CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 |
| malus_domestica | MD03G1051600.v1.1 MD11G1053500.v1.1 MD11G1053700.v1.1 |
| prunus_persica | Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 |
| pyrus_communis | pycom03g04100 pycom11g04330 |
| rosa_chinensis | RchiOBHm_Chr5g0073201 |
| rosa_laevigata | RLG00000036373 |
| rosa_multiflora | Rmu_sc0001887.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00007990 |
| rosa_rugosa | Rorug05G0422000 Rorug05G0422100 |
| rosa_samantha | Rh5AG478900 Rh5BG499600 Rh5CG522800 Rh5DG511700 |
| rosa_wichuraiana | Rw5G044520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 934, 1920 |
| Acc36I | ACCTGC | 3 cut(s) | 880, 934, 1920 |
| AccB1I | GGYRCC | 2 cut(s) | 2372, 2468 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1510, 1781 |
| AccBSI | CCGCTC | 1 cut(s) | 386 |
| AccI | GTMKAC | 1 cut(s) | 700 |
| AccII | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| AclWI | GGATC | 5 cut(s) | 292, 676, 1295, 1472, 1485 |
| AcoI | YGGCCR | 3 cut(s) | 586, 968, 1199 |
| AcsI | RAATTY | 9 cut(s) | 413, 757, 1015, 1489, 1588, 1751, 2323, 2419, 2695 |
| AcuI | CTGAAG | 2 cut(s) | 951, 2070 |
| AfaI | GTAC | 4 cut(s) | 433, 765, 2176, 2684 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 605, 1290 |
| AjnI | CCWGG | 6 cut(s) | 240, 1303, 1393, 1916, 2079, 2167 |
| Alw21I | GWGCWC | 1 cut(s) | 1937 |
| Alw26I | GTCTC | 5 cut(s) | 792, 887, 1813, 2014, 2770 |
| AlwI | GGATC | 5 cut(s) | 292, 676, 1295, 1472, 1485 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2555 |
| AoxI | GGCC | 7 cut(s) | 68, 586, 968, 1138, 1199, 1808, 2664 |
| ApoI | RAATTY | 9 cut(s) | 413, 757, 1015, 1489, 1588, 1751, 2323, 2419, 2695 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 829, 861 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 609, 1140, 1656 |
| AspLEI | GCGC | 3 cut(s) | 910, 912, 2265 |
| AspS9I | GGNCC | 5 cut(s) | 1361, 1605, 1619, 1808, 2665 |
| AsuC2I | CCSGG | 1 cut(s) | 1609 |
| AsuHPI | GGTGA | 9 cut(s) | 404, 527, 804, 1286, 1451, 1475, 2153, 2777, 2846 |
| AsuII | TTCGAA | 1 cut(s) | 1330 |
| AvaII | GGWCC | 3 cut(s) | 1361, 1605, 1619 |
| BalI | TGGCCA | 2 cut(s) | 588, 1201 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanI | GGYRCC | 2 cut(s) | 2372, 2468 |
| BanII | GRGCYC | 4 cut(s) | 742, 1773, 1837, 1964 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 799, 831 |
| BauI | CACGAG | 2 cut(s) | 291, 1936 |
| Bbv12I | GWGCWC | 1 cut(s) | 1937 |
| BbvCI | CCTCAGC | 2 cut(s) | 1104, 1667 |
| BccI | CCATC | 8 cut(s) | 102, 712, 724, 751, 1504, 1512, 1819, 2233 |
| BceAI | ACGGC | 1 cut(s) | 2276 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 824, 858 |
| BciT130I | CCWGG | 6 cut(s) | 242, 1305, 1395, 1918, 2081, 2169 |
| BciVI | GTATCC | 1 cut(s) | 1516 |
| BclI | TGATCA | 1 cut(s) | 982 |
