Prupe.6G087300_v2.0.a1

transcription complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
5902839 .. 5908671
5833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G087300.1

Sequence Viewer

Length: 1878 bp
ATGTCGGGGTTACTTAATTCTTCTCTAAACGGATCAGGCTCAAATCTTCCAGACAGTAGTGGGCGATTTGCCACATCTTTCTCTGGTCAGTCTGGTGCCGCTTCTCCTGTTTTTCATCACACAGGAACTATTCAGGGGATTCATACATTCATGGAAGCTTCAATGTCCCAACATGCAGGTACATTAACATCAAGAAACTCCAACTTATCTCATGGAAGCTCCCATGGACATTCGGGAGTCACTAATAGAGGGGGTATAAGTGTAGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAATTGGCGGTTCTATTCCTGGGATTCTCCCTACATCTGCTGCAATTGGTAACCGGAATGCTGTTCCAGGATTGGGTGTCTCCCCAATTTTGGGAAATGCAGGTCCTCGGATTACGAGTTCTATGGGAAACATGGTTGGTGGGGGCAACATTGGGAGGAGTATCAGCTCTGGTGGAGGCTTGTCAGTGCCTGGTCTCGCTTCTCGTCTAAATTTAAGTGCAAATAGTGGATCTGGAAGTTTAACCGTCCAAGGGCAGAATCGCTTGATGAGTAGTGTGCTACCACAAGGGTCTCCACAGGTAATTTCGATGCTAGGAAATTCCTATCCTAATGCTGGAGGTCCACTTTCTCAAAGCCACGTACAAGTGAATAATTTGAGCTCTATGGGAATGTTGAATGATGTGAATTCTAATGACAGTTCTCCTTTTGACATCAATGATTTCCCTCAATTAACAAGTCGTCCTAGTTCTGCAGGAGGGCCTCAAGGGCAATTGGGTCTTGGTGTTAGTCCTATTGTTCAACAGAATCAAGAGTTCAGCATCCAAAATGAAGATTTTCCGGCTTTGCCGGGATTTAAAGGTGGTAATGCTGAATATGGGATGGATATTCACCAGAAAGAGCAACTTCATGACAATACTGTGTCGATGATGCAATCTCAGCACTTCTCAATGGGAAGGTCCACTGGATTTAACTTGGGGGGGACTTATTCTTCTCATCGTCCCCAACAGCAACAACAACATGCTCCATCAGTCAGCAGTAGTGGTGTCTCCTTTTCGCAAGTAAACAATCAGGATCTTCTCCATTTGCATGGTTCAGACATATTCCCATCATCACATTCAACGTATCACTCACAGACTAGTGGACCTCCTGGAATTGGATTAAGACCTCTAAATTCTGCAAATACAGTTTCTGGTATGGGTTCGTATGACCAGCTTATCCAGCAGTATCAACAACACCAAAATCAATCCCAGTTTCGCCTGCAGCAGATGTCAGCTGTCAATCAATCATTTAGAGATCAGGGAATGAAATCAATGCAGACATCGCAATCGGCTCCAGACCCATTTGGTTTGCTTGGGTTGTTAAGTGTGATAAGGATGAGTGATCCTGATCTAACATCCCTTGCACTTGGGATTGATTTGACTACGCTTGGGTTAAACTTGAATTCAACAGAAAATCTGCACAAGACTTTTGGTTCTCCATGGTCTGACGAGCCAGCTAAGGGTGATCCAGAGTTTAGTGTTCCACAATGTTATTATGCTAAACAACCGCCTGCACTACATCAAGGGTATTTTTCAAAGTTTTCCGTGGAAACGTTGTTTTATATCTTTTACAGCATGCCCAAAGATGAAGCGCAACTATATGCTGCCAATGAACTCAATAATAGAGGCTGGTTTTATCACAAGGAGCATCGTCTATGGTTCATAAGGGTACCCAACATGGAGCCACTCGTCAAGACAAACACGTATGAGAGAGGATCTTATCACTGCTTTGATCCTAACACATTTGAAACGATCCGAAAGGATAATTTTGTCTTGCAGTACGAGGCATTGGAGAAGAGACCAGTCTTACCGCAGCATTGA

