Rh5BG422100

transcription complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
68204392 .. 68211259
6868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG422100.1

Sequence Viewer

Length: 1764 bp
ATGCCTGGTACATTAACTTCAAGAAACTCAACATTAACTAATGTTCCTTCTGGTGGAGTCCAACAACCAACTGGAAGCCTTTCTGGTGGACGATTTTCATCAAATAATCTTCCTGTTGCTCTTTCTCAGTTATCTCATGGAAGCTCTCATGGACATTCAGGAGTCACTAATAGAGGAGGTATAAGTGTAGTTGGAAACCCTGGATTTAGTAGTAGCACAAATGGAATTGGCGGTTCTATTCCTGGGATTCTCCCTACCTCTGCTGCAATTGGTAACCGTAATGCTGTTCCCGGATTGGGTGTAGGCCAAATTTTGGGAAATGCAGGTCCACGAATTACAAGTTCCATGGGAAACATGGTTGGTGGGGGCAACATTGGGAGGAGTATTAGTTCTGGTGGAGGCTTGTCGGTGCCTGGTCTTACTTCCCGTCTAAATTTAAGTGGAAATAGTGGATCTGGTAGCTTAACTGTCCAAGGGCAGAATCGCTTGATGGGTGGTGTGCTTCCACAAGGGTCCCCGCAGGTTATTTCAATGTTGGGAAATTCTTATCCAAGTGCTGGAGGTCCACTTTCTCAAAGCCACGTCCAAGTGAATAATTTGAGCTCTATGGGAATGTTGAATGATGTAAATTCTAATGACAGTTCTCCTTTTGACATGAATGATTTCCCTCAATTAACAAGCCGGCCAAGTTCTGCAGGAGGCCCTCAAGGGCAATTGGGTTCATTGCGAAAACAAGGTCTTGGTGTTAGTCCTATTGTTCAACAAAACCAAGAGTTCAGCATCCAAAATGAAGATTTTCCGGCTTTGCCTGGATTTAAAGGTGGTAATTCTGATTATCCAATGGATATGCACCAGAAAGAACAACTCCATGACAATACCGTGTCAATGATGCAATCTCAGCACTTCTCAGTGGGTTCAAAGCTTCACTTATACAAAATTCTTTCCCAGTTTTTATTATTATTATTATTATTTTATTTATTTTTATTATTATTATTTAACTTGGGTCTTATGTGTCATTGGTTAACCCTTAAATTTTCATATATTGGTTTTCAGATGGGAAGATCTACCGGATTTAACTTGGGAGGGACTTATTCATCTCATCGTCCACAGCAGCAGCAACAACATGCTCCATCAGTCAGCAATAGTGGTGTCTCATTTTCTCAAGTAAACAATCAGGATCTTCTCCATTTGCATGGCTCAGATATGTTCCCATCATCGCATTCAACCTATCATTCACAGACAAGTGGACCTCCTGGCATTGGATTGAGACCTTTAAATTCGGCCAATACAGTTTCTGGCATGGGTTCTTATGACCAGCTTATCCAGCAGTATCAACAACACCAAAATCAGTCACAGTTTCGTCTGCAACAGATGTCACCGGTCAATCAATCATTTAGGGATCAGGGAATTAAGTCAATGCAGACCTCGCAATCTGCTCCAGACCCATTTGGTTTGCTTGGTTTGTTAAGTGTTATAAGGATGAGTGATCCTGATTTAACATCTCTGGCACTTGGAATTGATTTGACAACGCTTGGCTTAAACTTGAATTCAACAGAAAATCTGCACAAGACTTTTGGTTCCCCATGGTCTGACGAGCCAGCTAAGGGTGATCCAGAGTTTAGTGTTCCCCAATGTTATTATGCTAAACAACCACCTGCACTACATCAAGGATATTTTTCAAAGTTCTCGGTGGAAACATTATTTTACATATTTTACAGCATGCCTAAAGATGAAGCTCAATTACATGCTGCAAATGAACTGTAA