| BcnI | CCSGG | 1 cut(s) | 1609 |
| BcoDI | GTCTC | 5 cut(s) | 792, 887, 1813, 2014, 2770 |
| BfaI | CTAG | 6 cut(s) | 222, 351, 1056, 1413, 1446, 2085 |
| BfmI | CTRYAG | 4 cut(s) | 178, 992, 1428, 1574 |
| BfoI | RGCGCY | 1 cut(s) | 2266 |
| BfuAI | ACCTGC | 3 cut(s) | 880, 934, 1920 |
| BfuI | GTATCC | 1 cut(s) | 1516 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2663 |
| BglII | AGATCT | 2 cut(s) | 1790, 2632 |
| Bme1390I | CCNGG | 7 cut(s) | 242, 1305, 1395, 1609, 1918, 2081, 2169 |
| Bme18I | GGWCC | 3 cut(s) | 1361, 1605, 1619 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 605, 1290 |
| BmgT120I | GGNCC | 5 cut(s) | 1361, 1605, 1619, 1808, 2665 |
| BmiI | GGNNCC | 9 cut(s) | 739, 1362, 1363, 1479, 1607, 2140, 2374, 2470, 2521 |
| BmrFI | CCNGG | 7 cut(s) | 242, 1305, 1395, 1609, 1918, 2081, 2169 |
| BmrI | ACTGGG | 2 cut(s) | 649, 1815 |
| BmsI | GCATC | 7 cut(s) | 200, 1051, 1346, 2065, 2268, 2473, 2542 |
| BmuI | ACTGGG | 2 cut(s) | 649, 1815 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1978, 2010 |
| BpmI | CTGGAG | 1 cut(s) | 1682 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1104, 1667 |
| Bpu14I | TTCGAA | 1 cut(s) | 1330 |
| BpuEI | CTTGAG | 1 cut(s) | 2529 |
| BpuMI | CCSGG | 1 cut(s) | 1609 |
| BsaAI | YACGTR | 1 cut(s) | 1527 |
| BsaI | GGTCTC | 1 cut(s) | 792 |
| BsaJI | CCNNGG | 7 cut(s) | 583, 971, 1394, 1917, 2079, 2167, 2661 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 861, 891, 2094, 2124 |
| Bse1I | ACTGG | 5 cut(s) | 655, 971, 1580, 1810, 2568 |
| Bse3DI | GCAATG | 4 cut(s) | 264, 912, 2245, 2489 |
| BseBI | CCWGG | 6 cut(s) | 242, 1305, 1395, 1918, 2081, 2169 |
| BseDI | CCNNGG | 7 cut(s) | 583, 971, 1394, 1917, 2079, 2167, 2661 |
| BseGI | GGATG | 7 cut(s) | 215, 704, 1224, 2080, 2152, 2359, 2455 |
| BseMI | GCAATG | 4 cut(s) | 264, 912, 2245, 2489 |
| BseNI | ACTGG | 5 cut(s) | 655, 971, 1580, 1810, 2568 |
| BsePI | GCGCGC | 1 cut(s) | 908 |
| BseRI | GAGGAG | 1 cut(s) | 1967 |
| BsgI | GTGCAG | 1 cut(s) | 1929 |
| Bsh1236I | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| BshFI | GGCC | 7 cut(s) | 70, 588, 970, 1140, 1201, 1810, 2666 |
| BshNI | GGYRCC | 2 cut(s) | 2372, 2468 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1937 |
| BsiSI | CCGG | 1 cut(s) | 1609 |
| BslFI | GGGAC | 4 cut(s) | 49, 188, 1374, 2831 |
| BsmAI | GTCTC | 5 cut(s) | 792, 887, 1813, 2014, 2770 |
| BsmBI | CGTCTC | 2 cut(s) | 2014, 2770 |
| BsmFI | GGGAC | 4 cut(s) | 49, 188, 1374, 2831 |
| BsnI | GGCC | 7 cut(s) | 70, 588, 970, 1140, 1201, 1810, 2666 |
| Bso31I | GGTCTC | 1 cut(s) | 792 |
| Bsp119I | TTCGAA | 1 cut(s) | 1330 |
| Bsp1286I | GDGCHC | 5 cut(s) | 742, 1773, 1837, 1937, 1964 |
| Bsp143I | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| BspANI | GGCC | 7 cut(s) | 70, 588, 970, 1140, 1201, 1810, 2666 |
