Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008670

Physical Location & Seq

Genomic Coordinates Reverse (-)

6786300 .. 6791784

Gene Structure 5485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08390.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGTTCGAAACCCTAAGGTACCTACCTTGCAATTCCCCCACAGATTGTAGGTCTTCTCTGAACGGATCAGCCTCAAATCTTCCAGACAATAGTGGGCGATTTGCGTCATCTTTCTCTGGTCAATCTGGTGCAGCTTCTCCTGTTTTTCATCACTCAGGAAGTATTCAGGGATTGCATAACATTCATGGGAGCTTCAGTGTTCCCAACATGCCAGGTACTTTAACATCAAGAAGTTCAACATTAAATAATGTGCCTTCCGGTGGAGTACAACAACCAACTGGAAGCCTCTCTGGCGGACGATTCACATCAAATAACCTTCCTGTTGCTTTGTCTCAGTTATCTCATGGAAGCTCCCATGGACATTCAGGAATCACTAATAGAGGAGGGTTGGGCGTGTCCCCAATTTTGGGAAATGCAGGTCCTCGGATTACAAGTTCCATGGGAAACATGGTTGGTGGGGGCAACATTGGGAGGAGTATTAGCTCTGGTGGAGGCTTGTCAGTGCCTGGTCTTGCTTCTCGTCTAAATTTAAGTGCAAATAGTGGATCTGGAAGCTTAACTGTCCAAGGGCAAAATCGCTTGATGAGTGGTGTGCTACCACAAGGGTCTCCGCAAGTAATTTCAATGCTTGGAAATTCTTATCCTAATCCTGGAGGTCCACTTTCTCAAAGCCATGTCCAAGTGAATAATTTGAGCTCTATGGGAATAATGAATGATGTGAATTCTAATGACAGTTCTCCTTTTGACATCAATGATTTCCCTTCATTAACAAGTCGTCCTAGTTCTGCGGGAGGGCCTCAGGGGCAATTGGGTTCACTACGAAAACAAGGCCTTGGCGTTAGTCCTATTGTTCAACAGAACCAAGAGTTCAGCATCCAAAATGAGGACTTTCCAGCTTTACCAGGATTTAAAGCAGGTGGTAATGCTGAATATGGGATTGATATGCACCAGAAAGAACAACTCCATGACAATGCTGTGTCGATGATGCAATCTCAGCACTTCTCAATGGGAAGGTCCTCAGGATTTAACTTGGGGGGAGCTTATTCTTCTCATAGGCCACAACAGCAGCAACAACATGCTCCATCAGTCAGCAGTAGTGGTGTCTCGTTTTCACAAGTAAACAATCAGGATTTTCTCCATATGCATGGTTCAGACATATTCCCATCATCACATTCAACATATCATTCACAGACTAATGGAGGACCTCCTGGCATTGGATTAAGACCTCTGAATTCTGCCAATTCAGTTTCTGGTATGGGTTCATATGACCAGCTTATTCAGCAGTATCAACAACAAAATCAATCCCAGTTTCGCCTGCAACAGATGTCAGCTGGAAATCAATCATTTAGGGATCAGGGAGTGAAATCAATGCAGTCAGCGCAATCTGCTCCAGACCTATTTGGTTTGCTTGGATTGTTAAGTGTCATAAGGATGAGCGATCCTCGATCTTACATCGCTTGCACTTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006355 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015074 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903506 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NOT2_3_5

Protein Analysis

491

Amino Acids

51.16

Weight (kDa)

