Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Reverse (-)

45635031 .. 45638208

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGAAATGCTAACGGCAGAGAAGAGGAGGAGGAGGAGGAGATCCAAGATGAGGTCGTCGTCAACGGCCAACTAGATATTGGGATGGAATCCTTGTTCTCTCCCCAGATTCCTGTAGCTCCGCTTCAAAGGGGTAAGGGCATTCCTGAATTTCCTCAAATGTTGACGACTGAATTTCAAGGTGTTCATCATCCTCCTGAACAAGGAATTCCCACCATGATTACATGGAACTATGGTGGGAACAATTTGGCTGTGGAGGGTTCTTGGGACAATTGGAAATCTAGGAAATCACTACAGAGATCTGGTAAGGATCATTCAGTTCTTTTGGTCTTGCCATCAGGCATATACCGGTACAAGTTCATCGTTGATGATGAACCGAGATATATCCCAGATCTTCCATTCATAGCTGATGAAATGGGCCATGTTTGTAATCTTCTTGATGTTCATGACTATGTGCCAGAAAATTTGGACAGTGTGGCTGAGTTTGAGGCTCCGGCTTCCCCAGAATCCAGCTATGATCAAGCATTTCCAGCTGAGGAAGATCTTACGAAGGAACCAGTGGTTATCCCACCACAGCTGCAACTGACTGTCCTTGGCATGGAGGATTCAAATGACGATTCTCCAAAGCCTCGACATGTTGTACTTAACCACCTTTTTATAGAAAAAGGATGGGCCTCACAATCTATGGTTTCCCTGGGACTGACTCACAGGTTTGAGTCTAAATATGTGACTGTTGTCCTATATAAATCACTTAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

253

Amino Acids

28.51

Weight (kDa)

