CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 |
| malus_domestica | MD03G1051600.v1.1 MD11G1053500.v1.1 MD11G1053700.v1.1 |
| prunus_persica | Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 |
| pyrus_communis | pycom03g04100 pycom11g04330 |
| rosa_chinensis | RchiOBHm_Chr5g0073201 |
| rosa_laevigata | RLG00000036373 |
| rosa_multiflora | Rmu_sc0001887.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00007990 |
| rosa_rugosa | Rorug05G0422000 Rorug05G0422100 |
| rosa_samantha | Rh5AG478900 Rh5BG499600 Rh5CG522800 Rh5DG511700 |
| rosa_wichuraiana | Rw5G044520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 964, 1950 |
| Acc36I | ACCTGC | 4 cut(s) | 910, 964, 1734, 1950 |
| AccB1I | GGYRCC | 2 cut(s) | 2402, 2498 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1540 |
| AccBSI | CCGCTC | 1 cut(s) | 386 |
| AccI | GTMKAC | 2 cut(s) | 730, 1905 |
| AccII | CGCG | 3 cut(s) | 940, 1003, 2343 |
| AclWI | GGATC | 5 cut(s) | 292, 676, 1325, 1502, 1515 |
| AcoI | YGGCCR | 3 cut(s) | 586, 998, 1229 |
| AcuI | CTGAAG | 2 cut(s) | 981, 2100 |
| AcvI | CACGTG | 1 cut(s) | 817 |
| AfaI | GTAC | 5 cut(s) | 433, 795, 1972, 2206, 2714 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 605, 1320 |
| AjnI | CCWGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2522, 2554 |
| Alw21I | GWGCWC | 1 cut(s) | 1967 |
| Alw26I | GTCTC | 5 cut(s) | 822, 917, 1843, 2044, 2800 |
| AlwI | GGATC | 5 cut(s) | 292, 676, 1325, 1502, 1515 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1726, 2585 |
| Ama87I | CYCGRG | 1 cut(s) | 2854 |
| AoxI | GGCC | 8 cut(s) | 68, 586, 998, 1168, 1229, 1649, 1838, 2694 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 859, 891 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 609, 1170, 1686 |
| AspLEI | GCGC | 3 cut(s) | 940, 942, 2295 |
| AspS9I | GGNCC | 6 cut(s) | 1391, 1635, 1649, 1723, 1838, 2695 |
| AsuHPI | GGTGA | 7 cut(s) | 404, 527, 1481, 1505, 2183, 2807, 2876 |
| AsuII | TTCGAA | 1 cut(s) | 1360 |
| AvaI | CYCGRG | 1 cut(s) | 2854 |
| AvaII | GGWCC | 3 cut(s) | 1391, 1635, 1723 |
| BaeGI | GKGCMC | 1 cut(s) | 816 |
| BalI | TGGCCA | 1 cut(s) | 1231 |
| BamHI | GGATCC | 1 cut(s) | 1507 |
| BanI | GGYRCC | 2 cut(s) | 2402, 2498 |
| BanII | GRGCYC | 4 cut(s) | 772, 1803, 1867, 1994 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 829, 861 |
| BauI | CACGAG | 2 cut(s) | 291, 1966 |
| BbrPI | CACGTG | 1 cut(s) | 817 |
| Bbv12I | GWGCWC | 1 cut(s) | 1967 |
| BbvCI | CCTCAGC | 3 cut(s) | 1134, 1697, 2689 |
| BccI | CCATC | 7 cut(s) | 102, 742, 754, 1534, 1542, 1849, 2263 |
| BceAI | ACGGC | 2 cut(s) | 712, 2306 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 854, 888 |
| BciT130I | CCWGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| BciVI | GTATCC | 1 cut(s) | 1546 |
| BclI | TGATCA | 1 cut(s) | 1012 |