| BspFNI | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| BspLI | GGNNCC | 9 cut(s) | 739, 1362, 1363, 1479, 1607, 2140, 2374, 2470, 2521 |
| BspMAI | CTGCAG | 4 cut(s) | 182, 996, 1432, 1578 |
| BspMI | ACCTGC | 3 cut(s) | 880, 934, 1920 |
| BspPI | GGATC | 5 cut(s) | 292, 676, 1295, 1472, 1485 |
| BspT104I | TTCGAA | 1 cut(s) | 1330 |
| BspT107I | GGYRCC | 2 cut(s) | 2372, 2468 |
| BspTNI | GGTCTC | 1 cut(s) | 792 |
| BsrBI | CCGCTC | 1 cut(s) | 386 |
| BsrDI | GCAATG | 4 cut(s) | 264, 912, 2245, 2489 |
| BsrI | ACTGG | 5 cut(s) | 655, 971, 1580, 1810, 2568 |
| BssECI | CCNNGG | 7 cut(s) | 583, 971, 1394, 1917, 2079, 2167, 2661 |
| BssHII | GCGCGC | 1 cut(s) | 908 |
| BssMI | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| BssNAI | GTATAC | 1 cut(s) | 701 |
| BssSI | CACGAG | 2 cut(s) | 291, 1936 |
| BssT1I | CCWWGG | 1 cut(s) | 583 |
| Bst1107I | GTATAC | 1 cut(s) | 701 |
| Bst2BI | CACGAG | 2 cut(s) | 291, 1936 |
| Bst2UI | CCWGG | 6 cut(s) | 242, 1305, 1395, 1918, 2081, 2169 |
| Bst4CI | ACNGT | 9 cut(s) | 206, 281, 400, 436, 1035, 1282, 1830, 2254, 2849 |
| Bst6I | CTCTTC | 2 cut(s) | 1752, 2012 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 186, 2244, 2555 |
| BstBAI | YACGTR | 1 cut(s) | 1527 |
| BstBI | TTCGAA | 1 cut(s) | 1330 |
| BstC8I | GCNNGC | 8 cut(s) | 68, 910, 1269, 2126, 2216, 2524, 2646, 2797 |
| BstDSI | CCRYGG | 2 cut(s) | 971, 2661 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 930 |
| BstF5I | GGATG | 7 cut(s) | 215, 704, 1224, 2080, 2152, 2359, 2455 |
| BstFNI | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| BstH2I | RGCGCY | 1 cut(s) | 2266 |
| BstHHI | GCGC | 3 cut(s) | 910, 912, 2265 |
| BstKTI | GATC | 9 cut(s) | 80, 300, 471, 671, 985, 1303, 1480, 1793, 2635 |
| BstMAI | GTCTC | 5 cut(s) | 792, 887, 1813, 2014, 2770 |
| BstMBI | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| BstNI | CCWGG | 6 cut(s) | 242, 1305, 1395, 1918, 2081, 2169 |
| BstNSI | RCATGY | 4 cut(s) | 788, 1101, 1357, 1905 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1446 |
| BstSCI | CCNGG | 7 cut(s) | 240, 1303, 1393, 1607, 1916, 2079, 2167 |
| BstSFI | CTRYAG | 4 cut(s) | 178, 992, 1428, 1574 |
| BstSNI | TACGTA | 1 cut(s) | 1527 |
| BstUI | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| BstX2I | RGATCY | 4 cut(s) | 1300, 1477, 1790, 2632 |
| BstYI | RGATCY | 4 cut(s) | 1300, 1477, 1790, 2632 |
| BstZ17I | GTATAC | 1 cut(s) | 701 |
| BsuI | GTATCC | 1 cut(s) | 1516 |
| BsuRI | GGCC | 7 cut(s) | 70, 588, 970, 1140, 1201, 1810, 2666 |
| BtgI | CCRYGG | 2 cut(s) | 971, 2661 |
| BtsCI | GGATG | 7 cut(s) | 215, 704, 1224, 2080, 2152, 2359, 2455 |
| BtsIMutI | CAGTG | 7 cut(s) | 202, 1031, 1587, 1835, 1844, 2259, 2575 |
| BveI | ACCTGC | 3 cut(s) | 880, 934, 1920 |
