbI | TGCGCA | 1 cut(s) | 2489 |
| NsiI | ATGCAT | 3 cut(s) | 215, 1860, 2396 |
| NspI | RCATGY | 5 cut(s) | 1296, 1697, 2118, 2436, 2442 |
| PagI | TCATGA | 2 cut(s) | 1960, 2481 |
| PaqCI | CACCTGC | 1 cut(s) | 1129 |
| PceI | AGGCCT | 2 cut(s) | 1030, 1335 |
| PciI | ACATGT | 1 cut(s) | 2114 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1270 |
| PctI | GAATGC | 2 cut(s) | 2394, 2530 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1335, 1869, 2183 |
| PfeI | GAWTC | 6 cut(s) | 449, 1141, 1348, 1624, 2229, 2602 |
| PflFI | GACNNNGTC | 1 cut(s) | 2747 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 578, 1634, 1994, 2408 |
| PfoI | TCCNGGA | 1 cut(s) | 1498 |
| PleI | GAGTC | 2 cut(s) | 2315, 2566 |
| PpsI | GAGTC | 2 cut(s) | 2315, 2566 |
| PpuMI | RGGWCCY | 1 cut(s) | 1555 |
| PscI | ACATGT | 1 cut(s) | 2114 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2869 |
| Psp5II | RGGWCCY | 1 cut(s) | 1555 |
| Psp6I | CCWGG | 7 cut(s) | 240, 712, 1054, 1498, 1591, 2283, 2371 |
| PspEI | GGTNACC | 1 cut(s) | 1643 |
| PspGI | CCWGG | 7 cut(s) | 240, 712, 1054, 1498, 1591, 2283, 2371 |
| PspN4I | GGNNCC | 7 cut(s) | 7, 676, 1557, 1683, 1820, 2344, 2827 |
| PspOMI | GGGCCC | 1 cut(s) | 1818 |
| PspPI | GGNCC | 5 cut(s) | 6, 1555, 1818, 1819, 1832 |
| PspPPI | RGGWCCY | 1 cut(s) | 1555 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 28, 60 |
| PstI | CTGCAG | 3 cut(s) | 182, 1191, 1788 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1634 |
| PsuI | RGATCY | 4 cut(s) | 674, 1495, 1681, 2003 |
| PsyI | GACNNNGTC | 1 cut(s) | 2747 |
| PvuII | CAGCTG | 1 cut(s) | 2894 |
| RsaI | GTAC | 4 cut(s) | 562, 702, 2245, 2259 |
| RsaNI | GTAC | 4 cut(s) | 561, 701, 2244, 2258 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1692, 1746, 2437, 2553 |
| SaqAI | TTAA | 2 cut(s) | 2216, 2762 |
| Sau96I | GGNCC | 5 cut(s) | 6, 1555, 1818, 1819, 1832 |
| SchI | GAGTC | 2 cut(s) | 2315, 2567 |
| ScrFI | CCNGG | 8 cut(s) | 242, 714, 1056, 1500, 1593, 1650, 2285, 2373 |
| SduI | GDGCHC | 4 cut(s) | 791, 1822, 1986, 2050 |
| SexAI | ACCWGGT | 1 cut(s) | 1054 |
| SfaNI | GCATC | 6 cut(s) | 200, 1246, 1541, 2269, 2475, 2917 |
| SfcI | CTRYAG | 5 cut(s) | 178, 349, 1187, 1784, 2770 |
| SinI | GGWCC | 2 cut(s) | 6, 1555 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1692, 1746, 2437, 2553 |
| SseBI | AGGCCT | 2 cut(s) | 1030, 1335 |
| SsiI | CCGC | 9 cut(s) | 111, 155, 190, 1132, 1466, 2074, 2368, 2667, 2900 |
| SspI | AATATT | 1 cut(s) | 1828 |
| SspMI | CTAG | 5 cut(s) | 1026, 1251, 1544, 1611, 2289 |
| StuI | AGGCCT | 2 cut(s) | 1030, 1335 |
| StyD4I | CCNGG | 8 cut(s) | 240, 712, 1054, 1498, 1591, 1648, 2283, 2371 |
| TaaI | ACNGT | 9 cut(s) | 206, 370, 400, 1230, 1449, 1477, 2243, 2458, 2912 |
| TaiI | ACGT | 2 cut(s) | 2365, 2515 |
| TaqI | TCGA | 7 cut(s) | 221, 819, 870, 1156, 1264, 1799, 2187 |
| TatI | WGTACW | 2 cut(s) | 700, 2257 |
| TauI | GCSGC | 2 cut(s) | 192, 2903 |
| TfiI | GAWTC | 6 cut(s) | 449, 1141, 1348, 1624, 2229, 2602 |
| Tru1I | TTAA | 2 cut(s) | 2216, 2762 |
| Tru9I | TTAA | 2 cut(s) | 2216, 2762 |
| TscAI | CASTG | 4 cut(s) | 209, 1233, 1800, 2020 |
| TseFI | GTSAC | 6 cut(s) | 479, 1477, 1643, 1760, 1945, 2363 |
| Tsp45I | GTSAC | 6 cut(s) | 479, 1477, 1643, 1760, 1945, 2363 |
| TspDTI | ATGAA | 9 cut(s) | 35, 420, 462, 647, 1383, 1977, 2598, 2615, 2892 |
| TspGWI | ACGGA | 1 cut(s) | 2261 |
| TspRI | CASTG | 4 cut(s) | 209, 1233, 1800, 2020 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2747 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 578, 1634, 1994, 2408 |
| VpaK11BI | GGWCC | 2 cut(s) | 6, 1555 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 474, 1125, 2731 |
| XapI | RAATTY | 5 cut(s) | 146, 1210, 1801, 1964, 2125 |
| XceI | RCATGY | 5 cut(s) | 1296, 1697, 2118, 2436, 2442 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1335, 1869, 2183 |
| XspI | CTAG | 5 cut(s) | 1026, 1251, 1544, 1611, 2289 |
| Zsp2I | ATGCAT | 3 cut(s) | 215, 1860, 2396 |