| BcoDI | GTCTC | 5 cut(s) | 822, 917, 1843, 2044, 2800 |
| BfaI | CTAG | 6 cut(s) | 222, 351, 1086, 1443, 1476, 2115 |
| BfmI | CTRYAG | 4 cut(s) | 178, 1022, 1458, 1604 |
| BfoI | RGCGCY | 1 cut(s) | 2296 |
| BfuAI | ACCTGC | 4 cut(s) | 910, 964, 1734, 1950 |
| BfuI | GTATCC | 1 cut(s) | 1546 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2693 |
| BglII | AGATCT | 2 cut(s) | 1820, 2662 |
| Bme1390I | CCNGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| Bme18I | GGWCC | 3 cut(s) | 1391, 1635, 1723 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 605, 1320 |
| BmeT110I | CYCGRG | 1 cut(s) | 2854 |
| BmgT120I | GGNCC | 6 cut(s) | 1391, 1635, 1649, 1723, 1838, 2695 |
| BmrFI | CCNGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| BmrI | ACTGGG | 2 cut(s) | 649, 1799 |
| BmsI | GCATC | 7 cut(s) | 200, 1081, 1376, 2095, 2298, 2503, 2572 |
| BmuI | ACTGGG | 2 cut(s) | 649, 1799 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1476 |
| BpmI | CTGGAG | 1 cut(s) | 1712 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1134, 1697, 2689 |
| Bpu14I | TTCGAA | 1 cut(s) | 1360 |
| BpuEI | CTTGAG | 1 cut(s) | 2559 |
| BsaAI | YACGTR | 2 cut(s) | 817, 1557 |
| BsaI | GGTCTC | 1 cut(s) | 822 |
| BsaJI | CCNNGG | 6 cut(s) | 583, 1001, 1424, 1947, 2109, 2197 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 891, 921, 2124, 2154 |
| Bse1I | ACTGG | 4 cut(s) | 655, 1610, 1805, 2598 |
| Bse3DI | GCAATG | 4 cut(s) | 264, 942, 2275, 2519 |
| BseBI | CCWGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| BseDI | CCNNGG | 6 cut(s) | 583, 1001, 1424, 1947, 2109, 2197 |
| BseGI | GGATG | 8 cut(s) | 215, 734, 1254, 2021, 2110, 2182, 2389, 2485 |
| BseMI | GCAATG | 4 cut(s) | 264, 942, 2275, 2519 |
| BseNI | ACTGG | 4 cut(s) | 655, 1610, 1805, 2598 |
| BsePI | GCGCGC | 1 cut(s) | 938 |
| BseRI | GAGGAG | 1 cut(s) | 1997 |
| BseSI | GKGCMC | 1 cut(s) | 816 |
| BseYI | CCCAGC | 1 cut(s) | 1835 |
| BsgI | GTGCAG | 1 cut(s) | 1959 |
| Bsh1236I | CGCG | 3 cut(s) | 940, 1003, 2343 |
| BshFI | GGCC | 8 cut(s) | 70, 588, 1000, 1170, 1231, 1651, 1840, 2696 |
| BshNI | GGYRCC | 2 cut(s) | 2402, 2498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1967 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2854 |
| BslFI | GGGAC | 3 cut(s) | 188, 1404, 2861 |
| BsmAI | GTCTC | 5 cut(s) | 822, 917, 1843, 2044, 2800 |
| BsmBI | CGTCTC | 2 cut(s) | 2044, 2800 |
| BsmFI | GGGAC | 3 cut(s) | 188, 1404, 2861 |
| BsnI | GGCC | 8 cut(s) | 70, 588, 1000, 1170, 1231, 1651, 1840, 2696 |
| Bso31I | GGTCTC | 1 cut(s) | 822 |
| BsoBI | CYCGRG | 1 cut(s) | 2854 |
| Bsp119I | TTCGAA | 1 cut(s) | 1360 |
| Bsp1286I | GDGCHC | 6 cut(s) | 772, 816, 1803, 1867, 1967, 1994 |
| Bsp1407I | TGTACA | 1 cut(s) | 793 |
| Bsp143I | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| BspANI | GGCC | 8 cut(s) | 70, 588, 1000, 1170, 1231, 1651, 1840, 2696 |
