Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008670

Physical Location & Seq

Genomic Coordinates Reverse (-)

43164588 .. 43166352

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAAAATCTTGGAAGTTTAGAAAATCATGCTTCAGCTTGGGGTTTGGCAAATTTCCTCACCATTCAAATGACTCTGAGAGCTGCAGTTGAGCTCAATGTGTTCAACATCATTGCCAAATCAGGTCCCGGAGCTCATCTGACATCAAAAGAAATTGTTTCACAAATTCCCAACACAAATCCAACTTTAGCAGGTGAGAATTTGGAGCGAATTCTCAAACTTTTGAGTGTTCATTCTCTTTTATCCACATTTGTAACACCAAACCCTATTGATAAGAAGAAAGAAACAAGATATGGGCTGACAAAGGAAGCACTTTGCCTAGTCCAGAATGAAGATGGAGTTTCCTTTTCTCCAGTTGTTGCGTTTGGCTCCGAAATGTTCGTTGCACAGAGCTTCTACATGCTCAAGTACAAGGTGCTTGAACCGGAGAGTTCTCCCTTTCTCAAAGCCCATGGAGAGAGTTTTTATGACTACATGTCTAACAAGCCTGAGTTGTGCCAATTGTTTGACAAGGTGATGGGACTAAATTCTTACCTATATTTTGATCATAAGGTGTTTGAGGTTTACAAAGGTTTCGAAGAGGTGAAGGAGCTGATGGATGTAGGAGGTGGTGATGGAACTACGATTGCCAAGATAGTGTCTAGGTATCCTCACATCCATGGAATCAACTTCAATTTGCCAAGTGTTATATCTAAAGCTCCTAAGTTGCCAGGTGTAAAGCATGTAAGTGGAGATATGTTTGAGTTAATACCAGAGACGCAGTCACTCATGTTGATGTTGGTACTCCATAATTGGGATGATGAACACTGTAAGAAGATATTGAGAAACTGTTGGGAGGCAATACCGGATTATGGGAAGGTAATAGTTATTGAGCAATATGTAATGCCGGAACTAGTTGAGAATACCCCAGAAATGAAGCGCATACTCTACTATGACGTAATCATGATGACCTTGTTTCCTGGTGGTAAGGAGCGAACAATAGCTGAATTTGATATCCTTGCCAAATCCGTAGGTTTCGTTGAAACAAAGATCTTCCCGCTTCCTCGTGGCAGTTATGTTATCGAGTTTCTTAAGGGGGGGAGTCGATCATTGGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006355 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015074 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903506 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NOT2_3_5

Protein Analysis

366

Amino Acids

41.2

Weight (kDa)

