Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009671

Physical Location & Seq

Genomic Coordinates Forward (+)

6109489 .. 6111237

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCTTTCCAATAAGAATGAGACACCTGCCCCAAAACAAATATATTGTAGAAAAATAAATATTCAATCTATAACTTACTTTTATAAGTACCTCGCTCAAGGTTCCACAACTGCCTCTCAGAAGTACAGAACTTCAATATTCCCACTTTCAGTAGCCATGACCACGTTTAAGCTGCTCATGTTTCTTTCTCTTCAAATGTTCTTCACAACAATGTCATCAATCCAAGCAGCAAATTCAAAGCTCTTCAGAGAATACATCGGAGCTGAGAACAACGGCGTCACTTTCGAAGAAGTGCCCGTTGATTCCAAAGTTGAATTTCACTTCATTCTCTCCTTTGCTATTGACTATACACAATCCAATCATCCTACACCCACTAATGGCAACTTTAATGTCTTCTGGGACACACAGAATCTTACCCCTGCTCATGTATCCGCCATTAAGGCTCGTCATCAAAATGCTAAAGTAGCTCTGAGTCTTGGAGGTGATACCGTAAGCAACAAATATGCATACTTCAGTCCTACATCAATCAATTCTTGGGTTAGAAATGCTATCAACTCCATAGTTCAGATAACGGAAAAATATCATTTGGATGGAATTGATATTGACTATGAACACTTCCAGACAGATCCCAATACATTTGCTGAATGCATTGGGCGACTACTCTTCTACCTTAAACAAAACAATATTGTGTCGTTCACATCAATAGCACCATATGAGAATGATGCAGTGCAACCATATTACTTGGCATTGTGGAGGAAGTATGGGCATCTCATTGACTATGTTAATTTTCAGTTCTATGCCTATGATAAAGGCACGACTATAAATCAGTTTTTAAAACATTTTGAGATCCAGAGCTCAAATTACAAAGGTGGAAAGATTCTAGTGAGCTTTGGAACAGATGGAAGTGGGGGGTTGTCCCCTGAACATGGGTTCTTTGAGGCTTGTGCTAGGCTTCAACGTCAGGGCAAACTTCATGGCATTTTTATTTGGTCTGCCGATGACTCCAAGAAGGCTCATTTTCGTTATGAGAAGCAATCACAGACCTTTCTGGCTAGCATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

355

Amino Acids

40.41

Weight (kDa)

