Rmu_ssc0000409.1_g000034

transcription complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000409.1
Physical Location & Seq
Forward (+)
127899 .. 132584
4686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000409.1_g000034.1.cds

Sequence Viewer

Length: 1992 bp
atgtcgggattacttaattcttctctaaacggatcagcctcaaatcttccagatagtagtggacgttttgccacatctttctctggtcaatcgggtgctgcctctcctgtatttcatcacgcaggatctattcaaggattgcataaccttcatgggagcttcaatgttccgaacatgcctggtacattaacttcaagaaactcaacattaactaatgttccttctggtggagtccaacaaccaactggaagcctttctggtggacgattttcatcaaataatcttcctgttgctctttctcagttatctcatggaagctctcatggacattcaggagttactaatagaggaggtataagtgtagttggaaaccctggatttagtagtagcacaaatggaattggcggttctattcctgggattctccctacctctgctgcaattggtaaccgtaatgctgttcccggattgggtgtaggccaaattttgggaaatgcaggtccacgaattacaagttccatgggaaacatggttggtgggggcaacattgggaggagtattagttctggtggaggcttgtcggtgcctggtcttacttcccgtctaaatttaagtggaaatagtggatctggtagcttaactgtccaagggcagaatcgcttgatgggtggtgtgcttccacaagggtccccgcaggttatttcaatgttgggaaattcttatccaagtgctggaggtccactttctcaaagccacgtccaagtgaataatttgagctctatgggaatgttgaatgatgtaaattctaatgacagttctccttttgacatgaatgatttccctcaattaacaagccggccaagttctgcaggaggccctcaagggcaattgggttcattgcgaaaacaaggtcttggtgttagtcctattgttcaacaaaaccaagagttcagcatccaaaatgaagattttccggctttgcctggatttaaaggtggtaattctgattatccaatggatatgcaccagaaagaacaactccatgacaataccgtgtcaatgatgcaatctcagcacttctcaatgggaagatctgccggatttaacttgggagggacttattcatctcatcgtccacagcagcagcaacaacatgctccatcagtcagcaatagtggtgtctcattttctcaagtaaacaatcaggatcttctccatttgcatggctcagatatgttcccatcatcgcattcaacctatcattcacagacaagtggacctcctggcattggattgagacctttaaattcggccaatacagtttctggcatgggttcttatgaccagcttatccagcagtatcaacaacaccaaaatcagtcacagtttcgtctgcaacagatgtcaccggtcaatcaatcatttagggatcagggaattaagtcaatgcagacctcgcaatctgctccagacccatttggtttgcttggtttgttaagtgttataaggatgagtgatcctgatttaacatctcttgcacttggaattgatttgacaacgcttggcttaaacttgaattcaacagaaaatctgcacaagacttttggttccccatggtctgacgagccagctaagggtgatccagagtttagtgttccccaatgttattatgctaaacaaccacctgcactacatcaaggatatttttcaaagttctcggtggaaacattattttacatattttacagcatgcctaaagatgaagctcaattacatgctgcaaatgaactttataacaagggctggttatatcacaaggagcaccatctatggattgcaagagtccccaacatggagccacttgtcaagacaaacacatatgagagagggtcttatcactgttttgatcccaacacatttgaaatagttcgaaaggaaaattttgttgtgcattatgatgtgctggataagagaccgtccttaccgcattga

Protein Analysis

663

Amino Acids

70.43

Weight (kDa)