4.63

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	70 - 150	9.1e-30	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	184 - 250	1.2e-21	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	37, 318
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	4 cut(s)	149, 173, 207, 463
AfaI	GTAC	2 cut(s)	353, 642
AfiI	CCNNNNNNNGG	3 cut(s)	52, 203, 598
AflIII	ACRYGT	1 cut(s)	634
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	128, 179, 609
AjnI	CCWGG	1 cut(s)	693
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	5 cut(s)	119, 407, 513, 533, 577
AluI	AGCT	5 cut(s)	119, 407, 513, 533, 577
AlwI	GGATC	2 cut(s)	37, 318
AoxI	GGCC	3 cut(s)	67, 418, 672
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	4 cut(s)	149, 173, 207, 463
AsiGI	ACCGGT	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	418, 672
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	3 cut(s)	79, 343, 663
BceAI	ACGGC	2 cut(s)	31, 82
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	517
BfaI	CTAG	2 cut(s)	74, 282
BfmI	CTRYAG	2 cut(s)	114, 293
BglII	AGATCT	3 cut(s)	299, 391, 541
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	418, 672
BmiI	GGNNCC	2 cut(s)	492, 555
BmrFI	CCNGG	1 cut(s)	695
BoxI	GACNNNNGTC	1 cut(s)	734
Bpu10I	CCTNAGC	1 cut(s)	534
BsaJI	CCNNGG	3 cut(s)	592, 693, 694
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 203, 598
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	592, 693, 694
BseGI	GGATG	3 cut(s)	90, 190, 674
BseLI	CCNNNNNNNGG	3 cut(s)	52, 203, 598
BseMII	CTCAG	2 cut(s)	471, 525
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	5 cut(s)	41, 44, 47, 50, 53
BseXI	GCAGC	1 cut(s)	564
BshFI	GGCC	3 cut(s)	69, 420, 674
BshTI	ACCGGT	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	349, 494
BslFI	GGGAC	2 cut(s)	281, 711
BslI	CCNNNNNNNGG	3 cut(s)	52, 203, 598
BsmFI	GGGAC	2 cut(s)	281, 711
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	69, 420, 674
Bsp143I	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	69, 420, 674
BspCNI	CTCAG	2 cut(s)	472, 526
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	492, 555
BspPI	GGATC	2 cut(s)	37, 318
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	592, 693, 694
BssMI	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	473, 589, 733
Bst6I	CTCTTC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	480, 534
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	90, 190, 674
BstKTI	GATC	6 cut(s)	45, 302, 313, 394, 520, 544
BstMBI	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	638
BstPAI	GACNNNNGTC	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	2 cut(s)	114, 293
BstV1I	GCAGC	1 cut(s)	564
BstX2I	RGATCY	4 cut(s)	42, 299, 391, 541
BstYI	RGATCY	4 cut(s)	42, 299, 391, 541
BsuRI	GGCC	3 cut(s)	69, 420, 674
BtsCI	GGATG	3 cut(s)	90, 190, 674
BtsIMutI	CAGTG	2 cut(s)	478, 564
CciI	TCATGA	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	418, 672
Csp6I	GTAC	2 cut(s)	352, 641
CspAI	ACCGGT	1 cut(s)	348
CviAII	CATG	6 cut(s)	217, 225, 422, 446, 598, 635
CviQI	GTAC	2 cut(s)	352, 641
DdeI	CTNAG	2 cut(s)	480, 534
DpnI	GATC	6 cut(s)	44, 301, 312, 393, 519, 543
DpnII	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	592
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	6 cut(s)	220, 228, 425, 449, 601, 638
FaqI	GGGAC	2 cut(s)	281, 711
FatI	CATG	6 cut(s)	216, 224, 421, 445, 597, 634
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	3 cut(s)	97, 177, 681
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	2 cut(s)	74, 282
GluI	GCNGC	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	69, 420, 674
HapII	CCGG	2 cut(s)	349, 494
Hin1II	CATG	6 cut(s)	220, 228, 425, 449, 601, 638
HincII	GTYRAC	2 cut(s)	64, 165
HindII	GTYRAC	2 cut(s)	64, 165
HinfI	GANTC	7 cut(s)	89, 109, 506, 605, 617, 703, 716
HpaII	CCGG	2 cut(s)	349, 494
Hpy166II	GTNNAC	2 cut(s)	64, 165
Hpy188III	TCNNGA	4 cut(s)	146, 197, 437, 446
Hpy8I	GTNNAC	2 cut(s)	64, 165
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	3 cut(s)	473, 589, 733
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	480, 534
Hsp92II	CATG	6 cut(s)	220, 228, 425, 449, 601, 638
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
LmnI	GCTCC	2 cut(s)	124, 496
Lsp1109I	GCAGC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	74, 282
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	6 cut(s)	44, 301, 312, 393, 519, 543
MboI	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
MboII	GAAGA	4 cut(s)	35, 386, 425, 551
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	4 cut(s)	42, 299, 391, 541
MluCI	AATT	6 cut(s)	149, 173, 207, 244, 271, 463
MlyI	GAGTC	2 cut(s)	697, 725
MseI	TTAA	2 cut(s)	645, 753
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	533, 577
MspI	CCGG	2 cut(s)	349, 494
MspR9I	CCNGG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
NlaIII	CATG	6 cut(s)	220, 228, 425, 449, 601, 638
NlaIV	GGNNCC	2 cut(s)	492, 555
NmuCI	GTSAC	1 cut(s)	727
NspI	RCATGY	1 cut(s)	638
PagI	TCATGA	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	694
PciI	ACATGT	1 cut(s)	634
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	5 cut(s)	89, 109, 506, 605, 617
PinAI	ACCGGT	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	579
PleI	GAGTC	2 cut(s)	697, 724
PpsI	GAGTC	2 cut(s)	697, 724
PscI	ACATGT	1 cut(s)	634
PshAI	GACNNNNGTC	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	2 cut(s)	492, 555
PspPI	GGNCC	2 cut(s)	418, 672
PsuI	RGATCY	4 cut(s)	42, 299, 391, 541
PvuII	CAGCTG	2 cut(s)	533, 577
RsaI	GTAC	2 cut(s)	353, 642
RsaNI	GTAC	2 cut(s)	352, 641
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	645, 753
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	6 cut(s)	42, 299, 310, 391, 517, 541
Sau96I	GGNCC	2 cut(s)	418, 672
SchI	GAGTC	2 cut(s)	697, 725
ScrFI	CCNGG	1 cut(s)	695
SfcI	CTRYAG	2 cut(s)	114, 293
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	6 cut(s)	149, 173, 207, 244, 271, 463
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	74, 282
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	3 cut(s)	473, 589, 733
TaqI	TCGA	1 cut(s)	631
TasI	AATT	6 cut(s)	149, 173, 207, 244, 271, 463
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	5 cut(s)	89, 109, 506, 605, 617
Tru1I	TTAA	2 cut(s)	645, 753
Tru9I	TTAA	2 cut(s)	645, 753
TscAI	CASTG	2 cut(s)	478, 564
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	6 cut(s)	176, 349, 387, 391, 426, 434
TspRI	CASTG	2 cut(s)	478, 564
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	4 cut(s)	149, 173, 207, 463
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	74, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.