Protein Analysis

626

Amino Acids

66.8

Weight (kDa)

6.55

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 167, 389
Acc65I GGTACC 1 cut(s) 1726
AccB1I GGYRCC 2 cut(s) 95, 1726
AciI CCGC 4 cut(s) 99, 306, 1565, 1868
AclI AACGTT 1 cut(s) 1610
AclWI GGATC 8 cut(s) 40, 535, 1098, 1394, 1517, 1780, 1784, 1804
AcsI RAATTY 5 cut(s) 508, 616, 703, 1189, 1459
AfaI GTAC 4 cut(s) 181, 660, 1728, 1838
AfiI CCNNNNNNNGG 7 cut(s) 371, 388, 389, 549, 632, 1172, 1517
AflIII ACRYGT 1 cut(s) 1758
AgsI TTSAA 8 cut(s) 162, 694, 818, 1137, 1459, 1464, 1593, 1805
AhlI ACTAGT 1 cut(s) 1154
AjnI CCWGG 5 cut(s) 274, 316, 364, 487, 1165
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 7 cut(s) 158, 219, 465, 678, 1231, 1292, 1514
AluI AGCT 7 cut(s) 158, 219, 465, 678, 1231, 1292, 1514
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 5 cut(s) 382, 497, 594, 1069, 1849
AlwI GGATC 8 cut(s) 40, 535, 1098, 1394, 1517, 1780, 1784, 1804
AlwNI CAGNNNCTG 2 cut(s) 488, 1208
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 4 cut(s) 338, 1279, 1661, 1870
ApoI RAATTY 5 cut(s) 508, 616, 703, 1189, 1459
Asp700I GAANNNNTTC 1 cut(s) 852
Asp718I GGTACC 1 cut(s) 1726
AspLEI GCGC 1 cut(s) 1651
AspS9I GGNCC 5 cut(s) 401, 638, 776, 975, 1160
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 2 cut(s) 899, 1532
AvaII GGWCC 4 cut(s) 401, 638, 975, 1160
BanI GGYRCC 2 cut(s) 95, 1726
BanII GRGCYC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 325, 1291, 1648
BccI CCATC 3 cut(s) 892, 1051, 1132
BciT130I CCWGG 5 cut(s) 276, 318, 366, 489, 1167
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 5 cut(s) 382, 497, 594, 1069, 1849
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 3 cut(s) 611, 762, 1155
BfmI CTRYAG 2 cut(s) 768, 1277
BfuAI ACCTGC 2 cut(s) 167, 389
BglI GCCNNNNNGGC 1 cut(s) 784
BisI GCNGC 5 cut(s) 99, 339, 1280, 1662, 1871
BlsI GCNGC 5 cut(s) 100, 340, 1281, 1663, 1872
Bme1390I CCNGG 6 cut(s) 276, 318, 366, 489, 867, 1167
Bme18I GGWCC 4 cut(s) 401, 638, 975, 1160
BmgT120I GGNCC 5 cut(s) 401, 638, 776, 975, 1160
BmiI GGNNCC 4 cut(s) 97, 1350, 1728, 1740
BmrFI CCNGG 6 cut(s) 276, 318, 366, 489, 867, 1167
BmrI ACTGGG 1 cut(s) 1261
BmsI GCATC 4 cut(s) 597, 846, 936, 1714
BmuI ACTGGG 1 cut(s) 1261
BpmI CTGGAG 2 cut(s) 654, 1335
Bpu10I CCTNAGC 1 cut(s) 1515
BpuEI CTTGAG 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 867
BsaAI YACGTR 2 cut(s) 658, 1761
BsaBI GATNNNNATC 1 cut(s) 1404
BsaI GGTCTC 3 cut(s) 497, 594, 1849
BsaJI CCNNGG 7 cut(s) 223, 274, 317, 404, 547, 1496, 1602
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 7 cut(s) 371, 388, 389, 549, 632, 1172, 1517