Protein Analysis

587

Amino Acids

62.32

Weight (kDa)

7.35

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOT2_3_5_C PF04153 522 - 587 6.3e-16 NOT2/NOT3/NOT5 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1475
AarI CACCTGC 1 cut(s) 1663
Acc36I ACCTGC 3 cut(s) 314, 511, 1663
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 2 cut(s) 313, 557
AciI CCGC 2 cut(s) 231, 518
AclWI GGATC 5 cut(s) 460, 1185, 1407, 1481, 1604
AcoI YGGCCR 2 cut(s) 683, 1281
AcsI RAATTY 8 cut(s) 309, 433, 541, 628, 936, 1031, 1276, 1546
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 6 cut(s) 53, 296, 313, 557, 1259, 1604
AgeI ACCGGT 1 cut(s) 1378
AgsI TTSAA 9 cut(s) 21, 531, 619, 761, 918, 1224, 1546, 1551, 1680
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 6 cut(s) 4, 199, 241, 412, 808, 1252
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 7 cut(s) 144, 462, 603, 922, 1318, 1601, 1736
AluI AGCT 7 cut(s) 144, 462, 603, 922, 1318, 1601, 1736
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 1156, 1261
AlwI GGATC 5 cut(s) 460, 1185, 1407, 1481, 1604
AlwNI CAGNNNCTG 1 cut(s) 1295
AoxI GGCC 4 cut(s) 304, 683, 700, 1281
ApeKI GCWGC 4 cut(s) 263, 1111, 1114, 1748
ApoI RAATTY 8 cut(s) 309, 433, 541, 628, 936, 1031, 1276, 1546
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AsiGI ACCGGT 1 cut(s) 1378
Asp700I GAANNNNTTC 3 cut(s) 79, 662, 795
AspS9I GGNCC 5 cut(s) 326, 513, 563, 701, 1247
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 1368, 1619
AvaII GGWCC 4 cut(s) 326, 513, 563, 1247
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 605
BarI GAAGNNNNNNTAC 3 cut(s) 33, 1725, 1757
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 4 cut(s) 250, 1123, 1126, 1735
BccI CCATC 4 cut(s) 484, 1048, 1138, 1219
BciT130I CCWGG 6 cut(s) 6, 201, 243, 414, 810, 1254
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 1156, 1261
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 3 cut(s) 314, 511, 1663
BglII AGATCT 1 cut(s) 1061
BisI GCNGC 4 cut(s) 264, 1112, 1115, 1749
BlsI GCNGC 4 cut(s) 265, 1113, 1116, 1750
Bme1390I CCNGG 7 cut(s) 6, 201, 243, 291, 414, 810, 1254
Bme18I GGWCC 4 cut(s) 326, 513, 563, 1247
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 5 cut(s) 326, 513, 563, 701, 1247
BmiI GGNNCC 4 cut(s) 411, 514, 515, 1579
BmrFI CCNGG 7 cut(s) 6, 201, 243, 291, 414, 810, 1254
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 2 cut(s) 789, 879
BmuI ACTGGG 1 cut(s) 940
BpmI CTGGAG 2 cut(s) 579, 1422
Bpu10I CCTNAGC 1 cut(s) 1602
BpuEI CTTGAG 2 cut(s) 690, 1146
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 1261
BsaJI CCNNGG 5 cut(s) 199, 242, 345, 472, 1583
BsaWI WCCGGW 2 cut(s) 1067, 1378
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 296, 313, 557, 1259, 1604
Bse118I RCCGGY 2 cut(s) 681, 1378
Bse1I ACTGG 2 cut(s) 76, 946
