Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Forward (+)

55165930 .. 55167677

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATTGTCCATCGCGTTCTAGCCGATCTGTTCAAACCTTTCTTGAAGTCAAATAACGCGAAAATCCGAACTCTCTCTTCTTTCTTTTGTCTTCCTCTCCTTCTCGAAGTCGACCAGATCTACCATCTCGCCTGCCTGGCCTCCCCGGTCCATTATAAGTTCAATCCTGTCGAGGTTTCAGATCGTCAGGATCACTATGTCCAGCTCATCCTTCAGCAGTGGCGTCAGCGCGACCTTGCTGCACTCCTCCATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

85

Amino Acids

9.94

Weight (kDa)

8.71

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	3 cut(s)	15, 59, 231
AclWI	GGATC	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	34, 46, 163
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	18, 132
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	137, 146
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	137, 146
BpiI	GAAGAC	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	144, 250
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	144, 250
BseGI	GGATG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	3 cut(s)	15, 59, 231
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	25, 117, 181, 190
Bsp19I	CCATGG	1 cut(s)	250
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	3 cut(s)	15, 59, 231
BspPI	GGATC	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	144, 250
BssMI	GATC	4 cut(s)	25, 117, 181, 190
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	3 cut(s)	15, 59, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	28, 120, 184, 193
BstMBI	GATC	4 cut(s)	25, 117, 181, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 144
BstUI	CGCG	3 cut(s)	15, 59, 231
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	4 cut(s)	23, 140, 205, 255
CviKI_1	RGCY	4 cut(s)	23, 140, 205, 255
DpnI	GATC	4 cut(s)	27, 119, 183, 192
DpnII	GATC	4 cut(s)	25, 117, 181, 190
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	254
FaiI	YATR	3 cut(s)	156, 198, 252
FatI	CATG	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	68, 181
Hpy188III	TCNNGA	3 cut(s)	43, 104, 188
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	110, 221
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	25, 117, 181, 190
LpnPI	CCDG	8 cut(s)	122, 128, 145, 149, 159, 173, 180, 215
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	20
MalI	GATC	4 cut(s)	27, 119, 183, 192
MboI	GATC	4 cut(s)	25, 117, 181, 190
MboII	GAAGA	2 cut(s)	69, 83
MflI	RGATCY	1 cut(s)	117
MnlI	CCTC	4 cut(s)	105, 151, 166, 257
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	137, 146
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	3 cut(s)	15, 59, 231
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	25, 117, 181, 190
NlaIII	CATG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	25, 117, 181, 190
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	137, 146
SetI	ASST	4 cut(s)	40, 177, 207, 237
SinI	GGWCC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	135, 144
StyI	CCWWGG	1 cut(s)	250
TaqI	TCGA	3 cut(s)	105, 111, 171
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.