Bse1I ACTGG 3 cut(s) 985, 1267, 1859
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 5 cut(s) 276, 318, 366, 489, 1167
BseDI CCNNGG 7 cut(s) 223, 274, 317, 404, 547, 1496, 1602
BseGI GGATG 4 cut(s) 837, 903, 1398, 1412
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 7 cut(s) 371, 388, 389, 549, 632, 1172, 1517
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 3 cut(s) 985, 1267, 1859
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 3 cut(s) 325, 1291, 1648
BsgI GTGCAG 2 cut(s) 1460, 1554
BshFI GGCC 1 cut(s) 778
BshNI GGYRCC 2 cut(s) 95, 1726
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 3 cut(s) 352, 857, 866
BslFI GGGAC 3 cut(s) 151, 1002, 1012
BslI CCNNNNNNNGG 7 cut(s) 371, 388, 389, 549, 632, 1172, 1517
BsmAI GTCTC 5 cut(s) 382, 497, 594, 1069, 1849
BsmFI GGGAC 3 cut(s) 151, 1002, 1012
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 1 cut(s) 778
Bso31I GGTCTC 3 cut(s) 497, 594, 1849
Bsp1286I GDGCHC 1 cut(s) 680
Bsp19I CCATGG 2 cut(s) 223, 1496
BspACI CCGC 4 cut(s) 99, 306, 1565, 1868
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 1 cut(s) 967
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 4 cut(s) 97, 1350, 1728, 1740
BspMAI CTGCAG 2 cut(s) 772, 1281
BspMI ACCTGC 2 cut(s) 167, 389
BspPI GGATC 8 cut(s) 40, 535, 1098, 1394, 1517, 1780, 1784, 1804
BspT107I GGYRCC 2 cut(s) 95, 1726
BspTNI GGTCTC 3 cut(s) 497, 594, 1849
BsrI ACTGG 3 cut(s) 985, 1267, 1859
BssECI CCNNGG 7 cut(s) 223, 274, 317, 404, 547, 1496, 1602
BssT1I CCWWGG 3 cut(s) 223, 547, 1496
Bst2UI CCWGG 5 cut(s) 276, 318, 366, 489, 1167
Bst4CI ACNGT 5 cut(s) 56, 544, 716, 937, 1204
Bst6I CTCTTC 1 cut(s) 1847
BstBAI YACGTR 2 cut(s) 658, 1761
BstC8I GCNNGC 4 cut(s) 1277, 1512, 1569, 1634
BstDEI CTNAG 2 cut(s) 954, 1515
BstDSI CCRYGG 3 cut(s) 223, 1496, 1602
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 4 cut(s) 837, 903, 1398, 1412
BstHHI GCGC 1 cut(s) 1651
BstMAI GTCTC 5 cut(s) 382, 497, 594, 1069, 1849
BstMWI GCNNNNNNNGC 4 cut(s) 784, 955, 1237, 1339
BstNI CCWGG 5 cut(s) 276, 318, 366, 489, 1167
BstNSI RCATGY 3 cut(s) 176, 1040, 1636
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 6 cut(s) 274, 316, 364, 487, 865, 1165
BstSFI CTRYAG 2 cut(s) 768, 1277
BstV1I GCAGC 3 cut(s) 325, 1291, 1648
BstX2I RGATCY 3 cut(s) 527, 1090, 1772
BstXI CCANNNNNNTGG 1 cut(s) 1106
BstYI RGATCY 3 cut(s) 527, 1090, 1772
BsuRI GGCC 1 cut(s) 778
BtgI CCRYGG 3 cut(s) 223, 1496, 1602
BtgZI GCGATG 1 cut(s) 1323
BtsCI GGATG 4 cut(s) 837, 903, 1398, 1412
BtsI GCAGTG 1 cut(s) 1780
BtsIMutI CAGTG 3 cut(s) 489, 978, 1780
BveI ACCTGC 2 cut(s) 167, 389
Cac8I GCNNGC 4 cut(s) 1277, 1512, 1569, 1634
