transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07705 AT1G07705 |
| fragaria_vesca | FvH4_3g34620 FvH4_3g34620 FvH4_3g34620 |
| malus_domestica | MD03G1103300.v1.1 MD11G1117100.v1.1 |
| prunus_persica | Prupe.6G087300_v2.0.a1 |
| pyrus_communis | pycom03g08390 pycom11g09830 |
| rosa_chinensis | RchiOBHm_Chr5g0062331 |
| rosa_laevigata | RLG00000035550 |
| rosa_multiflora | Rmu_sc0006295.1_g000002 Rmu_ssc0000409.1_g000034 |
| rosa_roxburghii | Rroxscaffold_1G00018350 |
| rosa_rugosa | Rorug05G0348500 Rorug05G0348600 Rorug05G0348700 |
| rosa_samantha | Rh5AG408400 Rh5BG422100 Rh5CG446100 Rh5DG437100 |
| rosa_wichuraiana | Rw5G038480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 167, 389 |
| Acc65I | GGTACC | 1 cut(s) | 1726 |
| AccB1I | GGYRCC | 2 cut(s) | 95, 1726 |
| AciI | CCGC | 4 cut(s) | 99, 306, 1565, 1868 |
| AclI | AACGTT | 1 cut(s) | 1610 |
| AclWI | GGATC | 8 cut(s) | 40, 535, 1098, 1394, 1517, 1780, 1784, 1804 |
| AcsI | RAATTY | 5 cut(s) | 508, 616, 703, 1189, 1459 |
| AfaI | GTAC | 4 cut(s) | 181, 660, 1728, 1838 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 371, 388, 389, 549, 632, 1172, 1517 |
| AflIII | ACRYGT | 1 cut(s) | 1758 |
| AgsI | TTSAA | 8 cut(s) | 162, 694, 818, 1137, 1459, 1464, 1593, 1805 |
| AhlI | ACTAGT | 1 cut(s) | 1154 |
| AjnI | CCWGG | 5 cut(s) | 274, 316, 364, 487, 1165 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 400, 432 |
| AluBI | AGCT | 7 cut(s) | 158, 219, 465, 678, 1231, 1292, 1514 |
| AluI | AGCT | 7 cut(s) | 158, 219, 465, 678, 1231, 1292, 1514 |
| Alw21I | GWGCWC | 1 cut(s) | 680 |
| Alw26I | GTCTC | 5 cut(s) | 382, 497, 594, 1069, 1849 |
| AlwI | GGATC | 8 cut(s) | 40, 535, 1098, 1394, 1517, 1780, 1784, 1804 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 488, 1208 |
| AoxI | GGCC | 1 cut(s) | 776 |
| ApeKI | GCWGC | 4 cut(s) | 338, 1279, 1661, 1870 |
| ApoI | RAATTY | 5 cut(s) | 508, 616, 703, 1189, 1459 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 852 |
| Asp718I | GGTACC | 1 cut(s) | 1726 |
| AspLEI | GCGC | 1 cut(s) | 1651 |
| AspS9I | GGNCC | 5 cut(s) | 401, 638, 776, 975, 1160 |
| AsuC2I | CCSGG | 1 cut(s) | 867 |
| AsuHPI | GGTGA | 2 cut(s) | 899, 1532 |
| AvaII | GGWCC | 4 cut(s) | 401, 638, 975, 1160 |
| BanI | GGYRCC | 2 cut(s) | 95, 1726 |
| BanII | GRGCYC | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 1 cut(s) | 680 |
| BbvI | GCAGC | 3 cut(s) | 325, 1291, 1648 |
| BccI | CCATC | 3 cut(s) | 892, 1051, 1132 |
| BciT130I | CCWGG | 5 cut(s) | 276, 318, 366, 489, 1167 |
| BcnI | CCSGG | 1 cut(s) | 867 |
| BcoDI | GTCTC | 5 cut(s) | 382, 497, 594, 1069, 1849 |
| BcuI | ACTAGT | 1 cut(s) | 1154 |
| BfaI | CTAG | 3 cut(s) | 611, 762, 1155 |
| BfmI | CTRYAG | 2 cut(s) | 768, 1277 |