| BspFNI | CGCG | 3 cut(s) | 940, 1003, 2343 |
| BspMAI | CTGCAG | 4 cut(s) | 182, 1026, 1462, 1608 |
| BspMI | ACCTGC | 4 cut(s) | 910, 964, 1734, 1950 |
| BspPI | GGATC | 5 cut(s) | 292, 676, 1325, 1502, 1515 |
| BspT104I | TTCGAA | 1 cut(s) | 1360 |
| BspT107I | GGYRCC | 2 cut(s) | 2402, 2498 |
| BspTNI | GGTCTC | 1 cut(s) | 822 |
| BsrBI | CCGCTC | 1 cut(s) | 386 |
| BsrDI | GCAATG | 4 cut(s) | 264, 942, 2275, 2519 |
| BsrGI | TGTACA | 1 cut(s) | 793 |
| BsrI | ACTGG | 4 cut(s) | 655, 1610, 1805, 2598 |
| BssECI | CCNNGG | 6 cut(s) | 583, 1001, 1424, 1947, 2109, 2197 |
| BssHII | GCGCGC | 1 cut(s) | 938 |
| BssMI | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| BssNAI | GTATAC | 1 cut(s) | 731 |
| BssSI | CACGAG | 2 cut(s) | 291, 1966 |
| Bst1107I | GTATAC | 1 cut(s) | 731 |
| Bst2BI | CACGAG | 2 cut(s) | 291, 1966 |
| Bst2UI | CCWGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| Bst6I | CTCTTC | 2 cut(s) | 1782, 2042 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 186, 2274, 2585 |
| BstAUI | TGTACA | 1 cut(s) | 793 |
| BstBAI | YACGTR | 2 cut(s) | 817, 1557 |
| BstBI | TTCGAA | 1 cut(s) | 1360 |
| BstC8I | GCNNGC | 8 cut(s) | 68, 940, 1299, 1303, 2156, 2246, 2554, 2676 |
| BstDSI | CCRYGG | 1 cut(s) | 1001 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 960 |
| BstF5I | GGATG | 8 cut(s) | 215, 734, 1254, 2021, 2110, 2182, 2389, 2485 |
| BstFNI | CGCG | 3 cut(s) | 940, 1003, 2343 |
| BstH2I | RGCGCY | 1 cut(s) | 2296 |
| BstHHI | GCGC | 3 cut(s) | 940, 942, 2295 |
| BstKTI | GATC | 9 cut(s) | 80, 300, 471, 671, 1015, 1333, 1510, 1823, 2665 |
| BstMAI | GTCTC | 5 cut(s) | 822, 917, 1843, 2044, 2800 |
| BstMBI | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| BstNI | CCWGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| BstNSI | RCATGY | 3 cut(s) | 1131, 1387, 1935 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1476 |
| BstSCI | CCNGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| BstSFI | CTRYAG | 4 cut(s) | 178, 1022, 1458, 1604 |
| BstSLI | GKGCMC | 1 cut(s) | 816 |
| BstSNI | TACGTA | 1 cut(s) | 1557 |
| BstUI | CGCG | 3 cut(s) | 940, 1003, 2343 |
| BstX2I | RGATCY | 4 cut(s) | 1330, 1507, 1820, 2662 |
| BstYI | RGATCY | 4 cut(s) | 1330, 1507, 1820, 2662 |
| BstZ17I | GTATAC | 1 cut(s) | 731 |
| BsuI | GTATCC | 1 cut(s) | 1546 |
| BsuRI | GGCC | 8 cut(s) | 70, 588, 1000, 1170, 1231, 1651, 1840, 2696 |
| BtgI | CCRYGG | 1 cut(s) | 1001 |
| BtsCI | GGATG | 8 cut(s) | 215, 734, 1254, 2021, 2110, 2182, 2389, 2485 |
| BtsI | GCAGTG | 1 cut(s) | 1830 |
| BtsIMutI | CAGTG | 8 cut(s) | 202, 1061, 1617, 1830, 1865, 1874, 2289, 2605 |
| BveI | ACCTGC | 4 cut(s) | 910, 964, 1734, 1950 |
| Cac8I | GCNNGC | 8 cut(s) | 68, 940, 1299, 1303, 2156, 2246, 2554, 2676 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1726, 2585 |