CaiI CAGNNNCTG 2 cut(s) 488, 1208
CciI TCATGA 1 cut(s) 925
CfoI GCGC 1 cut(s) 1651
Cfr13I GGNCC 5 cut(s) 401, 638, 776, 975, 1160
Csp6I GTAC 4 cut(s) 180, 659, 1727, 1837
CviQI GTAC 4 cut(s) 180, 659, 1727, 1837
DdeI CTNAG 2 cut(s) 954, 1515
DraI TTTAAA 1 cut(s) 874
Eam1104I CTCTTC 1 cut(s) 1847
EarI CTCTTC 1 cut(s) 1847
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 3 cut(s) 223, 547, 1496
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 3 cut(s) 497, 594, 1849
Eco47I GGWCC 4 cut(s) 401, 638, 975, 1160
Eco53kI GAGCTC 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 678
EcoO109I RGGNCCY 2 cut(s) 401, 776
EcoO65I GGTNACC 1 cut(s) 347
EcoRI GAATTC 2 cut(s) 703, 1459
EcoRII CCWGG 5 cut(s) 274, 316, 364, 487, 1165
EcoT14I CCWWGG 3 cut(s) 223, 547, 1496
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 3 cut(s) 223, 547, 1496
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 3 cut(s) 151, 1002, 1012
Fnu4HI GCNGC 5 cut(s) 99, 339, 1280, 1662, 1871
FokI GGATG 4 cut(s) 824, 910, 1399, 1405
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 5 cut(s) 99, 339, 1280, 1662, 1871
FspBI CTAG 3 cut(s) 611, 762, 1155
GlaI GCGC 1 cut(s) 1650
GluI GCNGC 5 cut(s) 99, 339, 1280, 1662, 1871
GsuI CTGGAG 2 cut(s) 654, 1335
HaeIII GGCC 1 cut(s) 778
HapII CCGG 3 cut(s) 352, 857, 866
HhaI GCGC 1 cut(s) 1651
Hin6I GCGC 1 cut(s) 1649
HinP1I GCGC 1 cut(s) 1649
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 5 cut(s) 139, 237, 322, 556, 823
HpaII CCGG 3 cut(s) 352, 857, 866
HphI GGTGA 2 cut(s) 899, 1532
Hpy166II GTNNAC 4 cut(s) 641, 978, 1081, 1160
Hpy188I TCNGA 4 cut(s) 408, 1114, 1504, 1814
Hpy8I GTNNAC 4 cut(s) 641, 978, 1081, 1160
HpyAV CCTTC 1 cut(s) 966
HpyCH4III ACNGT 5 cut(s) 56, 544, 716, 937, 1204
HpyCH4IV ACGT 4 cut(s) 657, 1139, 1610, 1760
HpyF10VI GCNNNNNNNGC 4 cut(s) 784, 955, 1237, 1339
HpyF3I CTNAG 2 cut(s) 954, 1515
HpySE526I ACGT 4 cut(s) 657, 1139, 1610, 1760
HspAI GCGC 1 cut(s) 1649
KpnI GGTACC 1 cut(s) 1730
LmnI GCTCC 5 cut(s) 224, 1045, 1354, 1702, 1738
Lsp1109I GCAGC 3 cut(s) 325, 1291, 1648
LweI GCATC 4 cut(s) 597, 846, 936, 1714
MaeI CTAG 3 cut(s) 611, 762, 1155
MaeII ACGT 4 cut(s) 657, 1139, 1610, 1760
MaeIII GTNAC 3 cut(s) 9, 238, 347
MboII GAAGA 6 cut(s) 12, 38, 860, 999, 1085, 1864
MfeI CAATTG 2 cut(s) 342, 788
MflI RGATCY 3 cut(s) 527, 1090, 1772
MhlI GDGCHC 1 cut(s) 680
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 852
MslI CAYNNNNRTG 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 1292
MspI CCGG 3 cut(s) 352, 857, 866
MspR9I CCNGG 6 cut(s) 276, 318, 366, 489, 867, 1167
MunI CAATTG 2 cut(s) 342, 788
