Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Reverse (-)

12608175 .. 12651361

Gene Structure 43187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACCGAGTCTTGGGAGCATCAACTGCCATCCATTGCCCGTACCATCATTCACTCTCCAAAAGAATATACCCAGCACTCAATCCCCATTCCACATGTCACTGAAACATTGTTGGTTGAGGTTGATCGGATATACCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATATAATCCTGTAAAGCAAAGGGTGACAAGTTGTTGGCATCGCAAAATGCAGAGAGCCATCAGAGGTGTGCTATCGGCTTTTCTGTATCTTAAATTGATTGAGAAATACTCATTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

96

Amino Acids

11.34

Weight (kDa)

9.3

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	94
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	205
BccI	CCATC	4 cut(s)	37, 53, 144, 236
BmsI	GCATC	2 cut(s)	28, 217
BplI	GAGNNNNNCTC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	33
BseYI	CCCAGC	2 cut(s)	72, 148
BslI	CCNNNNNNNGG	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	33
BssMI	GATC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 149
BstNSI	RCATGY	2 cut(s)	98, 147
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	95, 144
CviJI	RGCY	3 cut(s)	152, 227, 248
CviKI_1	RGCY	3 cut(s)	152, 227, 248
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
FaeI	CATG	2 cut(s)	98, 147
FaiI	YATR	5 cut(s)	69, 96, 133, 145, 174
FatI	CATG	2 cut(s)	94, 143
FokI	GGATG	1 cut(s)	16
GsaI	CCCAGC	2 cut(s)	76, 152
Hin1II	CATG	2 cut(s)	98, 147
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	129, 233
HpyCH4V	TGCA	2 cut(s)	143, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 149
Hsp92II	CATG	2 cut(s)	98, 147
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	86, 162, 192
LweI	GCATC	2 cut(s)	28, 217
MaeIII	GTNAC	2 cut(s)	97, 193
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MluCI	AATT	2 cut(s)	159, 263
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	112, 227
MseI	TTAA	2 cut(s)	261, 289
MwoI	GCNNNNNNNGC	2 cut(s)	25, 149
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	98, 147
NmuCI	GTSAC	2 cut(s)	97, 193
NspI	RCATGY	2 cut(s)	98, 147
PaeI	GCATGC	1 cut(s)	147
PciI	ACATGT	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	94
PspFI	CCCAGC	2 cut(s)	72, 148
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	261, 289
Sau3AI	GATC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	17
SetI	ASST	3 cut(s)	123, 154, 238
SfaNI	GCATC	2 cut(s)	28, 217
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	159, 263
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	159, 263
Tru1I	TTAA	2 cut(s)	261, 289
Tru9I	TTAA	2 cut(s)	261, 289
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	97, 193
Tsp45I	GTSAC	2 cut(s)	97, 193
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	7
XceI	RCATGY	2 cut(s)	98, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.