Rorug05G0422000

CW-type Zinc Finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006399
Physical Location & Seq
Forward (+)
58661315 .. 58662851
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0422000.1

Sequence Viewer

Length: 1257 bp
ATGGCTAAACTGAGAGTGTCTTTTGTGTTGGTGGCTGTCGCTGTGGTGCTCATTGCCATGGAAGCCAGCTCTGTTCTGGGCCAAGGCAGTGGAAACGGAAATGGGAATGGGAATGGGAACACTGGAAGTGGCAATGGAAACGGGAATGGCAATGGCAACACTGGCAGTGGCAACGGGAATGGGAACGGGAATGGCAACACTGGCAGTGGCAACGGCAACGGAAATGGGAACGGCAACGGCAACGGAAATGGTAATGGCAACGGTAACGGAAATGGCAATGGCAATGGCAACGGGAATGGTAACGGCAATGCAATTAGTGACAGCACGAACTACGACGTATTGCCACCACTAGCGACGGGACAGGAGCAATGCATGTGCAAAGCACAGGGAGCTTGTTTTTACAAGACCCTTGTTTGTCCACCAGAATGCCCCGAGAGAAAGCCTAAAAACAACAAGAAAAAAAAGGGTTGCTTCGTTAACTGCGGAAGCAAGTGTGAAGTCACTTGCAAAATTAGAAGAGGCAACTGTGATGGTTATGGATCTATCTGCTACGACCCTCGATTTATTGGTGGTGATGGTGTAATGTTCTACTTCCATGGAGCAAAGGGAGGAAACTTTGCTATTGTCTCGGATGAAAACCTCCACATCAATGCACATTTCATTGGGACTCGACCAGGAGGAAGGACTCGTGACTTCACATGGATTCAAGCAATCTCAATCATGTTCGACAGTCACACCCTTGTTATTGGAGCAAAGAGGGTTTCCAAGTGGAATGACAAAGTTGATGCTCTCATGGTGAAGTGGGATAGTGAGTCAGTTGACATCCCTGAATATGGAGGGGCCGAATGGAGGACTAATGATGAGGACAGAGAGGTAATCATCGAAAGAACCGATGACGCGAACTATGTAAGAGTTACGGTCTCTGATTTGGTCGACATAACCATTAGGGTTAGGCCTATTGGAGAAAAGGAAGACAGGGTTCATCATTACCATATACCAGCTGATGATACTTTTGCTCACTTGGAGACACAGTTCACATTTTCGAAATTATCTGATCTGGTGGAAGGAGTTCTAGGGAAGACCTATAGGCCAGGTTATGTTAGTCGAGTCAAGAGAGGAGTTCCAATGCCATTGATGGGTGGAGAGGATAAGTACAAAACTCCATCACTCTTTTCACCTATCTGCAAGGTTTGTAGGTTTCAAACTACTGCTCGTCAATCTGGTGGGCTTGCAATTACAACCGGAGTGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 zf-CW

Protein Analysis

418

Amino Acids

44.31

Weight (kDa)

8.34

Isoelectric Point (pI)

