Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Forward (+)

5500327 .. 5505933

Gene Structure 5607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G081100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCAAACAATTCCTCCAATGGGGTGCACCAGACCACAACAAAGTCTCCTCCATTGCCATCCCCTTTGCGTTTTTCCAAGTTTTTTCAGTCCAATATGAGAATTTTGGTTACTGGGGGAGCTGGATTCATCGGTTCTCACCTGGTTGACAGATTAATGGAAAATGAAAAGAATGAGGTTATTGTTGTTGACAACTACTTCACTGGCTCCAAGGACAATCTGAAAAAATGGATTGGTCATCCCAGATTTGAGCTAATTCGTCATGATGTCACAGAGACATTGTTGGTCGAAGTTGATCGAATTTACCATCTTGCTTGCCCAGCTTCTCCAATTTTCTATAAATACAATCCTGTAAAGACAATAAAAACAAATGTGATTGGCACGCTGAACATGCTTGGACTTGCCAAGCGAGTTGGAGCAAGGATTTTGCTGACATCAACTTCAGAGGTATATGGAGATCCTCTTGTGCATCCACAACCTGAAAGCTATTGGGGTAATGTTAACCCAATTGGAGTAAGGAGCTGCTATGATGAGGGGAAGCGTGTTGCTGAGACCTTGATGTTCGACTATCATAGGCAGCATGGGATAGAAATACGTATTGCCAGAATCTTCAACACGTATGGCCCTCGCATGAATATTGATGATGGGCGTGTAGTCAGCAATTTTATAGCCCAAGCACTTCGTGATGAACCCTTGACAGTCCAAAATCCTGGGACTCAAACTCGCAGCTTCTGTTATGTCTCTGACATGGTTGATGGCCTCATTCGTCTCATGGAAGGAGAGCACACTGGACCCATTAACATTGGAAACCCAGGTGAATTTACAATGCTTGAACTTGCAGAGACAGTGAAGGAGCTCATCAACCCTGGGGTGGAGATAAAGAGGGTGGAGAACACTCCTGATGATCCAAGACAGCGGAAACCCGACATCACAAAGGCAAAGGAATTGCTGGGTTGGGAGCCAAAGATCAAGTTACGGGAAGGCCTGCCTCTCATGGAGGAGGATTTCCGCTTGAGGCTGGGAGCAGCCAAAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

347

Amino Acids

39.1

Weight (kDa)