5.85

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	14 - 109	6.7e-10	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	132 - 339	2.6e-47	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07705 AT1G07705
fragaria_vesca	FvH4_3g34620 FvH4_3g34620 FvH4_3g34620
malus_domestica	MD03G1103300.v1.1 MD11G1117100.v1.1
prunus_persica	Prupe.6G087300_v2.0.a1
pyrus_communis	pycom03g08390 pycom11g09830
rosa_chinensis	RchiOBHm_Chr5g0062331
rosa_laevigata	RLG00000035550
rosa_multiflora	Rmu_sc0006295.1_g000002 Rmu_ssc0000409.1_g000034
rosa_roxburghii	Rroxscaffold_1G00018350
rosa_rugosa	Rorug05G0348500 Rorug05G0348600 Rorug05G0348700
rosa_samantha	Rh5AG408400 Rh5BG422100 Rh5CG446100 Rh5DG437100
rosa_wichuraiana	Rw5G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	1 cut(s)	1037
AcsI	RAATTY	6 cut(s)	52, 165, 199, 210, 526, 986
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	2 cut(s)	410, 783
AfiI	CCNNNNNNNGG	2 cut(s)	793, 851
AflII	CTTAAG	1 cut(s)	1070
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	68, 106, 422, 673, 1022
AhdI	GACNNNNNGTC	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	892
AjnI	CCWGG	2 cut(s)	709, 958
AluBI	AGCT	8 cut(s)	38, 83, 94, 134, 393, 592, 698, 983
AluI	AGCT	8 cut(s)	38, 83, 94, 134, 393, 592, 698, 983
Alw21I	GWGCWC	2 cut(s)	96, 136
Alw26I	GTCTC	1 cut(s)	749
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	6 cut(s)	52, 165, 199, 210, 526, 986
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	5 cut(s)	52, 206, 526, 595, 623
AsuII	TTCGAA	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	96, 136
BauI	CACGAG	1 cut(s)	1044
Bbv12I	GWGCWC	2 cut(s)	96, 136
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	4 cut(s)	329, 511, 589, 608
BciT130I	CCWGG	2 cut(s)	711, 960
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	749
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	3 cut(s)	320, 642, 893
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	1070
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	657
BglII	AGATCT	1 cut(s)	1029
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	3 cut(s)	129, 711, 960
Bme18I	GGWCC	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	127, 370
BmrFI	CCNGG	3 cut(s)	129, 711, 960
BpmI	CTGGAG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	451, 658
BsaWI	WCCGGW	2 cut(s)	424, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	793, 851
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	711, 960
BseDI	CCNNGG	2 cut(s)	451, 658
BseGI	GGATG	3 cut(s)	604, 654, 802
BseLI	CCNNNNNNNGG	2 cut(s)	793, 851
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	68, 480
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	96, 136
BsiSI	CCGG	4 cut(s)	129, 425, 845, 887
BslFI	GGGAC	2 cut(s)	111, 534
BslI	CCNNNNNNNGG	2 cut(s)	793, 851
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	111, 534
Bsp119I	TTCGAA	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	96, 136
Bsp143I	GATC	3 cut(s)	544, 1029, 1085
Bsp19I	CCATGG	2 cut(s)	451, 658
BspACI	CCGC	1 cut(s)	1037
BspCNI	CTCAG	2 cut(s)	69, 481
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	127, 370
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	576
BspTI	CTTAAG	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	451, 658
BssMI	GATC	3 cut(s)	544, 1029, 1085
BssSI	CACGAG	1 cut(s)	1044
BssT1I	CCWWGG	2 cut(s)	451, 658
Bst2BI	CACGAG	1 cut(s)	1044
Bst2UI	CCWGG	2 cut(s)	711, 960
Bst4CI	ACNGT	2 cut(s)	809, 830
Bst6I	CTCTTC	1 cut(s)	573
BstAFI	CTTAAG	1 cut(s)	1070
BstBI	TTCGAA	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	77, 489, 702
BstDSI	CCRYGG	2 cut(s)	451, 658
BstF5I	GGATG	3 cut(s)	604, 654, 802
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	3 cut(s)	547, 1032, 1088
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	3 cut(s)	544, 1029, 1085
BstNI	CCWGG	2 cut(s)	711, 960
BstNSI	RCATGY	3 cut(s)	403, 478, 725
BstSCI	CCNGG	3 cut(s)	127, 709, 958
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	1029
BsuI	GTATCC	1 cut(s)	657
BtgI	CCRYGG	2 cut(s)	451, 658
BtsCI	GGATG	3 cut(s)	604, 654, 802
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	1 cut(s)	182
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	2 cut(s)	409, 782
CviAII	CATG	8 cut(s)	29, 400, 452, 475, 659, 722, 769, 943
CviQI	GTAC	2 cut(s)	409, 782
DdeI	CTNAG	3 cut(s)	77, 489, 702
DpnI	GATC	3 cut(s)	546, 1031, 1087
DpnII	GATC	3 cut(s)	544, 1029, 1085
DriI	GACNNNNNGTC	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	573
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	2 cut(s)	94, 134
Eco130I	CCWWGG	2 cut(s)	451, 658