12.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 344 - 400 8.1e-28 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 899
AciI CCGC 1 cut(s) 483
AclWI GGATC 1 cut(s) 547
AfaI GTAC 1 cut(s) 1154
AfiI CCNNNNNNNGG 3 cut(s) 833, 849, 1136
AgsI TTSAA 2 cut(s) 707, 1202
AjnI CCWGG 2 cut(s) 673, 1090
AloI GAACNNNNNNTCC 2 cut(s) 1016, 1048
AluBI AGCT 3 cut(s) 69, 392, 1001
AluI AGCT 3 cut(s) 69, 392, 1001
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 3 cut(s) 631, 925, 1019
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 4 cut(s) 79, 840, 953, 1088
ApeKI GCWGC 1 cut(s) 1250
Asp700I GAANNNNTTC 1 cut(s) 1068
AspS9I GGNCC 2 cut(s) 79, 840
AsuHPI GGTGA 3 cut(s) 584, 808, 1167
AsuII TTCGAA 1 cut(s) 1043
AvaI CYCGRG 1 cut(s) 431
BauI CACGAG 1 cut(s) 687
BbsI GAAGAC 2 cut(s) 978, 1085
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 1237
BccI CCATC 4 cut(s) 524, 569, 1129, 1171
BceAI ACGGC 4 cut(s) 229, 247, 253, 319
BciT130I CCWGG 2 cut(s) 675, 1092
BcoDI GTCTC 3 cut(s) 631, 925, 1019
BfaI CTAG 2 cut(s) 350, 1073
BfmI CTRYAG 1 cut(s) 1084
BisI GCNGC 1 cut(s) 1251
BlsI GCNGC 1 cut(s) 1252
Bme1390I CCNGG 2 cut(s) 675, 1092
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 79, 840
BmiI GGNNCC 1 cut(s) 841
BmrFI CCNGG 2 cut(s) 675, 1092
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 2 cut(s) 978, 1085
Bpu14I TTCGAA 1 cut(s) 1043
BsaI GGTCTC 1 cut(s) 925
BsaJI CCNNGG 3 cut(s) 57, 82, 595
BsaWI WCCGGW 1 cut(s) 1241
BsaXI ACNNNNNCTCC 2 cut(s) 1016, 1046
Bsc4I CCNNNNNNNGG 3 cut(s) 833, 849, 1136
Bse1I ACTGG 3 cut(s) 127, 166, 205
Bse3DI GCAATG 7 cut(s) 51, 139, 157, 283, 289, 313, 374
BseBI CCWGG 2 cut(s) 675, 1092
BseDI CCNNGG 3 cut(s) 57, 82, 595
BseGI GGATG 2 cut(s) 637, 822
BseLI CCNNNNNNNGG 3 cut(s) 833, 849, 1136
BseMI GCAATG 7 cut(s) 51, 139, 157, 283, 289, 313, 374
BseNI ACTGG 3 cut(s) 127, 166, 205
BseRI GAGGAG 1 cut(s) 1131
BseXI GCAGC 1 cut(s) 1237
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 4 cut(s) 81, 842, 955, 1090
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 1242
BslFI GGGAC 2 cut(s) 372, 679
BslI CCNNNNNNNGG 3 cut(s) 833, 849, 1136
BsmAI GTCTC 3 cut(s) 631, 925, 1019
BsmFI GGGAC 2 cut(s) 372, 679
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 4 cut(s) 81, 842, 955, 1090
Bso31I GGTCTC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 1043
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 539, 1054
Bsp19I CCATGG 2 cut(s) 57, 595
BspACI CCGC 1 cut(s) 483
BspANI GGCC 4 cut(s) 81, 842, 955, 1090
BspFNI CGCG 1 cut(s) 899
BspLI GGNNCC 1 cut(s) 841
BspPI GGATC 1 cut(s) 547
BspT104I TTCGAA 1 cut(s) 1043
BspTNI GGTCTC 1 cut(s) 925
BsrDI GCAATG 7 cut(s) 51, 139, 157, 283, 289, 313, 374
BsrI ACTGG 3 cut(s) 127, 166, 205
BssECI CCNNGG 3 cut(s) 57, 82, 595
BssMI GATC 2 cut(s) 539, 1054
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 3 cut(s) 57, 82, 595
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 675, 1092
Bst4CI ACNGT 5 cut(s) 263, 527, 731, 919, 1032
Bst6I CTCTTC 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 1043
BstC8I GCNNGC 2 cut(s) 67, 1230
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 2 cut(s) 57, 595
BstF5I GGATG 2 cut(s) 637, 822
BstFNI CGCG 1 cut(s) 899
BstKTI GATC 2 cut(s) 542, 1057
BstMAI GTCTC 3 cut(s) 631, 925, 1019
BstMBI GATC 2 cut(s) 539, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 62, 162, 201, 389
BstNI CCWGG 2 cut(s) 675, 1092
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 673, 1090
BstSFI CTRYAG 1 cut(s) 1084
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 1 cut(s) 1237
BstV2I GAAGAC 2 cut(s) 978, 1085
BstX2I RGATCY 1 cut(s) 539
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 4 cut(s) 81, 842, 955, 1090
BtgI CCRYGG 2 cut(s) 57, 595
BtsCI GGATG 2 cut(s) 637, 822
BtsI GCAGTG 3 cut(s) 94, 172, 211
BtsIMutI CAGTG 6 cut(s) 94, 120, 159, 172, 198, 211
Cac8I GCNNGC 2 cut(s) 67, 1230
Cfr13I GGNCC 2 cut(s) 79, 840
CseI GACGC 1 cut(s) 905
Csp6I GTAC 1 cut(s) 1153
CspCI CAANNNNNGTGG 1 cut(s) 1227
CviAII CATG 6 cut(s) 58, 373, 596, 699, 721, 793
CviQI GTAC 1 cut(s) 1153
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 541, 1056
DpnII GATC 2 cut(s) 539, 1054
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
Eco130I CCWWGG 3 cut(s) 57, 82, 595
Eco147I AGGCCT 1 cut(s) 955
Eco31I GGTCTC 1 cut(s) 925