8.3

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	916, 1009
AclWI	GGATC	2 cut(s)	452, 899
AcsI	RAATTY	3 cut(s)	102, 300, 818
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	21, 871
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	2 cut(s)	613, 833
AjnI	CCWGG	4 cut(s)	141, 709, 811, 865
AluBI	AGCT	7 cut(s)	122, 253, 323, 486, 522, 729, 856
AluI	AGCT	7 cut(s)	122, 253, 323, 486, 522, 729, 856
Alw21I	GWGCWC	3 cut(s)	30, 786, 858
Alw26I	GTCTC	6 cut(s)	51, 269, 545, 745, 773, 836
Alw44I	GTGCAC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	452, 899
AlwNI	CAGNNNCTG	1 cut(s)	732
AoxI	GGCC	3 cut(s)	622, 757, 982
ApaLI	GTGCAC	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	522, 577, 726, 1025
ApoI	RAATTY	3 cut(s)	102, 300, 818
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	623, 791
AsuHPI	GGTGA	2 cut(s)	131, 827
AvaII	GGWCC	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	858
Bbv12I	GWGCWC	3 cut(s)	30, 786, 858
BbvI	GCAGC	4 cut(s)	509, 589, 738, 1037
BccI	CCATC	4 cut(s)	67, 315, 638, 749
BciT130I	CCWGG	4 cut(s)	143, 711, 813, 867
BcoDI	GTCTC	6 cut(s)	51, 269, 545, 745, 773, 836
BisI	GCNGC	4 cut(s)	523, 578, 727, 1026
BlsI	GCNGC	4 cut(s)	524, 579, 728, 1027
Bme1390I	CCNGG	4 cut(s)	143, 711, 813, 867
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	623, 791
BmiI	GGNNCC	3 cut(s)	208, 793, 960
BmrFI	CCNGG	4 cut(s)	143, 711, 813, 867
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	1033
BsaAI	YACGTR	2 cut(s)	596, 618
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	210, 710, 811, 865, 866
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 871
Bse1I	ACTGG	3 cut(s)	118, 208, 793
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	4 cut(s)	143, 711, 813, 867
BseDI	CCNNGG	5 cut(s)	210, 710, 811, 865, 866
BseGI	GGATG	3 cut(s)	59, 238, 469
BseLI	CCNNNNNNNGG	2 cut(s)	21, 871
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	118, 208, 793
BseRI	GAGGAG	2 cut(s)	39, 1013
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	4 cut(s)	509, 589, 738, 1037
BseYI	CCCAGC	3 cut(s)	319, 949, 1018
BshFI	GGCC	3 cut(s)	624, 759, 984
BsiHKAI	GWGCWC	3 cut(s)	30, 786, 858
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	21, 871
BsmAI	GTCTC	6 cut(s)	51, 269, 545, 745, 773, 836
BsmBI	CGTCTC	1 cut(s)	773
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	624, 759, 984
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	30, 786, 858
Bsp143I	GATC	4 cut(s)	295, 457, 904, 966
BspACI	CCGC	2 cut(s)	916, 1009
BspANI	GGCC	3 cut(s)	624, 759, 984
BspCNI	CTCAG	1 cut(s)	541
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	208, 793, 960
BspPI	GGATC	2 cut(s)	452, 899
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	118, 208, 793
BssECI	CCNNGG	5 cut(s)	210, 710, 811, 865, 866
BssMI	GATC	4 cut(s)	295, 457, 904, 966
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	143, 711, 813, 867
Bst4CI	ACNGT	2 cut(s)	700, 847
BstBAI	YACGTR	2 cut(s)	596, 618
BstC8I	GCNNGC	3 cut(s)	316, 383, 986
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	59, 238, 469
BstKTI	GATC	4 cut(s)	298, 460, 907, 969
BstMAI	GTCTC	6 cut(s)	51, 269, 545, 745, 773, 836
BstMBI	GATC	4 cut(s)	295, 457, 904, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 391
BstNI	CCWGG	4 cut(s)	143, 711, 813, 867
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	4 cut(s)	141, 709, 811, 865
BstSLI	GKGCMC	1 cut(s)	30
BstSNI	TACGTA	1 cut(s)	596
BstV1I	GCAGC	4 cut(s)	509, 589, 738, 1037
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	624, 759, 984
BtsCI	GGATG	3 cut(s)	59, 238, 469
BtsIMutI	CAGTG	3 cut(s)	201, 786, 852
Cac8I	GCNNGC	3 cut(s)	316, 383, 986
CaiI	CAGNNNCTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	623, 791
CsiI	ACCWGGT	1 cut(s)	141
CviAII	CATG	7 cut(s)	263, 391, 581, 631, 748, 772, 994
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	4 cut(s)	297, 459, 906, 968
DpnII	GATC	4 cut(s)	295, 457, 904, 966
DraIII	CACNNNGTG	1 cut(s)	683
Ecl136II	GAGCTC	1 cut(s)	856
Eco105I	TACGTA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	984
Eco24I	GRGCYC	1 cut(s)	858