Eco24I	GRGCYC	2 cut(s)	96, 136
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	2 cut(s)	94, 134
Eco57I	CTGAAG	1 cut(s)	18
EcoICRI	GAGCTC	2 cut(s)	94, 134
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	709, 958
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	2 cut(s)	451, 658
EcoT38I	GRGCYC	2 cut(s)	96, 136
ErhI	CCWWGG	2 cut(s)	451, 658
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	8 cut(s)	32, 403, 455, 478, 662, 725, 772, 946
FaqI	GGGAC	2 cut(s)	111, 534
FatI	CATG	8 cut(s)	28, 399, 451, 474, 658, 721, 768, 942
FauI	CCCGC	1 cut(s)	1044
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	611, 641, 809
FriOI	GRGCYC	2 cut(s)	96, 136
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	3 cut(s)	320, 642, 893
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	336
HapII	CCGG	4 cut(s)	129, 425, 845, 887
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	1 cut(s)	921
Hin1II	CATG	8 cut(s)	32, 403, 455, 478, 662, 725, 772, 946
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	3 cut(s)	73, 663, 1081
HpaII	CCGG	4 cut(s)	129, 425, 845, 887
HphI	GGTGA	5 cut(s)	52, 206, 526, 595, 623
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	78, 141, 373
Hpy188III	TCNNGA	2 cut(s)	325, 943
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	2 cut(s)	580, 850
HpyCH4III	ACNGT	2 cut(s)	809, 830
HpyCH4IV	ACGT	1 cut(s)	936
HpyCH4V	TGCA	2 cut(s)	86, 386
HpyF3I	CTNAG	3 cut(s)	77, 489, 702
HpySE526I	ACGT	1 cut(s)	936
Hsp92II	CATG	8 cut(s)	32, 403, 455, 478, 662, 725, 772, 946
HspAI	GCGC	1 cut(s)	919
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	544, 1029, 1085
LmnI	GCTCC	6 cut(s)	131, 205, 374, 589, 703, 970
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	320, 642, 893
MaeII	ACGT	1 cut(s)	936
MaeIII	GTNAC	2 cut(s)	253, 762
MalI	GATC	3 cut(s)	546, 1031, 1087
MboI	GATC	3 cut(s)	544, 1029, 1085
MboII	GAAGA	5 cut(s)	289, 344, 590, 826, 1024
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	1029
MhlI	GDGCHC	2 cut(s)	96, 136
MlyI	GAGTC	2 cut(s)	67, 1090
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	68, 553, 574, 599, 660, 829, 1053
MseI	TTAA	2 cut(s)	746, 1071
MslI	CAYNNNNRTG	4 cut(s)	68, 657, 726, 773
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	4 cut(s)	129, 425, 845, 887
MspR9I	CCNGG	3 cut(s)	129, 711, 960
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	711, 960
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	451, 658
NdeII	GATC	3 cut(s)	544, 1029, 1085
NlaIII	CATG	8 cut(s)	32, 403, 455, 478, 662, 725, 772, 946
NlaIV	GGNNCC	2 cut(s)	127, 370
NmuCI	GTSAC	1 cut(s)	762
NspI	RCATGY	3 cut(s)	403, 478, 725
NspV	TTCGAA	1 cut(s)	576
PagI	TCATGA	1 cut(s)	942
PaqCI	CACCTGC	1 cut(s)	182
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	663
PflFI	GACNNNGTC	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	2 cut(s)	67, 1089
PpsI	GAGTC	2 cut(s)	67, 1089
PpuMI	RGGWCCY	1 cut(s)	125
PscI	ACATGT	1 cut(s)	474
Psp124BI	GAGCTC	2 cut(s)	96, 136
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	709, 958
PspGI	CCWGG	2 cut(s)	709, 958
PspN4I	GGNNCC	2 cut(s)	127, 370
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	1029
PsyI	GACNNNGTC	1 cut(s)	760
RsaI	GTAC	2 cut(s)	410, 783
RsaNI	GTAC	2 cut(s)	409, 782
RseI	CAYNNNNRTG	4 cut(s)	68, 657, 726, 773
SacI	GAGCTC	2 cut(s)	96, 136
SaqAI	TTAA	2 cut(s)	746, 1071
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	544, 1029, 1085
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	67, 1090
ScrFI	CCNGG	3 cut(s)	129, 711, 960
SduI	GDGCHC	2 cut(s)	96, 136
SfcI	CTRYAG	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	576
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	4 cut(s)	68, 657, 726, 773
SmlI	CTYRAG	2 cut(s)	404, 1070
SmoI	CTYRAG	2 cut(s)	404, 1070
SpeI	ACTAGT	1 cut(s)	892
SsiI	CCGC	1 cut(s)	1037
SspMI	CTAG	3 cut(s)	320, 642, 893
SstI	GAGCTC	2 cut(s)	96, 136
StyD4I	CCNGG	3 cut(s)	127, 709, 958
StyI	CCWWGG	2 cut(s)	451, 658
TaaI	ACNGT	2 cut(s)	809, 830
TaiI	ACGT	1 cut(s)	939
TaqI	TCGA	3 cut(s)	576, 1062, 1084
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	2 cut(s)	746, 1071
Tru9I	TTAA	2 cut(s)	746, 1071
TscAI	CASTG	1 cut(s)	812
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	4 cut(s)	221, 345, 816, 929
TspGWI	ACGGA	1 cut(s)	997
TspRI	CASTG	1 cut(s)	812
Tth111I	GACNNNGTC	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	6 cut(s)	52, 165, 199, 210, 526, 986
XceI	RCATGY	3 cut(s)	403, 478, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	3 cut(s)	320, 642, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.