6.98

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1505, 1794
AarI CACCTGC 1 cut(s) 1693
Acc36I ACCTGC 3 cut(s) 488, 685, 1693
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 2 cut(s) 487, 731
AciI CCGC 3 cut(s) 405, 692, 1985
AclWI GGATC 8 cut(s) 40, 133, 634, 1215, 1437, 1511, 1634, 1901
AcoI YGGCCR 2 cut(s) 857, 1311
AcsI RAATTY 7 cut(s) 483, 607, 715, 802, 1306, 1576, 1939
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 7 cut(s) 227, 470, 487, 731, 1289, 1634, 1852
AgeI ACCGGT 1 cut(s) 1408
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 6 cut(s) 178, 373, 415, 586, 982, 1282
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 7 cut(s) 159, 318, 636, 777, 1348, 1631, 1766
AluI AGCT 7 cut(s) 159, 318, 636, 777, 1348, 1631, 1766
Alw21I GWGCWC 2 cut(s) 779, 1824
Alw26I GTCTC 3 cut(s) 1186, 1291, 1966
AlwI GGATC 8 cut(s) 40, 133, 634, 1215, 1437, 1511, 1634, 1901
AlwNI CAGNNNCTG 1 cut(s) 1325
AoxI GGCC 4 cut(s) 478, 857, 874, 1311
ApeKI GCWGC 5 cut(s) 98, 437, 1141, 1144, 1778
ApoI RAATTY 7 cut(s) 483, 607, 715, 802, 1306, 1576, 1939
ArsI GACNNNNNNTTYG 2 cut(s) 895, 927
AsiGI ACCGGT 1 cut(s) 1408
Asp700I GAANNNNTTC 4 cut(s) 253, 836, 969, 1926
AspS9I GGNCC 5 cut(s) 500, 687, 737, 875, 1277
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 1398, 1649
AsuII TTCGAA 1 cut(s) 1930
AvaII GGWCC 4 cut(s) 500, 687, 737, 1277
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 779
BarI GAAGNNNNNNTAC 4 cut(s) 175, 207, 1755, 1787
Bbv12I GWGCWC 2 cut(s) 779, 1824
BbvI GCAGC 5 cut(s) 85, 424, 1153, 1156, 1765
BccI CCATC 4 cut(s) 658, 1168, 1249, 1833
BciT130I CCWGG 6 cut(s) 180, 375, 417, 588, 984, 1284
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 1186, 1291, 1966
BfmI CTRYAG 1 cut(s) 867
BfuAI ACCTGC 3 cut(s) 488, 685, 1693
BglII AGATCT 1 cut(s) 1091
BisI GCNGC 5 cut(s) 99, 438, 1142, 1145, 1779
BlsI GCNGC 5 cut(s) 100, 439, 1143, 1146, 1780
Bme1390I CCNGG 7 cut(s) 180, 375, 417, 465, 588, 984, 1284
Bme18I GGWCC 4 cut(s) 500, 687, 737, 1277
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 5 cut(s) 500, 687, 737, 875, 1277
BmiI GGNNCC 5 cut(s) 585, 688, 689, 1609, 1857
BmrFI CCNGG 7 cut(s) 180, 375, 417, 465, 588, 984, 1284
BmsI GCATC 2 cut(s) 963, 1053
BpmI CTGGAG 2 cut(s) 753, 1452
Bpu10I CCTNAGC 1 cut(s) 1632
Bpu14I TTCGAA 1 cut(s) 1930
BpuEI CTTGAG 2 cut(s) 864, 1176
BpuMI CCSGG 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 271
BsaI GGTCTC 2 cut(s) 1291, 1966
BsaJI CCNNGG 5 cut(s) 373, 416, 519, 646, 1613
BsaWI WCCGGW 1 cut(s) 1408
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 7 cut(s) 227, 470, 487, 731, 1289, 1634, 1852
Bse118I RCCGGY 2 cut(s) 855, 1408
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 896
Bse8I GATNNNNATC 1 cut(s) 271
BseBI CCWGG 6 cut(s) 180, 375, 417, 588, 984, 1284
BseDI CCNNGG 5 cut(s) 373, 416, 519, 646, 1613
BseGI GGATG 2 cut(s) 954, 1515