Bse3DI GCAATG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 6 cut(s) 6, 201, 243, 414, 810, 1254
BseDI CCNNGG 5 cut(s) 199, 242, 345, 472, 1583
BseGI GGATG 2 cut(s) 780, 1485
BseJI GATNNNNATC 1 cut(s) 97
BseLI CCNNNNNNNGG 6 cut(s) 53, 296, 313, 557, 1259, 1604
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 4 cut(s) 140, 911, 921, 1212
BseNI ACTGG 2 cut(s) 76, 946
BseRI GAGGAG 2 cut(s) 189, 394
BseXI GCAGC 4 cut(s) 250, 1123, 1126, 1735
BsgI GTGCAG 2 cut(s) 1547, 1641
BshFI GGCC 4 cut(s) 306, 685, 702, 1283
BshNI GGYRCC 1 cut(s) 409
BshTI ACCGGT 1 cut(s) 1378
BsiHKAI GWGCWC 1 cut(s) 605
BsiSI CCGG 5 cut(s) 291, 682, 800, 1068, 1379
BslFI GGGAC 2 cut(s) 499, 1099
BslI CCNNNNNNNGG 6 cut(s) 53, 296, 313, 557, 1259, 1604
BsmAI GTCTC 2 cut(s) 1156, 1261
BsmFI GGGAC 2 cut(s) 499, 1099
BsmI GAATGC 1 cut(s) 1219
BsnI GGCC 4 cut(s) 306, 685, 702, 1283
Bso31I GGTCTC 1 cut(s) 1261
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
Bsp19I CCATGG 2 cut(s) 345, 1583
BspACI CCGC 2 cut(s) 231, 518
BspANI GGCC 4 cut(s) 306, 685, 702, 1283
BspCNI CTCAG 4 cut(s) 139, 910, 920, 1211
BspLI GGNNCC 4 cut(s) 411, 514, 515, 1579
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 3 cut(s) 314, 511, 1663
BspPI GGATC 5 cut(s) 460, 1185, 1407, 1481, 1604
BspT107I GGYRCC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 1261
BsrDI GCAATG 1 cut(s) 722
BsrFI RCCGGY 2 cut(s) 681, 1378
BsrI ACTGG 2 cut(s) 76, 946
BssAI RCCGGY 2 cut(s) 681, 1378
BssECI CCNNGG 5 cut(s) 199, 242, 345, 472, 1583
BssMI GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
BssT1I CCWWGG 3 cut(s) 345, 472, 1583
Bst2UI CCWGG 6 cut(s) 6, 201, 243, 414, 810, 1254
Bst4CI ACNGT 7 cut(s) 278, 469, 641, 880, 1291, 1356, 1761
BstC8I GCNNGC 3 cut(s) 683, 1599, 1721
BstDEI CTNAG 5 cut(s) 126, 897, 907, 1198, 1602
BstDSI CCRYGG 2 cut(s) 345, 1583
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 780, 1485
BstKTI GATC 6 cut(s) 455, 1064, 1180, 1402, 1489, 1612
BstMAI GTCTC 2 cut(s) 1156, 1261
BstMBI GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
BstMWI GCNNNNNNNGC 3 cut(s) 898, 1324, 1426
BstNI CCWGG 6 cut(s) 6, 201, 243, 414, 810, 1254
BstNSI RCATGY 3 cut(s) 1127, 1723, 1748
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 7 cut(s) 4, 199, 241, 289, 412, 808, 1252
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 4 cut(s) 250, 1123, 1126, 1735
BstX2I RGATCY 3 cut(s) 452, 1061, 1177
BstXI CCANNNNNNTGG 1 cut(s) 1193
BstYI RGATCY 3 cut(s) 452, 1061, 1177
BsuRI GGCC 4 cut(s) 306, 685, 702, 1283
BtgI CCRYGG 2 cut(s) 345, 1583
BtgZI GCGATG 1 cut(s) 1200
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 2 cut(s) 780, 1485
BtsIMutI CAGTG 1 cut(s) 915
BveI ACCTGC 3 cut(s) 314, 511, 1663
Cac8I GCNNGC 3 cut(s) 683, 1599, 1721
CaiI CAGNNNCTG 1 cut(s) 1295