| CfoI | GCGC | 3 cut(s) | 940, 942, 2295 |
| Cfr13I | GGNCC | 6 cut(s) | 1391, 1635, 1649, 1723, 1838, 2695 |
| Cfr42I | CCGCGG | 1 cut(s) | 1004 |
| CseI | GACGC | 2 cut(s) | 1735, 2318 |
| Csp6I | GTAC | 5 cut(s) | 432, 794, 1971, 2205, 2713 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 355, 390 |
| CviQI | GTAC | 5 cut(s) | 432, 794, 1971, 2205, 2713 |
| DpnI | GATC | 9 cut(s) | 79, 299, 470, 670, 1014, 1332, 1509, 1822, 2664 |
| DpnII | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| DriI | GACNNNNNGTC | 2 cut(s) | 605, 1320 |
| EaeI | YGGCCR | 3 cut(s) | 586, 998, 1229 |
| Eam1104I | CTCTTC | 2 cut(s) | 1782, 2042 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 605, 1320 |
| EarI | CTCTTC | 2 cut(s) | 1782, 2042 |
| EciI | GGCGGA | 1 cut(s) | 478 |
| Eco105I | TACGTA | 1 cut(s) | 1557 |
| Eco147I | AGGCCT | 1 cut(s) | 1170 |
| Eco24I | GRGCYC | 4 cut(s) | 772, 1803, 1867, 1994 |
| Eco31I | GGTCTC | 1 cut(s) | 822 |
| Eco47I | GGWCC | 3 cut(s) | 1391, 1635, 1723 |
| Eco57I | CTGAAG | 2 cut(s) | 981, 2100 |
| Eco72I | CACGTG | 1 cut(s) | 817 |
| Eco88I | CYCGRG | 1 cut(s) | 2854 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 960 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1391, 1635, 1723 |
| EcoRI | GAATTC | 3 cut(s) | 1045, 2353, 2449 |
| EcoRII | CCWGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| EcoT22I | ATGCAT | 1 cut(s) | 1677 |
| EcoT38I | GRGCYC | 4 cut(s) | 772, 1803, 1867, 1994 |
| Esp3I | CGTCTC | 2 cut(s) | 2044, 2800 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2748, 2780 |
| FaqI | GGGAC | 3 cut(s) | 188, 1404, 2861 |
| FauI | CCCGC | 2 cut(s) | 1087, 1646 |
| FauNDI | CATATG | 3 cut(s) | 121, 1488, 2430 |
| FbaI | TGATCA | 1 cut(s) | 1012 |
| FblI | GTMKAC | 2 cut(s) | 730, 1905 |
| FokI | GGATG | 8 cut(s) | 222, 721, 1261, 2008, 2117, 2169, 2396, 2492 |
| FriOI | GRGCYC | 4 cut(s) | 772, 1803, 1867, 1994 |
| FspBI | CTAG | 6 cut(s) | 222, 351, 1086, 1443, 1476, 2115 |
| GlaI | GCGC | 3 cut(s) | 939, 941, 2294 |
| GsaI | CCCAGC | 1 cut(s) | 1839 |
| GsuI | CTGGAG | 1 cut(s) | 1712 |
| HaeII | RGCGCY | 1 cut(s) | 2296 |
| HaeIII | GGCC | 8 cut(s) | 70, 588, 1000, 1170, 1231, 1651, 1840, 2696 |
| HgaI | GACGC | 2 cut(s) | 1735, 2318 |
| HhaI | GCGC | 3 cut(s) | 940, 942, 2295 |
| Hin6I | GCGC | 3 cut(s) | 938, 940, 2293 |
| HinP1I | GCGC | 3 cut(s) | 938, 940, 2293 |
| HincII | GTYRAC | 3 cut(s) | 675, 718, 1906 |
| HindII | GTYRAC | 3 cut(s) | 675, 718, 1906 |
| HindIII | AAGCTT | 1 cut(s) | 2672 |
| HpaI | GTTAAC | 1 cut(s) | 675 |
| HphI | GGTGA | 7 cut(s) | 404, 527, 1481, 1505, 2183, 2807, 2876 |
| Hpy99I | CGWCG | 1 cut(s) | 1910 |
| HpyCH4IV | ACGT | 5 cut(s) | 816, 1211, 1400, 1556, 1908 |
| HpySE526I | ACGT | 5 cut(s) | 816, 1211, 1400, 1556, 1908 |
| HspAI | GCGC | 3 cut(s) | 938, 940, 2293 |