BseJI GATNNNNATC 1 cut(s) 271
BseLI CCNNNNNNNGG 7 cut(s) 227, 470, 487, 731, 1289, 1634, 1852
BseMI GCAATG 1 cut(s) 896
BseMII CTCAG 3 cut(s) 314, 1085, 1242
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 363, 568
BseXI GCAGC 5 cut(s) 85, 424, 1153, 1156, 1765
BsgI GTGCAG 2 cut(s) 1577, 1671
BshFI GGCC 4 cut(s) 480, 859, 876, 1313
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 1408
BsiHKAI GWGCWC 2 cut(s) 779, 1824
BsiSI CCGG 5 cut(s) 465, 856, 974, 1098, 1409
BslFI GGGAC 3 cut(s) 673, 1129, 1829
BslI CCNNNNNNNGG 7 cut(s) 227, 470, 487, 731, 1289, 1634, 1852
BsmAI GTCTC 3 cut(s) 1186, 1291, 1966
BsmFI GGGAC 3 cut(s) 673, 1129, 1829
BsmI GAATGC 1 cut(s) 1249
BsnI GGCC 4 cut(s) 480, 859, 876, 1313
Bso31I GGTCTC 2 cut(s) 1291, 1966
Bsp119I TTCGAA 1 cut(s) 1930
Bsp1286I GDGCHC 2 cut(s) 779, 1824
Bsp143I GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
Bsp19I CCATGG 2 cut(s) 519, 1613
BspACI CCGC 3 cut(s) 405, 692, 1985
BspANI GGCC 4 cut(s) 480, 859, 876, 1313
BspCNI CTCAG 3 cut(s) 313, 1084, 1241
BspLI GGNNCC 5 cut(s) 585, 688, 689, 1609, 1857
BspMAI CTGCAG 1 cut(s) 871
BspMI ACCTGC 3 cut(s) 488, 685, 1693
BspPI GGATC 8 cut(s) 40, 133, 634, 1215, 1437, 1511, 1634, 1901
BspT104I TTCGAA 1 cut(s) 1930
BspT107I GGYRCC 1 cut(s) 583
BspTNI GGTCTC 2 cut(s) 1291, 1966
BsrDI GCAATG 1 cut(s) 896
BsrFI RCCGGY 2 cut(s) 855, 1408
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 2 cut(s) 855, 1408
BssECI CCNNGG 5 cut(s) 373, 416, 519, 646, 1613
BssMI GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
BssT1I CCWWGG 3 cut(s) 519, 646, 1613
Bst2UI CCWGG 6 cut(s) 180, 375, 417, 588, 984, 1284
Bst4CI ACNGT 8 cut(s) 452, 643, 815, 1054, 1321, 1386, 1901, 1977
BstBI TTCGAA 1 cut(s) 1930
BstC8I GCNNGC 3 cut(s) 857, 1629, 1751
BstDEI CTNAG 4 cut(s) 300, 1071, 1228, 1632
BstDSI CCRYGG 2 cut(s) 519, 1613
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 2 cut(s) 954, 1515
BstKTI GATC 9 cut(s) 35, 128, 629, 1094, 1210, 1432, 1519, 1642, 1909
BstMAI GTCTC 3 cut(s) 1186, 1291, 1966
BstMBI GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
BstMWI GCNNNNNNNGC 3 cut(s) 1072, 1354, 1456
BstNI CCWGG 6 cut(s) 180, 375, 417, 588, 984, 1284
BstNSI RCATGY 4 cut(s) 178, 1157, 1753, 1778
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 7 cut(s) 178, 373, 415, 463, 586, 982, 1282
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 5 cut(s) 85, 424, 1153, 1156, 1765
BstX2I RGATCY 4 cut(s) 125, 626, 1091, 1207
BstXI CCANNNNNNTGG 1 cut(s) 1223
BstYI RGATCY 4 cut(s) 125, 626, 1091, 1207
BsuRI GGCC 4 cut(s) 480, 859, 876, 1313
BtgI CCRYGG 2 cut(s) 519, 1613
BtgZI GCGATG 1 cut(s) 1230
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 2 cut(s) 954, 1515
BtsIMutI CAGTG 1 cut(s) 1897
BveI ACCTGC 3 cut(s) 488, 685, 1693
Cac8I GCNNGC 3 cut(s) 857, 1629, 1751
CaiI CAGNNNCTG 1 cut(s) 1325
Cfr10I RCCGGY 2 cut(s) 855, 1408