8.85

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07705 AT1G07705
fragaria_vesca	FvH4_3g34620 FvH4_3g34620 FvH4_3g34620
malus_domestica	MD03G1103300.v1.1 MD11G1117100.v1.1
prunus_persica	Prupe.6G087300_v2.0.a1
pyrus_communis	pycom03g08390 pycom11g09830
rosa_chinensis	RchiOBHm_Chr5g0062331
rosa_laevigata	RLG00000035550
rosa_multiflora	Rmu_sc0006295.1_g000002 Rmu_ssc0000409.1_g000034
rosa_roxburghii	Rroxscaffold_1G00018350
rosa_rugosa	Rorug05G0348500 Rorug05G0348600 Rorug05G0348700
rosa_samantha	Rh5AG408400 Rh5BG422100 Rh5CG446100 Rh5DG437100
rosa_wichuraiana	Rw5G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	905
Acc36I	ACCTGC	2 cut(s)	407, 905
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	18
AciI	CCGC	3 cut(s)	294, 611, 788
AclWI	GGATC	4 cut(s)	73, 553, 1359, 1433
AcsI	RAATTY	4 cut(s)	526, 634, 721, 1231
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	20, 217, 267
AfiI	CCNNNNNNNGG	6 cut(s)	260, 406, 407, 650, 883, 1214
AgsI	TTSAA	4 cut(s)	237, 624, 854, 1176
AjnI	CCWGG	5 cut(s)	211, 505, 649, 901, 1207
AloI	GAACNNNNNNTCC	2 cut(s)	418, 450
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	3 cut(s)	336, 612, 1108
AlwI	GGATC	4 cut(s)	73, 553, 1359, 1433
AlwNI	CAGNNNCTG	2 cut(s)	506, 1250
AoxI	GGCC	3 cut(s)	794, 829, 1055
ApeKI	GCWGC	2 cut(s)	131, 1066
ApoI	RAATTY	4 cut(s)	526, 634, 721, 1231
Asp718I	GGTACC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	1381
AspS9I	GGNCC	5 cut(s)	419, 656, 794, 1014, 1202
AsuII	TTCGAA	1 cut(s)	6
AvaII	GGWCC	4 cut(s)	419, 656, 1014, 1202
AxyI	CCTNAGG	3 cut(s)	14, 798, 1018
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	143, 1078
BccI	CCATC	2 cut(s)	1090, 1171
BciT130I	CCWGG	5 cut(s)	213, 507, 651, 903, 1209
BcoDI	GTCTC	3 cut(s)	336, 612, 1108
BfaI	CTAG	1 cut(s)	780
BfuAI	ACCTGC	2 cut(s)	407, 905
BglI	GCCNNNNNGGC	2 cut(s)	291, 802
BisI	GCNGC	2 cut(s)	132, 1067
BlsI	GCNGC	2 cut(s)	133, 1068
Bme1390I	CCNGG	5 cut(s)	213, 507, 651, 903, 1209
Bme18I	GGWCC	4 cut(s)	419, 656, 1014, 1202
BmgT120I	GGNCC	5 cut(s)	419, 656, 794, 1014, 1202
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	5 cut(s)	213, 507, 651, 903, 1209
BmrI	ACTGGG	1 cut(s)	1300
BmsI	GCATC	2 cut(s)	882, 975
BmuI	ACTGGG	1 cut(s)	1300
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	1426, 1458
BpmI	CTGGAG	2 cut(s)	672, 1374
Bpu14I	TTCGAA	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	304
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	5 cut(s)	355, 422, 438, 565, 832
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 406, 407, 650, 883, 1214
Bse1I	ACTGG	2 cut(s)	283, 1306
Bse21I	CCTNAGG	3 cut(s)	14, 798, 1018
Bse8I	GATNNNNATC	1 cut(s)	304
BseBI	CCWGG	5 cut(s)	213, 507, 651, 903, 1209
BseDI	CCNNGG	5 cut(s)	355, 422, 438, 565, 832
BseGI	GGATG	2 cut(s)	873, 1437
BseJI	GATNNNNATC	1 cut(s)	304
BseLI	CCNNNNNNNGG	6 cut(s)	260, 406, 407, 650, 883, 1214
BseMII	CTCAG	5 cut(s)	168, 347, 812, 1007, 1032
BseNI	ACTGG	2 cut(s)	283, 1306
BseRI	GAGGAG	2 cut(s)	396, 487
BseXI	GCAGC	2 cut(s)	143, 1078
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	796, 831, 1057
BshNI	GGYRCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	6 cut(s)	260, 406, 407, 650, 883, 1214
BsmAI	GTCTC	3 cut(s)	336, 612, 1108
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	796, 831, 1057
