Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002724.1

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Reverse (-)

127285 .. 128162

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002724.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgagaatcttggttactggaggagctagattcattggttctcacctggttgacagattaatggaaaatgaaaagaatgaggttattgttgttgataactacttcactggctccaaggacaatcttaaaaaatggattggtcatcccagatttgagcttattcgtcatgatgtcactgaaacattgttggttgaggttgatcggatataccatcttgcatgcccagcttctccaattttctacaaatataatcctgtaaagtcatgtgattggaaatttgccatccttatccctgcaaaagctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

102

Amino Acids

11.77

Weight (kDa)

8.6

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	26, 157, 227, 302
AluI	AGCT	4 cut(s)	26, 157, 227, 302
ApoI	RAATTY	1 cut(s)	275
AseI	ATTAAT	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	35
BccI	CCATC	2 cut(s)	219, 290
BciT130I	CCWGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	22, 112
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	142, 282
BseNI	ACTGG	2 cut(s)	22, 112
BseRI	GAGGAG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	22, 112
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	142, 282
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	142, 282
BtsIMutI	CAGTG	2 cut(s)	105, 174
Cac8I	GCNNGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	45
CviAII	CATG	3 cut(s)	167, 219, 264
CviJI	RGCY	5 cut(s)	26, 111, 157, 227, 302
CviKI_1	RGCY	5 cut(s)	26, 111, 157, 227, 302
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	170, 222, 267
FaiI	YATR	5 cut(s)	168, 208, 220, 249, 265
FatI	CATG	3 cut(s)	166, 218, 263
FokI	GGATG	2 cut(s)	129, 269
FspBI	CTAG	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	3 cut(s)	170, 222, 267
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	6, 30
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	218, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	170, 222, 267
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	23, 116
LpnPI	CCDG	7 cut(s)	3, 32, 59, 93, 160, 237, 267
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	13, 172
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MluCI	AATT	2 cut(s)	234, 275
MnlI	CCTC	3 cut(s)	14, 73, 187
MseI	TTAA	2 cut(s)	59, 126
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	170, 222, 267
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	222
PagI	TCATGA	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	6, 30
PshBI	ATTAAT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	59, 126
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	7 cut(s)	28, 48, 84, 159, 198, 229, 304
SexAI	ACCWGGT	1 cut(s)	45
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	234, 275
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	114
TasI	AATT	2 cut(s)	234, 275
TfiI	GAWTC	2 cut(s)	6, 30
Tru1I	TTAA	2 cut(s)	59, 126
Tru9I	TTAA	2 cut(s)	59, 126
TscAI	CASTG	2 cut(s)	112, 181
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	22, 84
TspRI	CASTG	2 cut(s)	112, 181
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.