Cfr10I RCCGGY 2 cut(s) 681, 1378
Cfr13I GGNCC 5 cut(s) 326, 513, 563, 701, 1247
Csp6I GTAC 1 cut(s) 9
CspAI ACCGGT 1 cut(s) 1378
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 5 cut(s) 126, 897, 907, 1198, 1602
DpnI GATC 6 cut(s) 454, 1063, 1179, 1401, 1488, 1611
DpnII GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
DraI TTTAAA 2 cut(s) 817, 1275
EaeI YGGCCR 2 cut(s) 683, 1281
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 3 cut(s) 345, 472, 1583
Eco24I GRGCYC 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 1261
Eco47I GGWCC 4 cut(s) 326, 513, 563, 1247
Eco53kI GAGCTC 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 603
EcoO109I RGGNCCY 2 cut(s) 513, 701
EcoO65I GGTNACC 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 1546
EcoRII CCWGG 6 cut(s) 4, 199, 241, 412, 808, 1252
EcoT14I CCWWGG 3 cut(s) 345, 472, 1583
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 3 cut(s) 345, 472, 1583
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 2 cut(s) 499, 1099
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 264, 1112, 1115, 1749
FokI GGATG 2 cut(s) 767, 1492
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 4 cut(s) 264, 1112, 1115, 1749
GluI GCNGC 4 cut(s) 264, 1112, 1115, 1749
GsuI CTGGAG 2 cut(s) 579, 1422
HaeIII GGCC 4 cut(s) 306, 685, 702, 1283
HapII CCGG 5 cut(s) 291, 682, 800, 1068, 1379
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 4 cut(s) 57, 162, 247, 481
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 5 cut(s) 291, 682, 800, 1068, 1379
HphI GGTGA 2 cut(s) 1368, 1619
Hpy166II GTNNAC 7 cut(s) 89, 329, 566, 1023, 1106, 1168, 1247
Hpy188I TCNGA 4 cut(s) 832, 1053, 1201, 1591
Hpy188III TCNNGA 6 cut(s) 21, 159, 1175, 1439, 1490, 1613
Hpy8I GTNNAC 7 cut(s) 89, 329, 566, 1023, 1106, 1168, 1247
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 7 cut(s) 278, 469, 641, 880, 1291, 1356, 1761
HpyCH4IV ACGT 1 cut(s) 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 898, 1324, 1426
HpyF3I CTNAG 5 cut(s) 126, 897, 907, 1198, 1602
HpySE526I ACGT 1 cut(s) 582
KflI GGGWCCC 1 cut(s) 513
KroI GCCGGC 1 cut(s) 681
KroNI GCCGGC 1 cut(s) 683
KspAI GTTAAC 1 cut(s) 1023
Kzo9I GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
LmnI GCTCC 2 cut(s) 1132, 1441
Lsp1109I GCAGC 4 cut(s) 250, 1123, 1126, 1735
LweI GCATC 2 cut(s) 789, 879
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 163, 272, 1350, 1374
MalI GATC 6 cut(s) 454, 1063, 1179, 1401, 1488, 1611
MboI GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
MboII GAAGA 4 cut(s) 101, 803, 1071, 1172
MfeI CAATTG 2 cut(s) 267, 713
MflI RGATCY 3 cut(s) 452, 1061, 1177
MhlI GDGCHC 1 cut(s) 605
MlyI GAGTC 2 cut(s) 66, 171
MmeI TCCRAC 2 cut(s) 85, 172
MroNI GCCGGC 1 cut(s) 681
MroXI GAANNNNTTC 3 cut(s) 79, 662, 795
MslI CAYNNNNRTG 1 cut(s) 1191