| Cac8I | GCNNGC | 8 cut(s) | 68, 910, 1269, 2126, 2216, 2524, 2646, 2797 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2555 |
| CfoI | GCGC | 3 cut(s) | 910, 912, 2265 |
| Cfr13I | GGNCC | 5 cut(s) | 1361, 1605, 1619, 1808, 2665 |
| Cfr42I | CCGCGG | 2 cut(s) | 974, 2664 |
| CseI | GACGC | 2 cut(s) | 1705, 2288 |
| Csp6I | GTAC | 4 cut(s) | 432, 764, 2175, 2683 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 355, 390 |
| CviQI | GTAC | 4 cut(s) | 432, 764, 2175, 2683 |
| DpnI | GATC | 9 cut(s) | 79, 299, 470, 670, 984, 1302, 1479, 1792, 2634 |
| DpnII | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| DriI | GACNNNNNGTC | 2 cut(s) | 605, 1290 |
| EaeI | YGGCCR | 3 cut(s) | 586, 968, 1199 |
| Eam1104I | CTCTTC | 2 cut(s) | 1752, 2012 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 605, 1290 |
| EarI | CTCTTC | 2 cut(s) | 1752, 2012 |
| Eco105I | TACGTA | 1 cut(s) | 1527 |
| Eco130I | CCWWGG | 1 cut(s) | 583 |
| Eco147I | AGGCCT | 1 cut(s) | 1140 |
| Eco24I | GRGCYC | 4 cut(s) | 742, 1773, 1837, 1964 |
| Eco31I | GGTCTC | 1 cut(s) | 792 |
| Eco47I | GGWCC | 3 cut(s) | 1361, 1605, 1619 |
| Eco57I | CTGAAG | 2 cut(s) | 951, 2070 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 930 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1361, 1605 |
| EcoRI | GAATTC | 4 cut(s) | 1015, 1588, 2323, 2419 |
| EcoRII | CCWGG | 6 cut(s) | 240, 1303, 1393, 1916, 2079, 2167 |
| EcoT14I | CCWWGG | 1 cut(s) | 583 |
| EcoT22I | ATGCAT | 1 cut(s) | 1647 |
| EcoT38I | GRGCYC | 4 cut(s) | 742, 1773, 1837, 1964 |
| ErhI | CCWWGG | 1 cut(s) | 583 |
| Esp3I | CGTCTC | 2 cut(s) | 2014, 2770 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2718, 2750 |
| FaqI | GGGAC | 4 cut(s) | 49, 188, 1374, 2831 |
| FauI | CCCGC | 2 cut(s) | 1057, 2198 |
| FauNDI | CATATG | 4 cut(s) | 121, 693, 1458, 2400 |
| FbaI | TGATCA | 1 cut(s) | 982 |
| FblI | GTMKAC | 1 cut(s) | 700 |
| FokI | GGATG | 7 cut(s) | 222, 691, 1231, 2087, 2139, 2366, 2462 |
| FriOI | GRGCYC | 4 cut(s) | 742, 1773, 1837, 1964 |
| FspBI | CTAG | 6 cut(s) | 222, 351, 1056, 1413, 1446, 2085 |
| GlaI | GCGC | 3 cut(s) | 909, 911, 2264 |
| GsuI | CTGGAG | 1 cut(s) | 1682 |
| HaeII | RGCGCY | 1 cut(s) | 2266 |
| HaeIII | GGCC | 7 cut(s) | 70, 588, 970, 1140, 1201, 1810, 2666 |
| HapII | CCGG | 1 cut(s) | 1609 |
| HgaI | GACGC | 2 cut(s) | 1705, 2288 |
| HhaI | GCGC | 3 cut(s) | 910, 912, 2265 |
| Hin6I | GCGC | 3 cut(s) | 908, 910, 2263 |
| HinP1I | GCGC | 3 cut(s) | 908, 910, 2263 |
| HincII | GTYRAC | 2 cut(s) | 688, 1876 |
| HindII | GTYRAC | 2 cut(s) | 688, 1876 |
| HindIII | AAGCTT | 1 cut(s) | 2642 |
| HpaII | CCGG | 1 cut(s) | 1609 |
| HphI | GGTGA | 9 cut(s) | 404, 527, 804, 1286, 1451, 1475, 2153, 2777, 2846 |
| HpyCH4III | ACNGT | 9 cut(s) | 206, 281, 400, 436, 1035, 1282, 1830, 2254, 2849 |
| HpyCH4IV | ACGT | 3 cut(s) | 1181, 1370, 1526 |
