Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008670

Physical Location & Seq

Genomic Coordinates Forward (+)

43210492 .. 43213087

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGAGCTGCAATGTGTTTTCCAAAAGTTTTATGGTTTTTACTTATGAGTTTTCTGTGACAATAGACTTGCAGGGGAATAAACTAACTGGTCAAATCCCGGATGAGATTGGCAACTGTGCTTCTCTTATGTATCTGATGGCACCATCTAGAATTCATGTTACTTGTGCACTAGTTTATGACAAAACATCAACAGGAAGGATTCACAAAGGAGTGTGTTCAACCTGGATGAAGAATTATGTGCCTTCGACAAAAAGTGATGATTGGGATATTGTAGTGAAAACTGATTGTGCCAAAAAAAGTCCCATCTCATTTCAGGAAAGAACAGAACCAGATCAAGCAAGTAGGGAGCATGTCATAGCTTCCGACATCTGGAACATGCTATCTCAAGGAGGGTATTCACACAACGCAGTTCTAGATATCACACAATGGATTTCAATAAGTAACGTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006355 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015074 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903506 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NOT2_3_5

Protein Analysis

151

Amino Acids

16.94

Weight (kDa)

6.39

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07705 AT1G07705
fragaria_vesca	FvH4_3g34620 FvH4_3g34620 FvH4_3g34620
malus_domestica	MD03G1103300.v1.1 MD11G1117100.v1.1
prunus_persica	Prupe.6G087300_v2.0.a1
pyrus_communis	pycom03g08390 pycom11g09830
rosa_chinensis	RchiOBHm_Chr5g0062331
rosa_laevigata	RLG00000035550
rosa_multiflora	Rmu_sc0006295.1_g000002 Rmu_ssc0000409.1_g000034
rosa_roxburghii	Rroxscaffold_1G00018350
rosa_rugosa	Rorug05G0348500 Rorug05G0348600 Rorug05G0348700
rosa_samantha	Rh5AG408400 Rh5BG422100 Rh5CG446100 Rh5DG437100
rosa_wichuraiana	Rw5G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	222, 438
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	9, 362
AluI	AGCT	2 cut(s)	9, 362
Alw21I	GWGCWC	1 cut(s)	172
Alw44I	GTGCAC	1 cut(s)	168
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	3 cut(s)	133, 154, 314
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	4 cut(s)	150, 173, 416, 454
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	101, 226
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	101, 226
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	109, 234
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	109, 234
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	2 cut(s)	356, 382
BstSCI	CCNGG	2 cut(s)	99, 224
BstSLI	GKGCMC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	109, 234
CviAII	CATG	3 cut(s)	158, 353, 379
CviJI	RGCY	2 cut(s)	9, 362
CviKI_1	RGCY	2 cut(s)	9, 362
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	421
FaeI	CATG	3 cut(s)	161, 356, 382
FaiI	YATR	9 cut(s)	35, 48, 131, 159, 180, 240, 354, 359, 380
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	157, 352, 378
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	2 cut(s)	116, 241
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	4 cut(s)	150, 173, 416, 454
GluI	GCNGC	1 cut(s)	10
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	161, 356, 382
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	138, 367
Hpy188III	TCNNGA	4 cut(s)	150, 317, 373, 416
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	192, 255
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	12, 73, 170
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	161, 356, 382
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	59, 75, 114, 180, 211, 238, 302, 345, 358
MaeI	CTAG	4 cut(s)	150, 173, 416, 454
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	58, 160, 443
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	2 cut(s)	16, 244
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	153, 235
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	1 cut(s)	386
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	101, 226
MvaI	CCWGG	1 cut(s)	226
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	161, 356, 382
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	2 cut(s)	356, 382
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	144
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	101, 226
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	4 cut(s)	11, 227, 364, 450
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	2 cut(s)	153, 235
SspMI	CTAG	4 cut(s)	150, 173, 416, 454
StyD4I	CCNGG	2 cut(s)	99, 224
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	153, 235
TfiI	GAWTC	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	17, 146, 245
VneI	GTGCAC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	153
XbaI	TCTAGA	2 cut(s)	149, 415
XceI	RCATGY	2 cut(s)	356, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	4 cut(s)	150, 173, 416, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.