MspI CCGG 5 cut(s) 291, 682, 800, 1068, 1379
MspR9I CCNGG 7 cut(s) 6, 201, 243, 291, 414, 810, 1254
MunI CAATTG 2 cut(s) 267, 713
Mva1269I GAATGC 1 cut(s) 1219
MvaI CCWGG 6 cut(s) 6, 201, 243, 414, 810, 1254
MwoI GCNNNNNNNGC 3 cut(s) 898, 1324, 1426
NaeI GCCGGC 1 cut(s) 683
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 2 cut(s) 345, 1583
NdeII GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
NgoMIV GCCGGC 1 cut(s) 681
NlaIV GGNNCC 4 cut(s) 411, 514, 515, 1579
NmuCI GTSAC 3 cut(s) 163, 1350, 1374
NspI RCATGY 3 cut(s) 1127, 1723, 1748
PaeI GCATGC 1 cut(s) 1723
PaqCI CACCTGC 1 cut(s) 1663
PctI GAATGC 1 cut(s) 1219
PdiI GCCGGC 1 cut(s) 683
PdmI GAANNNNTTC 3 cut(s) 79, 662, 795
PfeI GAWTC 2 cut(s) 247, 481
PflMI CCANNNNNTGG 2 cut(s) 313, 557
PfoI TCCNGGA 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 1378
PkrI GCNGC 4 cut(s) 265, 1113, 1116, 1750
PleI GAGTC 2 cut(s) 65, 170
PpsI GAGTC 2 cut(s) 65, 170
PpuMI RGGWCCY 1 cut(s) 513
PsiI TTATAA 1 cut(s) 1475
Psp124BI GAGCTC 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 6 cut(s) 4, 199, 241, 412, 808, 1252
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 6 cut(s) 4, 199, 241, 412, 808, 1252
PspN4I GGNNCC 4 cut(s) 411, 514, 515, 1579
PspPI GGNCC 5 cut(s) 326, 513, 563, 701, 1247
PspPPI RGGWCCY 1 cut(s) 513
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 1295
PsuI RGATCY 3 cut(s) 452, 1061, 1177
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 1191
SacI GAGCTC 1 cut(s) 605
SatI GCNGC 4 cut(s) 264, 1112, 1115, 1749
Sau3AI GATC 6 cut(s) 452, 1061, 1177, 1399, 1486, 1609
Sau96I GGNCC 5 cut(s) 326, 513, 563, 701, 1247
SchI GAGTC 2 cut(s) 66, 171
ScrFI CCNGG 7 cut(s) 6, 201, 243, 291, 414, 810, 1254
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 2 cut(s) 789, 879
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 4 cut(s) 326, 513, 563, 1247
SmiMI CAYNNNNRTG 1 cut(s) 1191
SmlI CTYRAG 2 cut(s) 705, 1161
SmoI CTYRAG 2 cut(s) 705, 1161
SphI GCATGC 1 cut(s) 1723
SsiI CCGC 2 cut(s) 231, 518
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 7 cut(s) 4, 199, 241, 289, 412, 808, 1252
StyI CCWWGG 3 cut(s) 345, 472, 1583
TaaI ACNGT 7 cut(s) 278, 469, 641, 880, 1291, 1356, 1761
TaiI ACGT 1 cut(s) 585
TfiI GAWTC 2 cut(s) 247, 481
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 3 cut(s) 163, 1350, 1374
TseI GCWGC 4 cut(s) 263, 1111, 1114, 1748
Tsp45I GTSAC 3 cut(s) 163, 1350, 1374
TspDTI ATGAA 7 cut(s) 87, 671, 711, 804, 1026, 1083, 1746
TspRI CASTG 1 cut(s) 915
Van91I CCANNNNNTGG 2 cut(s) 313, 557
VpaK11BI GGWCC 4 cut(s) 326, 513, 563, 1247
XapI RAATTY 8 cut(s) 309, 433, 541, 628, 936, 1031, 1276, 1546
XceI RCATGY 3 cut(s) 1127, 1723, 1748
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 352
XmnI GAANNNNTTC 3 cut(s) 79, 662, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.