Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Forward (+)

19791442 .. 19794338

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG210700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGATATTTGCTTTTCTGGGCTTTGCGCACTAACACAAATAGCTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGTTCTCACCTGGTTGACAGATTAATGGAAAATGAAAAGAATGAGGTTATTGTTGTTGATAACTACTTCACTGGCTCCAAGGACAATCTTAAAAAATGGATTGGTCATCCCAGATTTGAGCTTATTCGTCATGATGTCACTGAAACATTGTTGGTTGAGGTTGATCGGATATACCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATATAATCCTGTAAAGACAATAAAAACAAATGTGAGGGCAAGCGTGTTGCTGAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

118

Amino Acids

13.55

Weight (kDa)

9.37

Isoelectric Point (pI)

19.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	20 - 114	7.3e-13	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	21 - 113	1.1e-12	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	21 - 109	1.1e-06	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	45, 77, 208, 278
AluI	AGCT	4 cut(s)	45, 77, 208, 278
Alw26I	GTCTC	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	86
BccI	CCATC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	73, 163
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	73, 163
BseRI	GAGGAG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	73, 163
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	271, 337
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	156, 225
Cac8I	GCNNGC	2 cut(s)	271, 337
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	96
CviAII	CATG	3 cut(s)	52, 218, 270
CviJI	RGCY	6 cut(s)	23, 45, 77, 162, 208, 278
CviKI_1	RGCY	6 cut(s)	23, 45, 77, 162, 208, 278
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	55, 221, 273
FaiI	YATR	5 cut(s)	53, 219, 259, 271, 300
FatI	CATG	3 cut(s)	51, 217, 269
FokI	GGATG	1 cut(s)	180
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	55, 221, 273
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	57, 81
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	55, 221, 273
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	3 cut(s)	50, 74, 167
LpnPI	CCDG	9 cut(s)	4, 54, 63, 83, 110, 144, 211, 288, 318
MabI	ACCWGGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	64, 223
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MluCI	AATT	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	65, 124, 238, 324
MseI	TTAA	2 cut(s)	110, 177
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	55, 221, 273
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	29
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PagI	TCATGA	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	57, 81
PshBI	ATTAAT	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	110, 177
Sau3AI	GATC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	8 cut(s)	47, 79, 99, 135, 210, 249, 280, 355
SexAI	ACCWGGT	1 cut(s)	96
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	165
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	57, 81
Tru1I	TTAA	2 cut(s)	110, 177
Tru9I	TTAA	2 cut(s)	110, 177
TscAI	CASTG	2 cut(s)	163, 232
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	73, 135
TspRI	CASTG	2 cut(s)	163, 232
VspI	ATTAAT	1 cut(s)	110
XceI	RCATGY	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.