| BfuAI | ACCTGC | 2 cut(s) | 167, 389 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 784 |
| BisI | GCNGC | 5 cut(s) | 99, 339, 1280, 1662, 1871 |
| BlsI | GCNGC | 5 cut(s) | 100, 340, 1281, 1663, 1872 |
| Bme1390I | CCNGG | 6 cut(s) | 276, 318, 366, 489, 867, 1167 |
| Bme18I | GGWCC | 4 cut(s) | 401, 638, 975, 1160 |
| BmgT120I | GGNCC | 5 cut(s) | 401, 638, 776, 975, 1160 |
| BmiI | GGNNCC | 4 cut(s) | 97, 1350, 1728, 1740 |
| BmrFI | CCNGG | 6 cut(s) | 276, 318, 366, 489, 867, 1167 |
| BmrI | ACTGGG | 1 cut(s) | 1261 |
| BmsI | GCATC | 4 cut(s) | 597, 846, 936, 1714 |
| BmuI | ACTGGG | 1 cut(s) | 1261 |
| BpmI | CTGGAG | 2 cut(s) | 654, 1335 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1515 |
| BpuEI | CTTGAG | 1 cut(s) | 765 |
| BpuMI | CCSGG | 1 cut(s) | 867 |
| BsaAI | YACGTR | 2 cut(s) | 658, 1761 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1404 |
| BsaI | GGTCTC | 3 cut(s) | 497, 594, 1849 |
| BsaJI | CCNNGG | 7 cut(s) | 223, 274, 317, 404, 547, 1496, 1602 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 371, 388, 389, 549, 632, 1172, 1517 |
| Bse1I | ACTGG | 3 cut(s) | 985, 1267, 1859 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1404 |
| BseBI | CCWGG | 5 cut(s) | 276, 318, 366, 489, 1167 |
| BseDI | CCNNGG | 7 cut(s) | 223, 274, 317, 404, 547, 1496, 1602 |
| BseGI | GGATG | 4 cut(s) | 837, 903, 1398, 1412 |
| BseJI | GATNNNNATC | 1 cut(s) | 1404 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 371, 388, 389, 549, 632, 1172, 1517 |
| BseMII | CTCAG | 1 cut(s) | 968 |
| BseNI | ACTGG | 3 cut(s) | 985, 1267, 1859 |
| BseRI | GAGGAG | 1 cut(s) | 469 |
| BseXI | GCAGC | 3 cut(s) | 325, 1291, 1648 |
| BsgI | GTGCAG | 2 cut(s) | 1460, 1554 |
| BshFI | GGCC | 1 cut(s) | 778 |
| BshNI | GGYRCC | 2 cut(s) | 95, 1726 |
| BsiHKAI | GWGCWC | 1 cut(s) | 680 |
| BsiSI | CCGG | 3 cut(s) | 352, 857, 866 |
| BslFI | GGGAC | 3 cut(s) | 151, 1002, 1012 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 371, 388, 389, 549, 632, 1172, 1517 |
| BsmAI | GTCTC | 5 cut(s) | 382, 497, 594, 1069, 1849 |
| BsmFI | GGGAC | 3 cut(s) | 151, 1002, 1012 |
| BsmI | GAATGC | 1 cut(s) | 361 |
| BsnI | GGCC | 1 cut(s) | 778 |
| Bso31I | GGTCTC | 3 cut(s) | 497, 594, 1849 |
| Bsp1286I | GDGCHC | 1 cut(s) | 680 |
| Bsp19I | CCATGG | 2 cut(s) | 223, 1496 |
| BspACI | CCGC | 4 cut(s) | 99, 306, 1565, 1868 |
| BspANI | GGCC | 1 cut(s) | 778 |
| BspCNI | CTCAG | 1 cut(s) | 967 |
| BspHI | TCATGA | 1 cut(s) | 925 |
| BspLI | GGNNCC | 4 cut(s) | 97, 1350, 1728, 1740 |
| BspMAI | CTGCAG | 2 cut(s) | 772, 1281 |
| BspMI | ACCTGC | 2 cut(s) | 167, 389 |
| BspPI | GGATC | 8 cut(s) | 40, 535, 1098, 1394, 1517, 1780, 1784, 1804 |
| BspT107I | GGYRCC | 2 cut(s) | 95, 1726 |