| KflI | GGGWCCC | 1 cut(s) | 1391 |
| Ksp22I | TGATCA | 1 cut(s) | 1012 |
| KspAI | GTTAAC | 1 cut(s) | 675 |
| KspI | CCGCGG | 1 cut(s) | 1004 |
| Kzo9I | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| LmnI | GCTCC | 7 cut(s) | 113, 767, 1037, 1693, 1886, 2168, 2549 |
| LweI | GCATC | 7 cut(s) | 200, 1081, 1376, 2095, 2298, 2503, 2572 |
| MaeI | CTAG | 6 cut(s) | 222, 351, 1086, 1443, 1476, 2115 |
| MaeII | ACGT | 5 cut(s) | 816, 1211, 1400, 1556, 1908 |
| MalI | GATC | 9 cut(s) | 79, 299, 470, 670, 1014, 1332, 1509, 1822, 2664 |
| MbiI | CCGCTC | 1 cut(s) | 386 |
| MboI | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| MfeI | CAATTG | 2 cut(s) | 422, 2000 |
| MflI | RGATCY | 4 cut(s) | 1330, 1507, 1820, 2662 |
| MhlI | GDGCHC | 6 cut(s) | 772, 816, 1803, 1867, 1967, 1994 |
| MlsI | TGGCCA | 1 cut(s) | 1231 |
| MluNI | TGGCCA | 1 cut(s) | 1231 |
| MlyI | GAGTC | 3 cut(s) | 494, 1466, 2141 |
| MmeI | TCCRAC | 5 cut(s) | 149, 533, 880, 1304, 2146 |
| Mox20I | TGGCCA | 1 cut(s) | 1231 |
| Mph1103I | ATGCAT | 1 cut(s) | 1677 |
| MroXI | GAANNNNTTC | 3 cut(s) | 609, 1170, 1686 |
| MscI | TGGCCA | 1 cut(s) | 1231 |
| MseI | TTAA | 4 cut(s) | 341, 674, 2034, 2397 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2263, 2478 |
| Msp20I | TGGCCA | 1 cut(s) | 1231 |
| MspA1I | CMGCKG | 4 cut(s) | 1003, 1294, 2314, 2693 |
| MspR9I | CCNGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| MunI | CAATTG | 2 cut(s) | 422, 2000 |
| MvaI | CCWGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| MvnI | CGCG | 3 cut(s) | 940, 1003, 2343 |
| NdeI | CATATG | 3 cut(s) | 121, 1488, 2430 |
| NdeII | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| NmeAIII | GCCGAG | 1 cut(s) | 564 |
| NmuCI | GTSAC | 9 cut(s) | 353, 1267, 1312, 1469, 1580, 1762, 2144, 2189, 2795 |
| NsiI | ATGCAT | 1 cut(s) | 1677 |
| NspI | RCATGY | 3 cut(s) | 1131, 1387, 1935 |
| NspV | TTCGAA | 1 cut(s) | 1360 |
| PaqCI | CACCTGC | 2 cut(s) | 964, 1950 |
| PauI | GCGCGC | 1 cut(s) | 938 |
| PceI | AGGCCT | 1 cut(s) | 1170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 35 |
| PdmI | GAANNNNTTC | 3 cut(s) | 609, 1170, 1686 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1540 |
| PfoI | TCCNGGA | 1 cut(s) | 1333 |
| PleI | GAGTC | 3 cut(s) | 493, 1466, 2141 |
| PmaCI | CACGTG | 1 cut(s) | 817 |
| PmlI | CACGTG | 1 cut(s) | 817 |
| PpsI | GAGTC | 3 cut(s) | 493, 1466, 2141 |
| Ppu21I | YACGTR | 2 cut(s) | 817, 1557 |
| PpuMI | RGGWCCY | 3 cut(s) | 1391, 1635, 1723 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1476 |
| Psp5II | RGGWCCY | 3 cut(s) | 1391, 1635, 1723 |
| Psp6I | CCWGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| PspCI | CACGTG | 1 cut(s) | 817 |
| PspFI | CCCAGC | 1 cut(s) | 1835 |
| PspGI | CCWGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| PspPI | GGNCC | 6 cut(s) | 1391, 1635, 1649, 1723, 1838, 2695 |