Bso31I	GGTCTC	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
Bsp19I	CCATGG	2 cut(s)	355, 438
BspACI	CCGC	3 cut(s)	294, 611, 788
BspANI	GGCC	3 cut(s)	796, 831, 1057
BspCNI	CTCAG	5 cut(s)	167, 346, 811, 1006, 1031
BspLI	GGNNCC	1 cut(s)	20
BspMI	ACCTGC	2 cut(s)	407, 905
BspPI	GGATC	4 cut(s)	73, 553, 1359, 1433
BspT104I	TTCGAA	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	283, 1306
BssECI	CCNNGG	5 cut(s)	355, 422, 438, 565, 832
BssMI	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
BssT1I	CCWWGG	4 cut(s)	355, 438, 565, 832
Bst2UI	CCWGG	5 cut(s)	213, 507, 651, 903, 1209
Bst4CI	ACNGT	2 cut(s)	562, 734
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	1316, 1459
BstDEI	CTNAG	6 cut(s)	14, 154, 333, 798, 993, 1018
BstDSI	CCRYGG	2 cut(s)	355, 438
BstF5I	GGATG	2 cut(s)	873, 1437
BstHHI	GCGC	1 cut(s)	1381
BstKTI	GATC	5 cut(s)	68, 548, 1354, 1441, 1448
BstMAI	GTCTC	3 cut(s)	336, 612, 1108
BstMBI	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
BstMWI	GCNNNNNNNGC	7 cut(s)	291, 802, 994, 1063, 1279, 1378, 1385
BstNI	CCWGG	5 cut(s)	213, 507, 651, 903, 1209
BstNSI	RCATGY	2 cut(s)	211, 1079
BstSCI	CCNGG	5 cut(s)	211, 505, 649, 901, 1207
BstV1I	GCAGC	2 cut(s)	143, 1078
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	545
Bsu36I	CCTNAGG	3 cut(s)	14, 798, 1018
BsuRI	GGCC	3 cut(s)	796, 831, 1057
BtgI	CCRYGG	2 cut(s)	355, 438
BtgZI	GCGATG	1 cut(s)	1438
BtsCI	GGATG	2 cut(s)	873, 1437
BtsIMutI	CAGTG	2 cut(s)	202, 507
BveI	ACCTGC	2 cut(s)	407, 905
Cac8I	GCNNGC	2 cut(s)	1316, 1459
CaiI	CAGNNNCTG	2 cut(s)	506, 1250
CfoI	GCGC	1 cut(s)	1381
Cfr13I	GGNCC	5 cut(s)	419, 656, 794, 1014, 1202
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	19, 216, 266
CviQI	GTAC	3 cut(s)	19, 216, 266
DdeI	CTNAG	6 cut(s)	14, 154, 333, 798, 993, 1018
DpnI	GATC	5 cut(s)	67, 547, 1353, 1440, 1447
DpnII	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
DraI	TTTAAA	1 cut(s)	910
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	696
Eco130I	CCWWGG	4 cut(s)	355, 438, 565, 832
Eco147I	AGGCCT	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	4 cut(s)	419, 656, 1014, 1202
Eco53kI	GAGCTC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	3 cut(s)	14, 798, 1018
EcoICRI	GAGCTC	1 cut(s)	696
EcoO109I	RGGNCCY	4 cut(s)	419, 794, 1014, 1202
EcoRI	GAATTC	2 cut(s)	721, 1231
EcoRII	CCWGG	5 cut(s)	211, 505, 649, 901, 1207
EcoT14I	CCWWGG	4 cut(s)	355, 438, 565, 832
EcoT22I	ATGCAT	1 cut(s)	1146
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	4 cut(s)	355, 438, 565, 832
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	1 cut(s)	781
FauNDI	CATATG	2 cut(s)	1140, 1264
Fnu4HI	GCNGC	2 cut(s)	132, 1067
FokI	GGATG	2 cut(s)	860, 1444
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	132, 1067
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	1380
GluI	GCNGC	2 cut(s)	132, 1067
GsuI	CTGGAG	2 cut(s)	672, 1374
HaeIII	GGCC	3 cut(s)	796, 831, 1057
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	1381
Hin6I	GCGC	1 cut(s)	1379
HinP1I	GCGC	1 cut(s)	1379
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	2 cut(s)	300, 369
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	659, 815, 1120
Hpy188I	TCNGA	4 cut(s)	60, 426, 1153, 1230
Hpy188III	TCNNGA	8 cut(s)	83, 156, 228, 366, 549, 1020, 1127, 1391
Hpy8I	GTNNAC	3 cut(s)	659, 815, 1120