| BspTNI | GGTCTC | 3 cut(s) | 497, 594, 1849 |
| BsrI | ACTGG | 3 cut(s) | 985, 1267, 1859 |
| BssECI | CCNNGG | 7 cut(s) | 223, 274, 317, 404, 547, 1496, 1602 |
| BssT1I | CCWWGG | 3 cut(s) | 223, 547, 1496 |
| Bst2UI | CCWGG | 5 cut(s) | 276, 318, 366, 489, 1167 |
| Bst4CI | ACNGT | 5 cut(s) | 56, 544, 716, 937, 1204 |
| Bst6I | CTCTTC | 1 cut(s) | 1847 |
| BstBAI | YACGTR | 2 cut(s) | 658, 1761 |
| BstC8I | GCNNGC | 4 cut(s) | 1277, 1512, 1569, 1634 |
| BstDEI | CTNAG | 2 cut(s) | 954, 1515 |
| BstDSI | CCRYGG | 3 cut(s) | 223, 1496, 1602 |
| BstEII | GGTNACC | 1 cut(s) | 347 |
| BstF5I | GGATG | 4 cut(s) | 837, 903, 1398, 1412 |
| BstHHI | GCGC | 1 cut(s) | 1651 |
| BstMAI | GTCTC | 5 cut(s) | 382, 497, 594, 1069, 1849 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 784, 955, 1237, 1339 |
| BstNI | CCWGG | 5 cut(s) | 276, 318, 366, 489, 1167 |
| BstNSI | RCATGY | 3 cut(s) | 176, 1040, 1636 |
| BstPI | GGTNACC | 1 cut(s) | 347 |
| BstSCI | CCNGG | 6 cut(s) | 274, 316, 364, 487, 865, 1165 |
| BstSFI | CTRYAG | 2 cut(s) | 768, 1277 |
| BstV1I | GCAGC | 3 cut(s) | 325, 1291, 1648 |
| BstX2I | RGATCY | 3 cut(s) | 527, 1090, 1772 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1106 |
| BstYI | RGATCY | 3 cut(s) | 527, 1090, 1772 |
| BsuRI | GGCC | 1 cut(s) | 778 |
| BtgI | CCRYGG | 3 cut(s) | 223, 1496, 1602 |
| BtgZI | GCGATG | 1 cut(s) | 1323 |
| BtsCI | GGATG | 4 cut(s) | 837, 903, 1398, 1412 |
| BtsI | GCAGTG | 1 cut(s) | 1780 |
| BtsIMutI | CAGTG | 3 cut(s) | 489, 978, 1780 |
| BveI | ACCTGC | 2 cut(s) | 167, 389 |
| Cac8I | GCNNGC | 4 cut(s) | 1277, 1512, 1569, 1634 |
| CaiI | CAGNNNCTG | 2 cut(s) | 488, 1208 |
| CciI | TCATGA | 1 cut(s) | 925 |
| CfoI | GCGC | 1 cut(s) | 1651 |
| Cfr13I | GGNCC | 5 cut(s) | 401, 638, 776, 975, 1160 |
| Csp6I | GTAC | 4 cut(s) | 180, 659, 1727, 1837 |
| CviQI | GTAC | 4 cut(s) | 180, 659, 1727, 1837 |
| DdeI | CTNAG | 2 cut(s) | 954, 1515 |
| DraI | TTTAAA | 1 cut(s) | 874 |
| Eam1104I | CTCTTC | 1 cut(s) | 1847 |
| EarI | CTCTTC | 1 cut(s) | 1847 |
| Ecl136II | GAGCTC | 1 cut(s) | 678 |
| Eco130I | CCWWGG | 3 cut(s) | 223, 547, 1496 |
| Eco24I | GRGCYC | 1 cut(s) | 680 |
| Eco31I | GGTCTC | 3 cut(s) | 497, 594, 1849 |
| Eco47I | GGWCC | 4 cut(s) | 401, 638, 975, 1160 |
| Eco53kI | GAGCTC | 1 cut(s) | 678 |
| Eco91I | GGTNACC | 1 cut(s) | 347 |
| EcoICRI | GAGCTC | 1 cut(s) | 678 |
| EcoO109I | RGGNCCY | 2 cut(s) | 401, 776 |
| EcoO65I | GGTNACC | 1 cut(s) | 347 |
| EcoRI | GAATTC | 2 cut(s) | 703, 1459 |
| EcoRII | CCWGG | 5 cut(s) | 274, 316, 364, 487, 1165 |
| EcoT14I | CCWWGG | 3 cut(s) | 223, 547, 1496 |
| EcoT38I | GRGCYC | 1 cut(s) | 680 |
| ErhI | CCWWGG | 3 cut(s) | 223, 547, 1496 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 906, 938 |