| PspPPI | RGGWCCY | 3 cut(s) | 1391, 1635, 1723 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 28, 60 |
| PstI | CTGCAG | 4 cut(s) | 182, 1026, 1462, 1608 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1726, 2585 |
| PsuI | RGATCY | 4 cut(s) | 1330, 1507, 1820, 2662 |
| PteI | GCGCGC | 1 cut(s) | 938 |
| PvuII | CAGCTG | 1 cut(s) | 1294 |
| RsaI | GTAC | 5 cut(s) | 433, 795, 1972, 2206, 2714 |
| RsaNI | GTAC | 5 cut(s) | 432, 794, 1971, 2205, 2713 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2263, 2478 |
| SacII | CCGCGG | 1 cut(s) | 1004 |
| SalI | GTCGAC | 1 cut(s) | 1904 |
| SaqAI | TTAA | 4 cut(s) | 341, 674, 2034, 2397 |
| Sau3AI | GATC | 9 cut(s) | 77, 297, 468, 668, 1012, 1330, 1507, 1820, 2662 |
| Sau96I | GGNCC | 6 cut(s) | 1391, 1635, 1649, 1723, 1838, 2695 |
| SchI | GAGTC | 3 cut(s) | 494, 1466, 2141 |
| ScrFI | CCNGG | 6 cut(s) | 242, 1335, 1425, 1948, 2111, 2199 |
| SduI | GDGCHC | 6 cut(s) | 772, 816, 1803, 1867, 1967, 1994 |
| SfaNI | GCATC | 7 cut(s) | 200, 1081, 1376, 2095, 2298, 2503, 2572 |
| SfcI | CTRYAG | 4 cut(s) | 178, 1022, 1458, 1604 |
| Sfr303I | CCGCGG | 1 cut(s) | 1004 |
| SfuI | TTCGAA | 1 cut(s) | 1360 |
| SgrBI | CCGCGG | 1 cut(s) | 1004 |
| SinI | GGWCC | 3 cut(s) | 1391, 1635, 1723 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2263, 2478 |
| SmlI | CTYRAG | 1 cut(s) | 2574 |
| SmoI | CTYRAG | 1 cut(s) | 2574 |
| SnaBI | TACGTA | 1 cut(s) | 1557 |
| SseBI | AGGCCT | 1 cut(s) | 1170 |
| SspMI | CTAG | 6 cut(s) | 222, 351, 1086, 1443, 1476, 2115 |
| StuI | AGGCCT | 1 cut(s) | 1170 |
| StyD4I | CCNGG | 6 cut(s) | 240, 1333, 1423, 1946, 2109, 2197 |
| TaiI | ACGT | 5 cut(s) | 819, 1214, 1403, 1559, 1911 |
| TaqI | TCGA | 4 cut(s) | 553, 1099, 1360, 1905 |
| TaqII | GACCGA | 1 cut(s) | 372 |
| TatI | WGTACW | 4 cut(s) | 793, 1970, 2204, 2712 |
| TauI | GCSGC | 2 cut(s) | 1003, 2696 |
| Tru1I | TTAA | 4 cut(s) | 341, 674, 2034, 2397 |
| Tru9I | TTAA | 4 cut(s) | 341, 674, 2034, 2397 |
| TscAI | CASTG | 8 cut(s) | 209, 1068, 1617, 1837, 1865, 1874, 2289, 2605 |
| TseFI | GTSAC | 9 cut(s) | 353, 1267, 1312, 1469, 1580, 1762, 2144, 2189, 2795 |
| Tsp45I | GTSAC | 9 cut(s) | 353, 1267, 1312, 1469, 1580, 1762, 2144, 2189, 2795 |
| TspGWI | ACGGA | 1 cut(s) | 2562 |
| TspRI | CASTG | 8 cut(s) | 209, 1068, 1617, 1837, 1865, 1874, 2289, 2605 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1540 |
| VpaK11BI | GGWCC | 3 cut(s) | 1391, 1635, 1723 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 960 |
| XceI | RCATGY | 3 cut(s) | 1131, 1387, 1935 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 662 |
| XmiI | GTMKAC | 2 cut(s) | 730, 1905 |
| XmnI | GAANNNNTTC | 3 cut(s) | 609, 1170, 1686 |
| XspI | CTAG | 6 cut(s) | 222, 351, 1086, 1443, 1476, 2115 |
| Zsp2I | ATGCAT | 1 cut(s) | 1677 |