| HpySE526I | ACGT | 3 cut(s) | 1181, 1370, 1526 |
| HspAI | GCGC | 3 cut(s) | 908, 910, 2263 |
| KflI | GGGWCCC | 1 cut(s) | 1361 |
| Ksp22I | TGATCA | 1 cut(s) | 982 |
| KspI | CCGCGG | 2 cut(s) | 974, 2664 |
| Kzo9I | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| LmnI | GCTCC | 7 cut(s) | 113, 737, 1007, 1663, 1856, 2138, 2519 |
| LweI | GCATC | 7 cut(s) | 200, 1051, 1346, 2065, 2268, 2473, 2542 |
| MaeI | CTAG | 6 cut(s) | 222, 351, 1056, 1413, 1446, 2085 |
| MaeII | ACGT | 3 cut(s) | 1181, 1370, 1526 |
| MalI | GATC | 9 cut(s) | 79, 299, 470, 670, 984, 1302, 1479, 1792, 2634 |
| MbiI | CCGCTC | 1 cut(s) | 386 |
| MboI | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| MfeI | CAATTG | 2 cut(s) | 422, 1970 |
| MflI | RGATCY | 4 cut(s) | 1300, 1477, 1790, 2632 |
| MhlI | GDGCHC | 5 cut(s) | 742, 1773, 1837, 1937, 1964 |
| MlsI | TGGCCA | 2 cut(s) | 588, 1201 |
| MluNI | TGGCCA | 2 cut(s) | 588, 1201 |
| MlyI | GAGTC | 3 cut(s) | 494, 1436, 2111 |
| MmeI | TCCRAC | 5 cut(s) | 149, 533, 850, 1274, 2116 |
| Mox20I | TGGCCA | 2 cut(s) | 588, 1201 |
| Mph1103I | ATGCAT | 1 cut(s) | 1647 |
| MroXI | GAANNNNTTC | 3 cut(s) | 609, 1140, 1656 |
| MscI | TGGCCA | 2 cut(s) | 588, 1201 |
| MseI | TTAA | 2 cut(s) | 341, 2004 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2233, 2352, 2448 |
| Msp20I | TGGCCA | 2 cut(s) | 588, 1201 |
| MspA1I | CMGCKG | 3 cut(s) | 973, 2284, 2663 |
| MspI | CCGG | 1 cut(s) | 1609 |
| MspR9I | CCNGG | 7 cut(s) | 242, 1305, 1395, 1609, 1918, 2081, 2169 |
| MunI | CAATTG | 2 cut(s) | 422, 1970 |
| MvaI | CCWGG | 6 cut(s) | 242, 1305, 1395, 1918, 2081, 2169 |
| MvnI | CGCG | 4 cut(s) | 910, 973, 2313, 2663 |
| NciI | CCSGG | 1 cut(s) | 1609 |
| NdeI | CATATG | 4 cut(s) | 121, 693, 1458, 2400 |
| NdeII | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| NlaIV | GGNNCC | 9 cut(s) | 739, 1362, 1363, 1479, 1607, 2140, 2374, 2470, 2521 |
| NsiI | ATGCAT | 1 cut(s) | 1647 |
| NspI | RCATGY | 4 cut(s) | 788, 1101, 1357, 1905 |
| NspV | TTCGAA | 1 cut(s) | 1330 |
| PaqCI | CACCTGC | 2 cut(s) | 934, 1920 |
| PauI | GCGCGC | 1 cut(s) | 908 |
| PceI | AGGCCT | 1 cut(s) | 1140 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 35 |
| PdmI | GAANNNNTTC | 3 cut(s) | 609, 1140, 1656 |
| PfeI | GAWTC | 9 cut(s) | 536, 578, 946, 1153, 1420, 1922, 2357, 2404, 2500 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1510, 1781 |
| PfoI | TCCNGGA | 1 cut(s) | 1303 |
| PleI | GAGTC | 3 cut(s) | 493, 1436, 2111 |
| PpsI | GAGTC | 3 cut(s) | 493, 1436, 2111 |
| Ppu21I | YACGTR | 1 cut(s) | 1527 |
| PpuMI | RGGWCCY | 2 cut(s) | 1361, 1605 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1446 |
| Psp5II | RGGWCCY | 2 cut(s) | 1361, 1605 |
| Psp6I | CCWGG | 6 cut(s) | 240, 1303, 1393, 1916, 2079, 2167 |
| PspGI | CCWGG | 6 cut(s) | 240, 1303, 1393, 1916, 2079, 2167 |