| FaqI | GGGAC | 3 cut(s) | 151, 1002, 1012 |
| Fnu4HI | GCNGC | 5 cut(s) | 99, 339, 1280, 1662, 1871 |
| FokI | GGATG | 4 cut(s) | 824, 910, 1399, 1405 |
| FriOI | GRGCYC | 1 cut(s) | 680 |
| Fsp4HI | GCNGC | 5 cut(s) | 99, 339, 1280, 1662, 1871 |
| FspBI | CTAG | 3 cut(s) | 611, 762, 1155 |
| GlaI | GCGC | 1 cut(s) | 1650 |
| GluI | GCNGC | 5 cut(s) | 99, 339, 1280, 1662, 1871 |
| GsuI | CTGGAG | 2 cut(s) | 654, 1335 |
| HaeIII | GGCC | 1 cut(s) | 778 |
| HapII | CCGG | 3 cut(s) | 352, 857, 866 |
| HhaI | GCGC | 1 cut(s) | 1651 |
| Hin6I | GCGC | 1 cut(s) | 1649 |
| HinP1I | GCGC | 1 cut(s) | 1649 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 5 cut(s) | 139, 237, 322, 556, 823 |
| HpaII | CCGG | 3 cut(s) | 352, 857, 866 |
| HphI | GGTGA | 2 cut(s) | 899, 1532 |
| Hpy166II | GTNNAC | 4 cut(s) | 641, 978, 1081, 1160 |
| Hpy188I | TCNGA | 4 cut(s) | 408, 1114, 1504, 1814 |
| Hpy8I | GTNNAC | 4 cut(s) | 641, 978, 1081, 1160 |
| HpyAV | CCTTC | 1 cut(s) | 966 |
| HpyCH4III | ACNGT | 5 cut(s) | 56, 544, 716, 937, 1204 |
| HpyCH4IV | ACGT | 4 cut(s) | 657, 1139, 1610, 1760 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 784, 955, 1237, 1339 |
| HpyF3I | CTNAG | 2 cut(s) | 954, 1515 |
| HpySE526I | ACGT | 4 cut(s) | 657, 1139, 1610, 1760 |
| HspAI | GCGC | 1 cut(s) | 1649 |
| KpnI | GGTACC | 1 cut(s) | 1730 |
| LmnI | GCTCC | 5 cut(s) | 224, 1045, 1354, 1702, 1738 |
| Lsp1109I | GCAGC | 3 cut(s) | 325, 1291, 1648 |
| LweI | GCATC | 4 cut(s) | 597, 846, 936, 1714 |
| MaeI | CTAG | 3 cut(s) | 611, 762, 1155 |
| MaeII | ACGT | 4 cut(s) | 657, 1139, 1610, 1760 |
| MaeIII | GTNAC | 3 cut(s) | 9, 238, 347 |
| MboII | GAAGA | 6 cut(s) | 12, 38, 860, 999, 1085, 1864 |
| MfeI | CAATTG | 2 cut(s) | 342, 788 |
| MflI | RGATCY | 3 cut(s) | 527, 1090, 1772 |
| MhlI | GDGCHC | 1 cut(s) | 680 |
| MlyI | GAGTC | 1 cut(s) | 246 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MroXI | GAANNNNTTC | 1 cut(s) | 852 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1104 |
| MspA1I | CMGCKG | 1 cut(s) | 1292 |
| MspI | CCGG | 3 cut(s) | 352, 857, 866 |
| MspR9I | CCNGG | 6 cut(s) | 276, 318, 366, 489, 867, 1167 |
| MunI | CAATTG | 2 cut(s) | 342, 788 |
| Mva1269I | GAATGC | 1 cut(s) | 361 |
| MvaI | CCWGG | 5 cut(s) | 276, 318, 366, 489, 1167 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 784, 955, 1237, 1339 |
| NciI | CCSGG | 1 cut(s) | 867 |
| NcoI | CCATGG | 2 cut(s) | 223, 1496 |
| NlaIV | GGNNCC | 4 cut(s) | 97, 1350, 1728, 1740 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NspI | RCATGY | 3 cut(s) | 176, 1040, 1636 |
| PaeI | GCATGC | 1 cut(s) | 1636 |
| PagI | TCATGA | 1 cut(s) | 925 |
| PctI | GAATGC | 1 cut(s) | 361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 852 |
