Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Reverse (-)

45614723 .. 45627826

Gene Structure 13104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0359100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGATCAATTCTCTTTCACTTATATGCCGTATAGGTTTGAATGTTGAAGTTGATCGGATACTGGAGATTGCTTGCATAGTTACCGATGGCAAACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTAAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGACGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCCAGCCTGTTCTCCCATGTAGTAGTTGATGTTAGCAGTGTTACAGCTCTATGCATTCGCTGGTATCCTAGAGATAAAAAGAAAGCGCCTTCTAAAGAAAATAAACACAGAGCCCTGGATGACATCAGGGAAAGCATCAAGGAACTGAAATACTACAAACAGAATATATTCAAAGCAATTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

181

Amino Acids

20.64

Weight (kDa)

8.89

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	12 - 168	5.7e-27	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	43, 50, 218, 529
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	2 cut(s)	242, 404
AluI	AGCT	2 cut(s)	242, 404
AoxI	GGCC	2 cut(s)	115, 357
ApaI	GGGCCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	115, 116
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	119, 472
BccI	CCATC	2 cut(s)	83, 154
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	473
BciVI	GTATCC	2 cut(s)	54, 432
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	446
BfuI	GTATCC	2 cut(s)	54, 432
Bme1390I	CCNGG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	115, 116
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	165, 481
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	119
BshFI	GGCC	2 cut(s)	117, 359
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	117, 359
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 472
Bsp143I	GATC	4 cut(s)	6, 55, 121, 252
BspANI	GGCC	2 cut(s)	117, 359
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	4 cut(s)	6, 55, 121, 252
Bst2UI	CCWGG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	76, 361
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	165, 481
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	4 cut(s)	9, 58, 124, 255
BstMBI	GATC	4 cut(s)	6, 55, 121, 252
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	119
BsuI	GTATCC	2 cut(s)	54, 432
BsuRI	GGCC	2 cut(s)	117, 359
BtsCI	GGATG	2 cut(s)	165, 481
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	76, 361
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	115, 116
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	346, 374
CviJI	RGCY	6 cut(s)	117, 242, 359, 363, 404, 470
CviKI_1	RGCY	6 cut(s)	117, 242, 359, 363, 404, 470
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	4 cut(s)	8, 57, 123, 254
DpnII	GATC	4 cut(s)	6, 55, 121, 252
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	119, 472
EcoO109I	RGGNCCY	2 cut(s)	115, 116
EcoRII	CCWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	119, 472
FaeI	CATG	2 cut(s)	349, 377
FatI	CATG	2 cut(s)	345, 373
FokI	GGATG	2 cut(s)	172, 488
FriOI	GRGCYC	2 cut(s)	119, 472
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	117, 359
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	349, 377
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	201, 322
Hpy188I	TCNGA	1 cut(s)	60
Hpy8I	GTNNAC	2 cut(s)	201, 322
HpyAV	CCTTC	2 cut(s)	227, 456
HpyCH4V	TGCA	3 cut(s)	78, 329, 411
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	349, 377
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	4 cut(s)	6, 55, 121, 252
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	82, 397
MalI	GATC	4 cut(s)	8, 57, 123, 254
MboI	GATC	4 cut(s)	6, 55, 121, 252
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	119, 472
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	4 cut(s)	10, 225, 260, 534
MluNI	TGGCCA	1 cut(s)	359
MnlI	CCTC	2 cut(s)	106, 303
Mox20I	TGGCCA	1 cut(s)	359
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	25
Msp20I	TGGCCA	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	6, 55, 121, 252
NlaIII	CATG	2 cut(s)	349, 377
NlaIV	GGNNCC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	349
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	117
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	115, 116
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	4 cut(s)	6, 55, 121, 252
Sau96I	GGNCC	2 cut(s)	115, 116
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	119, 472
SetI	ASST	4 cut(s)	40, 244, 295, 406
SfaNI	GCATC	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	10, 225, 260, 534
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	471
TasI	AATT	4 cut(s)	10, 225, 260, 534
TatI	WGTACW	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.