| PspN4I | GGNNCC | 9 cut(s) | 739, 1362, 1363, 1479, 1607, 2140, 2374, 2470, 2521 |
| PspPI | GGNCC | 5 cut(s) | 1361, 1605, 1619, 1808, 2665 |
| PspPPI | RGGWCCY | 2 cut(s) | 1361, 1605 |
| PstI | CTGCAG | 4 cut(s) | 182, 996, 1432, 1578 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2555 |
| PsuI | RGATCY | 4 cut(s) | 1300, 1477, 1790, 2632 |
| PteI | GCGCGC | 1 cut(s) | 908 |
| RsaI | GTAC | 4 cut(s) | 433, 765, 2176, 2684 |
| RsaNI | GTAC | 4 cut(s) | 432, 764, 2175, 2683 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2233, 2352, 2448 |
| SacII | CCGCGG | 2 cut(s) | 974, 2664 |
| SaqAI | TTAA | 2 cut(s) | 341, 2004 |
| Sau3AI | GATC | 9 cut(s) | 77, 297, 468, 668, 982, 1300, 1477, 1790, 2632 |
| Sau96I | GGNCC | 5 cut(s) | 1361, 1605, 1619, 1808, 2665 |
| SchI | GAGTC | 3 cut(s) | 494, 1436, 2111 |
| ScrFI | CCNGG | 7 cut(s) | 242, 1305, 1395, 1609, 1918, 2081, 2169 |
| SduI | GDGCHC | 5 cut(s) | 742, 1773, 1837, 1937, 1964 |
| SfaNI | GCATC | 7 cut(s) | 200, 1051, 1346, 2065, 2268, 2473, 2542 |
| SfcI | CTRYAG | 4 cut(s) | 178, 992, 1428, 1574 |
| Sfr303I | CCGCGG | 2 cut(s) | 974, 2664 |
| SfuI | TTCGAA | 1 cut(s) | 1330 |
| SgrBI | CCGCGG | 2 cut(s) | 974, 2664 |
| SinI | GGWCC | 3 cut(s) | 1361, 1605, 1619 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2233, 2352, 2448 |
| SmlI | CTYRAG | 1 cut(s) | 2544 |
| SmoI | CTYRAG | 1 cut(s) | 2544 |
| SnaBI | TACGTA | 1 cut(s) | 1527 |
| SseBI | AGGCCT | 1 cut(s) | 1140 |
| SspMI | CTAG | 6 cut(s) | 222, 351, 1056, 1413, 1446, 2085 |
| StuI | AGGCCT | 1 cut(s) | 1140 |
| StyD4I | CCNGG | 7 cut(s) | 240, 1303, 1393, 1607, 1916, 2079, 2167 |
| StyI | CCWWGG | 1 cut(s) | 583 |
| TaaI | ACNGT | 9 cut(s) | 206, 281, 400, 436, 1035, 1282, 1830, 2254, 2849 |
| TaiI | ACGT | 3 cut(s) | 1184, 1373, 1529 |
| TaqI | TCGA | 4 cut(s) | 553, 1069, 1330, 1586 |
| TaqII | GACCGA | 1 cut(s) | 372 |
| TatI | WGTACW | 2 cut(s) | 2174, 2682 |
| TauI | GCSGC | 3 cut(s) | 653, 973, 2666 |
| TfiI | GAWTC | 9 cut(s) | 536, 578, 946, 1153, 1420, 1922, 2357, 2404, 2500 |
| Tru1I | TTAA | 2 cut(s) | 341, 2004 |
| Tru9I | TTAA | 2 cut(s) | 341, 2004 |
| TscAI | CASTG | 7 cut(s) | 209, 1038, 1587, 1835, 1844, 2259, 2575 |
| TspRI | CASTG | 7 cut(s) | 209, 1038, 1587, 1835, 1844, 2259, 2575 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1510, 1781 |
| VpaK11BI | GGWCC | 3 cut(s) | 1361, 1605, 1619 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 930 |
| XapI | RAATTY | 9 cut(s) | 413, 757, 1015, 1489, 1588, 1751, 2323, 2419, 2695 |
| XceI | RCATGY | 4 cut(s) | 788, 1101, 1357, 1905 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 662 |
| XmiI | GTMKAC | 1 cut(s) | 700 |
| XmnI | GAANNNNTTC | 3 cut(s) | 609, 1140, 1656 |
| XspI | CTAG | 6 cut(s) | 222, 351, 1056, 1413, 1446, 2085 |
| Zsp2I | ATGCAT | 1 cut(s) | 1647 |