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	856
EcoRII	CCWGG	4 cut(s)	141, 709, 811, 865
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	7 cut(s)	266, 394, 584, 634, 751, 775, 997
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	7 cut(s)	262, 390, 580, 630, 747, 771, 993
Fnu4HI	GCNGC	4 cut(s)	523, 578, 727, 1026
FokI	GGATG	3 cut(s)	46, 225, 456
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	523, 578, 727, 1026
GluI	GCNGC	4 cut(s)	523, 578, 727, 1026
GsaI	CCCAGC	3 cut(s)	323, 953, 1022
HaeIII	GGCC	3 cut(s)	624, 759, 984
Hin1II	CATG	7 cut(s)	266, 394, 584, 634, 751, 775, 997
HincII	GTYRAC	3 cut(s)	148, 190, 502
HindII	GTYRAC	3 cut(s)	148, 190, 502
HinfI	GANTC	3 cut(s)	126, 606, 715
HpaI	GTTAAC	1 cut(s)	502
HphI	GGTGA	2 cut(s)	131, 827
Hpy166II	GTNNAC	4 cut(s)	28, 148, 190, 502
Hpy188I	TCNGA	3 cut(s)	222, 445, 745
Hpy188III	TCNNGA	3 cut(s)	263, 683, 899
Hpy8I	GTNNAC	4 cut(s)	28, 148, 190, 502
HpyAV	CCTTC	3 cut(s)	770, 844, 974
HpyCH4III	ACNGT	2 cut(s)	700, 847
HpyCH4IV	ACGT	2 cut(s)	595, 617
HpyCH4V	TGCA	3 cut(s)	28, 469, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 391
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	2 cut(s)	595, 617
Hsp92II	CATG	7 cut(s)	266, 394, 584, 634, 751, 775, 997
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	295, 457, 904, 966
LmnI	GCTCC	7 cut(s)	119, 212, 416, 519, 853, 958, 1022
Lsp1109I	GCAGC	4 cut(s)	509, 589, 738, 1037
LweI	GCATC	1 cut(s)	478
MabI	ACCWGGT	1 cut(s)	141
MaeII	ACGT	2 cut(s)	595, 617
MaeIII	GTNAC	3 cut(s)	109, 268, 972
MalI	GATC	4 cut(s)	297, 459, 906, 968
MboI	GATC	4 cut(s)	295, 457, 904, 966
MboII	GAAGA	1 cut(s)	601
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	3 cut(s)	30, 786, 858
MluCI	AATT	9 cut(s)	10, 102, 255, 300, 330, 507, 661, 818, 944
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	394
MseI	TTAA	3 cut(s)	155, 501, 798
MspA1I	CMGCKG	1 cut(s)	916
MspR9I	CCNGG	4 cut(s)	143, 711, 813, 867
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	4 cut(s)	143, 711, 813, 867
MwoI	GCNNNNNNNGC	2 cut(s)	320, 391
NdeII	GATC	4 cut(s)	295, 457, 904, 966
NlaIII	CATG	7 cut(s)	266, 394, 584, 634, 751, 775, 997
NlaIV	GGNNCC	3 cut(s)	208, 793, 960
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	262
PasI	CCCWGGG	1 cut(s)	866
PceI	AGGCCT	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	126, 606
PkrI	GCNGC	4 cut(s)	524, 579, 728, 1027
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	2 cut(s)	596, 618
PshBI	ATTAAT	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	4 cut(s)	141, 709, 811, 865
PspFI	CCCAGC	3 cut(s)	319, 949, 1018
PspGI	CCWGG	4 cut(s)	141, 709, 811, 865
PspN4I	GGNNCC	3 cut(s)	208, 793, 960
PspPI	GGNCC	2 cut(s)	623, 791
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	155, 501, 798
SatI	GCNGC	4 cut(s)	523, 578, 727, 1026
Sau3AI	GATC	4 cut(s)	295, 457, 904, 966
Sau96I	GGNCC	2 cut(s)	623, 791
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	4 cut(s)	143, 711, 813, 867
SduI	GDGCHC	3 cut(s)	30, 786, 858
SexAI	ACCWGGT	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SnaBI	TACGTA	1 cut(s)	596
Sse9I	AATT	9 cut(s)	10, 102, 255, 300, 330, 507, 661, 818, 944
SseBI	AGGCCT	1 cut(s)	984
SsiI	CCGC	2 cut(s)	916, 1009
SspI	AATATT	1 cut(s)	637
SstI	GAGCTC	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	984
StyD4I	CCNGG	4 cut(s)	141, 709, 811, 865
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	700, 847
TaiI	ACGT	2 cut(s)	598, 620
TaqI	TCGA	3 cut(s)	288, 298, 564
TasI	AATT	9 cut(s)	10, 102, 255, 300, 330, 507, 661, 818, 944
TfiI	GAWTC	2 cut(s)	126, 606
Tru1I	TTAA	3 cut(s)	155, 501, 798
Tru9I	TTAA	3 cut(s)	155, 501, 798
TscAI	CASTG	3 cut(s)	208, 793, 852
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	4 cut(s)	522, 577, 726, 1025
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	118, 180, 647, 702
TspRI	CASTG	3 cut(s)	208, 793, 852
VneI	GTGCAC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	791
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	3 cut(s)	102, 300, 818
XceI	RCATGY	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.