Cfr13I GGNCC 5 cut(s) 500, 687, 737, 875, 1277
Csp6I GTAC 1 cut(s) 183
CspAI ACCGGT 1 cut(s) 1408
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 4 cut(s) 300, 1071, 1228, 1632
DpnI GATC 9 cut(s) 34, 127, 628, 1093, 1209, 1431, 1518, 1641, 1908
DpnII GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
DraI TTTAAA 2 cut(s) 991, 1305
EaeI YGGCCR 2 cut(s) 857, 1311
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 3 cut(s) 519, 646, 1613
Eco24I GRGCYC 1 cut(s) 779
Eco31I GGTCTC 2 cut(s) 1291, 1966
Eco47I GGWCC 4 cut(s) 500, 687, 737, 1277
Eco53kI GAGCTC 1 cut(s) 777
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 777
EcoO109I RGGNCCY 2 cut(s) 687, 875
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 1576
EcoRII CCWGG 6 cut(s) 178, 373, 415, 586, 982, 1282
EcoT14I CCWWGG 3 cut(s) 519, 646, 1613
EcoT38I GRGCYC 1 cut(s) 779
ErhI CCWWGG 3 cut(s) 519, 646, 1613
FaqI GGGAC 3 cut(s) 673, 1129, 1829
FauI CCCGC 1 cut(s) 699
FauNDI CATATG 1 cut(s) 1879
Fnu4HI GCNGC 5 cut(s) 99, 438, 1142, 1145, 1779
FokI GGATG 2 cut(s) 941, 1522
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 5 cut(s) 99, 438, 1142, 1145, 1779
GluI GCNGC 5 cut(s) 99, 438, 1142, 1145, 1779
GsuI CTGGAG 2 cut(s) 753, 1452
HaeIII GGCC 4 cut(s) 480, 859, 876, 1313
HapII CCGG 5 cut(s) 465, 856, 974, 1098, 1409
HinfI GANTC 4 cut(s) 231, 421, 655, 1842
HpaII CCGG 5 cut(s) 465, 856, 974, 1098, 1409
HphI GGTGA 2 cut(s) 1398, 1649
Hpy166II GTNNAC 7 cut(s) 62, 263, 503, 740, 1136, 1198, 1277
Hpy188I TCNGA 4 cut(s) 171, 1006, 1231, 1621
Hpy188III TCNNGA 9 cut(s) 6, 50, 195, 333, 1205, 1469, 1520, 1643, 1867
Hpy8I GTNNAC 7 cut(s) 62, 263, 503, 740, 1136, 1198, 1277
HpyAV CCTTC 2 cut(s) 158, 231
HpyCH4III ACNGT 8 cut(s) 452, 643, 815, 1054, 1321, 1386, 1901, 1977
HpyCH4IV ACGT 2 cut(s) 64, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 1072, 1354, 1456
HpyF3I CTNAG 4 cut(s) 300, 1071, 1228, 1632
HpySE526I ACGT 2 cut(s) 64, 756
KflI GGGWCCC 1 cut(s) 687
KroI GCCGGC 1 cut(s) 855
KroNI GCCGGC 1 cut(s) 857
Kzo9I GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
LmnI GCTCC 5 cut(s) 156, 1162, 1471, 1819, 1855
Lsp1109I GCAGC 5 cut(s) 85, 424, 1153, 1156, 1765
LweI GCATC 2 cut(s) 963, 1053
MaeII ACGT 2 cut(s) 64, 756
MaeIII GTNAC 4 cut(s) 337, 446, 1380, 1404
MalI GATC 9 cut(s) 34, 127, 628, 1093, 1209, 1431, 1518, 1641, 1908
MboI GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
MboII GAAGA 6 cut(s) 12, 38, 275, 977, 1101, 1202
MfeI CAATTG 2 cut(s) 441, 887
MflI RGATCY 4 cut(s) 125, 626, 1091, 1207
MhlI GDGCHC 2 cut(s) 779, 1824
MlyI GAGTC 2 cut(s) 240, 1851
MmeI TCCRAC 2 cut(s) 259, 346
MroNI GCCGGC 1 cut(s) 855
MroXI GAANNNNTTC 4 cut(s) 253, 836, 969, 1926
MslI CAYNNNNRTG 2 cut(s) 1221, 1956
MspI CCGG 5 cut(s) 465, 856, 974, 1098, 1409
MspR9I CCNGG 7 cut(s) 180, 375, 417, 465, 588, 984, 1284
MunI CAATTG 2 cut(s) 441, 887