HpyAV	CCTTC	4 cut(s)	264, 326, 771, 1005
HpyCH4III	ACNGT	2 cut(s)	562, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	291, 802, 994, 1063, 1279, 1378, 1385
HpyF3I	CTNAG	6 cut(s)	14, 154, 333, 798, 993, 1018
HspAI	GCGC	1 cut(s)	1379
KpnI	GGTACC	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
LmnI	GCTCC	5 cut(s)	189, 356, 1037, 1084, 1393
Lsp1109I	GCAGC	2 cut(s)	143, 1078
LweI	GCATC	2 cut(s)	882, 975
MaeI	CTAG	1 cut(s)	780
MalI	GATC	5 cut(s)	67, 547, 1353, 1440, 1447
MboI	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
MboII	GAAGA	3 cut(s)	45, 71, 1038
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	698
Mph1103I	ATGCAT	1 cut(s)	1146
MseI	TTAA	9 cut(s)	221, 242, 530, 557, 767, 909, 1026, 1220, 1418
MslI	CAYNNNNRTG	3 cut(s)	969, 1143, 1430
MspA1I	CMGCKG	1 cut(s)	1331
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	5 cut(s)	213, 507, 651, 903, 1209
MunI	CAATTG	1 cut(s)	806
MvaI	CCWGG	5 cut(s)	213, 507, 651, 903, 1209
MwoI	GCNNNNNNNGC	7 cut(s)	291, 802, 994, 1063, 1279, 1378, 1385
NcoI	CCATGG	2 cut(s)	355, 438
NdeI	CATATG	2 cut(s)	1140, 1264
NdeII	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
NlaIV	GGNNCC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	1146
NspI	RCATGY	2 cut(s)	211, 1079
NspV	TTCGAA	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	905
PceI	AGGCCT	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	300, 369
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	133, 1068
PpuMI	RGGWCCY	3 cut(s)	419, 1014, 1202
Psp124BI	GAGCTC	1 cut(s)	698
Psp5II	RGGWCCY	3 cut(s)	419, 1014, 1202
Psp6I	CCWGG	5 cut(s)	211, 505, 649, 901, 1207
PspGI	CCWGG	5 cut(s)	211, 505, 649, 901, 1207
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	5 cut(s)	419, 656, 794, 1014, 1202
PspPPI	RGGWCCY	3 cut(s)	419, 1014, 1202
PstNI	CAGNNNCTG	2 cut(s)	506, 1250
PsuI	RGATCY	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	1331
RsaI	GTAC	3 cut(s)	20, 217, 267
RsaNI	GTAC	3 cut(s)	19, 216, 266
RseI	CAYNNNNRTG	3 cut(s)	969, 1143, 1430
SacI	GAGCTC	1 cut(s)	698
SaqAI	TTAA	9 cut(s)	221, 242, 530, 557, 767, 909, 1026, 1220, 1418
SatI	GCNGC	2 cut(s)	132, 1067
Sau3AI	GATC	5 cut(s)	65, 545, 1351, 1438, 1445
Sau96I	GGNCC	5 cut(s)	419, 656, 794, 1014, 1202
ScrFI	CCNGG	5 cut(s)	213, 507, 651, 903, 1209
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	2 cut(s)	882, 975
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	4 cut(s)	419, 656, 1014, 1202
SmiMI	CAYNNNNRTG	3 cut(s)	969, 1143, 1430
SseBI	AGGCCT	1 cut(s)	831
SsiI	CCGC	3 cut(s)	294, 611, 788
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	698
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	5 cut(s)	211, 505, 649, 901, 1207
StyI	CCWWGG	4 cut(s)	355, 438, 565, 832
TaaI	ACNGT	2 cut(s)	562, 734
TaqI	TCGA	3 cut(s)	6, 980, 1444
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	300, 369
Tru1I	TTAA	9 cut(s)	221, 242, 530, 557, 767, 909, 1026, 1220, 1418
Tru9I	TTAA	9 cut(s)	221, 242, 530, 557, 767, 909, 1026, 1220, 1418
TscAI	CASTG	2 cut(s)	202, 507
TseI	GCWGC	2 cut(s)	131, 1066
TspDTI	ATGAA	5 cut(s)	137, 173, 725, 753, 1251
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	202, 507
VpaK11BI	GGWCC	4 cut(s)	419, 656, 1014, 1202
XapI	RAATTY	4 cut(s)	526, 634, 721, 1231
XceI	RCATGY	2 cut(s)	211, 1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.