Eco88I CYCGRG 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 673, 1090
EcoT14I CCWWGG 3 cut(s) 57, 82, 595
EcoT22I ATGCAT 1 cut(s) 374
ErhI CCWWGG 3 cut(s) 57, 82, 595
FaeI CATG 6 cut(s) 61, 376, 599, 702, 724, 796
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 2 cut(s) 372, 679
FatI CATG 6 cut(s) 57, 372, 595, 698, 720, 792
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 1 cut(s) 1251
FokI GGATG 2 cut(s) 644, 809
Fsp4HI GCNGC 1 cut(s) 1251
FspBI CTAG 2 cut(s) 350, 1073
GluI GCNGC 1 cut(s) 1251
HaeIII GGCC 4 cut(s) 81, 842, 955, 1090
HapII CCGG 1 cut(s) 1242
HgaI GACGC 1 cut(s) 905
Hin1II CATG 6 cut(s) 61, 376, 599, 702, 724, 796
HincII GTYRAC 3 cut(s) 478, 820, 934
HindII GTYRAC 3 cut(s) 478, 820, 934
HinfI GANTC 5 cut(s) 667, 685, 703, 812, 1107
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 1 cut(s) 1242
HphI GGTGA 3 cut(s) 584, 808, 1167
Hpy166II GTNNAC 5 cut(s) 419, 478, 820, 934, 1035
Hpy188I TCNGA 3 cut(s) 631, 925, 1054
Hpy188III TCNNGA 2 cut(s) 689, 1111
Hpy8I GTNNAC 5 cut(s) 419, 478, 820, 934, 1035
Hpy99I CGWCG 2 cut(s) 338, 358
HpyAV CCTTC 2 cut(s) 675, 1058
HpyCH4III ACNGT 5 cut(s) 263, 527, 731, 919, 1032
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 7 cut(s) 311, 372, 378, 507, 653, 1185, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 162, 201, 389
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 6 cut(s) 61, 376, 599, 702, 724, 796
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 539, 1054
LmnI GCTCC 4 cut(s) 364, 389, 599, 749
Lsp1109I GCAGC 1 cut(s) 1237
LweI GCATC 1 cut(s) 775
MaeI CTAG 2 cut(s) 350, 1073
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 7 cut(s) 263, 299, 317, 499, 689, 731, 913
MalI GATC 2 cut(s) 541, 1056
MboI GATC 2 cut(s) 539, 1054
MboII GAAGA 3 cut(s) 528, 983, 1090
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 4 cut(s) 312, 510, 1046, 1233
MlyI GAGTC 4 cut(s) 661, 679, 821, 1116
Mph1103I ATGCAT 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 2 cut(s) 477, 1255
MslI CAYNNNNRTG 3 cut(s) 56, 424, 648
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 1 cut(s) 1242
MspR9I CCNGG 2 cut(s) 675, 1092
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 2 cut(s) 675, 1092
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 4 cut(s) 62, 162, 201, 389
NcoI CCATGG 2 cut(s) 57, 595
NdeII GATC 2 cut(s) 539, 1054
NlaIII CATG 6 cut(s) 61, 376, 599, 702, 724, 796
NlaIV GGNNCC 1 cut(s) 841
NmuCI GTSAC 4 cut(s) 317, 499, 689, 731
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 1043
PceI AGGCCT 1 cut(s) 955
PcsI WCGNNNNNNNCGW 1 cut(s) 888
PctI GAATGC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 703
PkrI GCNGC 1 cut(s) 1252
PleI GAGTC 4 cut(s) 661, 679, 820, 1115
PpsI GAGTC 4 cut(s) 661, 679, 820, 1115
Psp6I CCWGG 2 cut(s) 673, 1090
PspGI CCWGG 2 cut(s) 673, 1090
PspN4I GGNNCC 1 cut(s) 841
PspPI GGNCC 2 cut(s) 79, 840
PsuI RGATCY 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 1 cut(s) 1154
RsaNI GTAC 1 cut(s) 1153
RseI CAYNNNNRTG 3 cut(s) 56, 424, 648
SalI GTCGAC 1 cut(s) 932
SaqAI TTAA 2 cut(s) 477, 1255
SatI GCNGC 1 cut(s) 1251
Sau3AI GATC 2 cut(s) 539, 1054
Sau96I GGNCC 2 cut(s) 79, 840
SchI GAGTC 4 cut(s) 661, 679, 821, 1116
ScrFI CCNGG 2 cut(s) 675, 1092
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 1 cut(s) 1084
SfuI TTCGAA 1 cut(s) 1043
SmiMI CAYNNNNRTG 3 cut(s) 56, 424, 648
Sse9I AATT 4 cut(s) 312, 510, 1046, 1233
SseBI AGGCCT 1 cut(s) 955
SsiI CCGC 1 cut(s) 483
SspMI CTAG 2 cut(s) 350, 1073
StuI AGGCCT 1 cut(s) 955
StyD4I CCNGG 2 cut(s) 673, 1090
StyI CCWWGG 3 cut(s) 57, 82, 595
TaaI ACNGT 5 cut(s) 263, 527, 731, 919, 1032
TaiI ACGT 1 cut(s) 339
TaqI TCGA 7 cut(s) 559, 670, 726, 882, 933, 1043, 1105
TasI AATT 4 cut(s) 312, 510, 1046, 1233
TatI WGTACW 1 cut(s) 1152
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 2 cut(s) 477, 1255
Tru9I TTAA 2 cut(s) 477, 1255
TscAI CASTG 6 cut(s) 94, 127, 166, 172, 205, 211
TseFI GTSAC 4 cut(s) 317, 499, 689, 731
TseI GCWGC 1 cut(s) 1250
Tsp45I GTSAC 4 cut(s) 317, 499, 689, 731
TspDTI ATGAA 3 cut(s) 648, 649, 971
TspGWI ACGGA 4 cut(s) 111, 234, 258, 282
TspRI CASTG 6 cut(s) 94, 127, 166, 172, 205, 211
XceI RCATGY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 2 cut(s) 350, 1073
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.