Mva1269I GAATGC 1 cut(s) 1249
MvaI CCWGG 6 cut(s) 180, 375, 417, 588, 984, 1284
MwoI GCNNNNNNNGC 3 cut(s) 1072, 1354, 1456
NaeI GCCGGC 1 cut(s) 857
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 2 cut(s) 519, 1613
NdeI CATATG 1 cut(s) 1879
NdeII GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
NgoMIV GCCGGC 1 cut(s) 855
NlaIV GGNNCC 5 cut(s) 585, 688, 689, 1609, 1857
NmuCI GTSAC 2 cut(s) 1380, 1404
NspI RCATGY 4 cut(s) 178, 1157, 1753, 1778
NspV TTCGAA 1 cut(s) 1930
PaeI GCATGC 1 cut(s) 1753
PaqCI CACCTGC 1 cut(s) 1693
PctI GAATGC 1 cut(s) 1249
PdiI GCCGGC 1 cut(s) 857
PdmI GAANNNNTTC 4 cut(s) 253, 836, 969, 1926
PfeI GAWTC 2 cut(s) 421, 655
PflMI CCANNNNNTGG 2 cut(s) 487, 731
PfoI TCCNGGA 1 cut(s) 463
PinAI ACCGGT 1 cut(s) 1408
PkrI GCNGC 5 cut(s) 100, 439, 1143, 1146, 1780
PleI GAGTC 2 cut(s) 239, 1850
PpsI GAGTC 2 cut(s) 239, 1850
PpuMI RGGWCCY 1 cut(s) 687
PsiI TTATAA 2 cut(s) 1505, 1794
Psp124BI GAGCTC 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 6 cut(s) 178, 373, 415, 586, 982, 1282
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 6 cut(s) 178, 373, 415, 586, 982, 1282
PspN4I GGNNCC 5 cut(s) 585, 688, 689, 1609, 1857
PspPI GGNCC 5 cut(s) 500, 687, 737, 875, 1277
PspPPI RGGWCCY 1 cut(s) 687
PstI CTGCAG 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 1325
PsuI RGATCY 4 cut(s) 125, 626, 1091, 1207
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 1221, 1956
SacI GAGCTC 1 cut(s) 779
SatI GCNGC 5 cut(s) 99, 438, 1142, 1145, 1779
Sau3AI GATC 9 cut(s) 32, 125, 626, 1091, 1207, 1429, 1516, 1639, 1906
Sau96I GGNCC 5 cut(s) 500, 687, 737, 875, 1277
SchI GAGTC 2 cut(s) 240, 1851
ScrFI CCNGG 7 cut(s) 180, 375, 417, 465, 588, 984, 1284
SduI GDGCHC 2 cut(s) 779, 1824
SfaNI GCATC 2 cut(s) 963, 1053
SfcI CTRYAG 1 cut(s) 867
SfuI TTCGAA 1 cut(s) 1930
SinI GGWCC 4 cut(s) 500, 687, 737, 1277
SmiMI CAYNNNNRTG 2 cut(s) 1221, 1956
SmlI CTYRAG 2 cut(s) 879, 1191
SmoI CTYRAG 2 cut(s) 879, 1191
SphI GCATGC 1 cut(s) 1753
SsiI CCGC 3 cut(s) 405, 692, 1985
SstI GAGCTC 1 cut(s) 779
StyD4I CCNGG 7 cut(s) 178, 373, 415, 463, 586, 982, 1282
StyI CCWWGG 3 cut(s) 519, 646, 1613
TaaI ACNGT 8 cut(s) 452, 643, 815, 1054, 1321, 1386, 1901, 1977
TaiI ACGT 2 cut(s) 67, 759
TaqI TCGA 1 cut(s) 1930
TfiI GAWTC 2 cut(s) 421, 655
TscAI CASTG 1 cut(s) 1904
TseFI GTSAC 2 cut(s) 1380, 1404
TseI GCWGC 5 cut(s) 98, 437, 1141, 1144, 1778
Tsp45I GTSAC 2 cut(s) 1380, 1404
TspDTI ATGAA 9 cut(s) 104, 140, 261, 845, 885, 978, 1113, 1776, 1800
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 1904
Van91I CCANNNNNTGG 2 cut(s) 487, 731
VpaK11BI GGWCC 4 cut(s) 500, 687, 737, 1277
XapI RAATTY 7 cut(s) 483, 607, 715, 802, 1306, 1576, 1939
XceI RCATGY 4 cut(s) 178, 1157, 1753, 1778
XcmI CCANNNNNNNNNTGG 2 cut(s) 242, 526
XmnI GAANNNNTTC 4 cut(s) 253, 836, 969, 1926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.