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 5 cut(s) 276, 318, 366, 489, 1167
MwoI GCNNNNNNNGC 4 cut(s) 784, 955, 1237, 1339
NciI CCSGG 1 cut(s) 867
NcoI CCATGG 2 cut(s) 223, 1496
NlaIV GGNNCC 4 cut(s) 97, 1350, 1728, 1740
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 3 cut(s) 176, 1040, 1636
PaeI GCATGC 1 cut(s) 1636
PagI TCATGA 1 cut(s) 925
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 4 cut(s) 139, 322, 556, 823
PfoI TCCNGGA 2 cut(s) 364, 1165
PkrI GCNGC 5 cut(s) 100, 340, 1281, 1663, 1872
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Ppu21I YACGTR 2 cut(s) 658, 1761
PpuMI RGGWCCY 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 1610
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 5 cut(s) 274, 316, 364, 487, 1165
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 5 cut(s) 274, 316, 364, 487, 1165
PspN4I GGNNCC 4 cut(s) 97, 1350, 1728, 1740
PspPI GGNCC 5 cut(s) 401, 638, 776, 975, 1160
PspPPI RGGWCCY 1 cut(s) 401
PstI CTGCAG 2 cut(s) 772, 1281
PstNI CAGNNNCTG 2 cut(s) 488, 1208
PsuI RGATCY 3 cut(s) 527, 1090, 1772
PvuII CAGCTG 1 cut(s) 1292
RsaI GTAC 4 cut(s) 181, 660, 1728, 1838
RsaNI GTAC 4 cut(s) 180, 659, 1727, 1837
RseI CAYNNNNRTG 1 cut(s) 1104
SacI GAGCTC 1 cut(s) 680
SatI GCNGC 5 cut(s) 99, 339, 1280, 1662, 1871
Sau96I GGNCC 5 cut(s) 401, 638, 776, 975, 1160
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 6 cut(s) 276, 318, 366, 489, 867, 1167
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 4 cut(s) 597, 846, 936, 1714
SfcI CTRYAG 2 cut(s) 768, 1277
SinI GGWCC 4 cut(s) 401, 638, 975, 1160
SmiMI CAYNNNNRTG 1 cut(s) 1104
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
SpeI ACTAGT 1 cut(s) 1154
SphI GCATGC 1 cut(s) 1636
SsiI CCGC 4 cut(s) 99, 306, 1565, 1868
SspMI CTAG 3 cut(s) 611, 762, 1155
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 6 cut(s) 274, 316, 364, 487, 865, 1165
StyI CCWWGG 3 cut(s) 223, 547, 1496
TaaI ACNGT 5 cut(s) 56, 544, 716, 937, 1204
TaiI ACGT 4 cut(s) 660, 1142, 1613, 1763
TaqI TCGA 2 cut(s) 605, 941
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 4 cut(s) 139, 322, 556, 823
TscAI CASTG 3 cut(s) 489, 985, 1787
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 4 cut(s) 338, 1279, 1661, 1870
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 9 cut(s) 104, 131, 139, 861, 914, 1337, 1659, 1683, 1708
TspGWI ACGGA 2 cut(s) 45, 1591
TspRI CASTG 3 cut(s) 489, 985, 1787
VpaK11BI GGWCC 4 cut(s) 401, 638, 975, 1160
XapI RAATTY 5 cut(s) 508, 616, 703, 1189, 1459
XceI RCATGY 3 cut(s) 176, 1040, 1636
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 3 cut(s) 611, 762, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.