| PfeI | GAWTC | 4 cut(s) | 139, 322, 556, 823 |
| PfoI | TCCNGGA | 2 cut(s) | 364, 1165 |
| PkrI | GCNGC | 5 cut(s) | 100, 340, 1281, 1663, 1872 |
| PleI | GAGTC | 1 cut(s) | 245 |
| PpsI | GAGTC | 1 cut(s) | 245 |
| Ppu21I | YACGTR | 2 cut(s) | 658, 1761 |
| PpuMI | RGGWCCY | 1 cut(s) | 401 |
| Psp124BI | GAGCTC | 1 cut(s) | 680 |
| Psp1406I | AACGTT | 1 cut(s) | 1610 |
| Psp5II | RGGWCCY | 1 cut(s) | 401 |
| Psp6I | CCWGG | 5 cut(s) | 274, 316, 364, 487, 1165 |
| PspEI | GGTNACC | 1 cut(s) | 347 |
| PspGI | CCWGG | 5 cut(s) | 274, 316, 364, 487, 1165 |
| PspN4I | GGNNCC | 4 cut(s) | 97, 1350, 1728, 1740 |
| PspPI | GGNCC | 5 cut(s) | 401, 638, 776, 975, 1160 |
| PspPPI | RGGWCCY | 1 cut(s) | 401 |
| PstI | CTGCAG | 2 cut(s) | 772, 1281 |
| PstNI | CAGNNNCTG | 2 cut(s) | 488, 1208 |
| PsuI | RGATCY | 3 cut(s) | 527, 1090, 1772 |
| PvuII | CAGCTG | 1 cut(s) | 1292 |
| RsaI | GTAC | 4 cut(s) | 181, 660, 1728, 1838 |
| RsaNI | GTAC | 4 cut(s) | 180, 659, 1727, 1837 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1104 |
| SacI | GAGCTC | 1 cut(s) | 680 |
| SatI | GCNGC | 5 cut(s) | 99, 339, 1280, 1662, 1871 |
| Sau96I | GGNCC | 5 cut(s) | 401, 638, 776, 975, 1160 |
| SchI | GAGTC | 1 cut(s) | 246 |
| ScrFI | CCNGG | 6 cut(s) | 276, 318, 366, 489, 867, 1167 |
| SduI | GDGCHC | 1 cut(s) | 680 |
| SfaNI | GCATC | 4 cut(s) | 597, 846, 936, 1714 |
| SfcI | CTRYAG | 2 cut(s) | 768, 1277 |
| SinI | GGWCC | 4 cut(s) | 401, 638, 975, 1160 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1104 |
| SmlI | CTYRAG | 1 cut(s) | 780 |
| SmoI | CTYRAG | 1 cut(s) | 780 |
| SpeI | ACTAGT | 1 cut(s) | 1154 |
| SphI | GCATGC | 1 cut(s) | 1636 |
| SsiI | CCGC | 4 cut(s) | 99, 306, 1565, 1868 |
| SspMI | CTAG | 3 cut(s) | 611, 762, 1155 |
| SstI | GAGCTC | 1 cut(s) | 680 |
| StyD4I | CCNGG | 6 cut(s) | 274, 316, 364, 487, 865, 1165 |
| StyI | CCWWGG | 3 cut(s) | 223, 547, 1496 |
| TaaI | ACNGT | 5 cut(s) | 56, 544, 716, 937, 1204 |
| TaiI | ACGT | 4 cut(s) | 660, 1142, 1613, 1763 |
| TaqI | TCGA | 2 cut(s) | 605, 941 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 4 cut(s) | 139, 322, 556, 823 |
| TscAI | CASTG | 3 cut(s) | 489, 985, 1787 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| TseI | GCWGC | 4 cut(s) | 338, 1279, 1661, 1870 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 9 cut(s) | 104, 131, 139, 861, 914, 1337, 1659, 1683, 1708 |
| TspGWI | ACGGA | 2 cut(s) | 45, 1591 |
| TspRI | CASTG | 3 cut(s) | 489, 985, 1787 |
| VpaK11BI | GGWCC | 4 cut(s) | 401, 638, 975, 1160 |
| XapI | RAATTY | 5 cut(s) | 508, 616, 703, 1189, 1459 |
| XceI | RCATGY | 3 cut(s) | 176, 1040, 1636 |
| XmnI | GAANNNNTTC | 1 cut(s) | 852 |
| XspI | CTAG | 3 cut(s) | 611, 762, 1155 |