8.83

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34301 FvH4_3g34320
malus_domestica	MD11G1119200.v1.1
prunus_persica	Prupe.6G089400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061901
rosa_laevigata	RLG00000035513 RLG00000035515
rosa_multiflora	Rmu_sc0011641.1_g000008 Rmu_sc0011641.1_g000010 Rmu_sc0019271.1_g000003 Rmu_sc0019271.1_g000004
rosa_rugosa	Rorug05G0345000
rosa_samantha	Rh5AG405800 Rh5BG418500 Rh5BG418800 Rh5CG443000 Rh5CG443200 Rh5DG432600 Rh5DG432800
rosa_wichuraiana	Rw5G038090 Rw5G038240 Rw5G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	620, 841
AcsI	RAATTY	2 cut(s)	232, 314
AcuI	CTGAAG	2 cut(s)	229, 496
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	89, 125
AfiI	CCNNNNNNNGG	2 cut(s)	377, 926
AgsI	TTSAA	6 cut(s)	65, 135, 194, 237, 314, 956
AluBI	AGCT	6 cut(s)	172, 241, 263, 467, 855, 888
AluI	AGCT	6 cut(s)	172, 241, 263, 467, 855, 888
Alw21I	GWGCWC	1 cut(s)	857
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	620, 841
ApeKI	GCWGC	2 cut(s)	172, 227
ApoI	RAATTY	2 cut(s)	232, 314
AsuHPI	GGTGA	1 cut(s)	494
AsuII	TTCGAA	1 cut(s)	285
AsuNHI	GCTAGC	1 cut(s)	1052
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	857
BbvI	GCAGC	2 cut(s)	159, 239
BccI	CCATC	2 cut(s)	584, 893
BceAI	ACGGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	3 cut(s)	881, 948, 1053
BfuAI	ACCTGC	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	173, 228
BlsI	GCNGC	2 cut(s)	174, 229
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	2 cut(s)	712, 775
BmtI	GCTAGC	1 cut(s)	1056
BpiI	GAAGAC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 926
BseGI	GGATG	2 cut(s)	361, 595
BseLI	CCNNNNNNNGG	2 cut(s)	377, 926
BseMII	CTCAG	3 cut(s)	131, 255, 461
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	159, 239
BsiHKAI	GWGCWC	1 cut(s)	857
BslFI	GGGAC	2 cut(s)	413, 901
BslI	CCNNNNNNNGG	2 cut(s)	377, 926
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	413, 901
BsmI	GAATGC	1 cut(s)	650
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	297, 857
Bsp143I	GATC	2 cut(s)	625, 846
BspACI	CCGC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	130, 256, 462
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	34
BspOI	GCTAGC	1 cut(s)	1056
BspPI	GGATC	2 cut(s)	620, 841
BspQI	GCTCTTC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	285
BssMI	GATC	2 cut(s)	625, 846
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	3 cut(s)	195, 248, 668
BstACI	GRCGYC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	1054
BstDEI	CTNAG	3 cut(s)	117, 264, 470
BstF5I	GGATG	2 cut(s)	361, 595
BstKTI	GATC	2 cut(s)	628, 849
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	625, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 464
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	159, 239
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	625, 846
BstYI	RGATCY	2 cut(s)	625, 846
BsuI	GTATCC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	361, 595
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	732
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	1054
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	88, 124
CviAII	CATG	5 cut(s)	157, 178, 425, 926, 974
CviQI	GTAC	2 cut(s)	88, 124
DdeI	CTNAG	3 cut(s)	117, 264, 470
DpnI	GATC	2 cut(s)	627, 848
DpnII	GATC	2 cut(s)	625, 846
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	3 cut(s)	195, 248, 668
EarI	CTCTTC	3 cut(s)	195, 248, 668
EciI	GGCGGA	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	855
Eco57I	CTGAAG	2 cut(s)	229, 496
EcoICRI	GAGCTC	1 cut(s)	855
EcoT22I	ATGCAT	2 cut(s)	508, 650
EcoT38I	GRGCYC	1 cut(s)	857
FaeI	CATG	5 cut(s)	160, 181, 428, 929, 977
FaqI	GGGAC	2 cut(s)	413, 901
FatI	CATG	5 cut(s)	156, 177, 424, 925, 973
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	173, 228
FokI	GGATG	2 cut(s)	348, 602
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	2 cut(s)	173, 228
FspBI	CTAG	3 cut(s)	881, 948, 1053
GluI	GCNGC	2 cut(s)	173, 228
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	160, 181, 428, 929, 977
HinfI	GANTC	5 cut(s)	302, 409, 472, 877, 1001
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	5 cut(s)	120, 248, 260, 471, 567
Hpy188III	TCNNGA	2 cut(s)	619, 850
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	1 cut(s)	1003
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	164, 958
HpyCH4V	TGCA	4 cut(s)	506, 648, 725, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 464
HpyF3I	CTNAG	3 cut(s)	117, 264, 470
HpySE526I	ACGT	2 cut(s)	164, 958
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	160, 181, 428, 929, 977
Kzo9I	GATC	2 cut(s)	625, 846
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	8 cut(s)	39, 382, 432, 632, 863, 933, 947, 1034
Lsp1109I	GCAGC	2 cut(s)	159, 239
LweI	GCATC	2 cut(s)	712, 775
MaeI	CTAG	3 cut(s)	881, 948, 1053
MaeII	ACGT	2 cut(s)	164, 958
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	627, 848
MboI	GATC	2 cut(s)	625, 846
MboII	GAAGA	6 cut(s)	182, 193, 235, 299, 385, 655
MflI	RGATCY	2 cut(s)	625, 846
MhlI	GDGCHC	2 cut(s)	297, 857
MluCI	AATT	6 cut(s)	232, 314, 529, 594, 784, 859
MlyI	GAGTC	2 cut(s)	481, 995
MnlI	CCTC	5 cut(s)	101, 124, 473, 747, 931
Mph1103I	ATGCAT	2 cut(s)	508, 650
MseI	TTAA	6 cut(s)	168, 387, 438, 672, 783, 833
MslI	CAYNNNNRTG	3 cut(s)	209, 453, 588
Mva1269I	GAATGC	1 cut(s)	650
MwoI	GCNNNNNNNGC	2 cut(s)	440, 464
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	2 cut(s)	625, 846
NheI	GCTAGC	1 cut(s)	1052
NlaIII	CATG	5 cut(s)	160, 181, 428, 929, 977
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	2 cut(s)	508, 650
NspV	TTCGAA	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	302, 409, 877
PkrI	GCNGC	2 cut(s)	174, 229
PleI	GAGTC	2 cut(s)	480, 995
PpsI	GAGTC	2 cut(s)	480, 995
PsiI	TTATAA	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	625, 846
RsaI	GTAC	2 cut(s)	89, 125
RsaNI	GTAC	2 cut(s)	88, 124
RseI	CAYNNNNRTG	3 cut(s)	209, 453, 588
SacI	GAGCTC	1 cut(s)	857
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	6 cut(s)	168, 387, 438, 672, 783, 833
SatI	GCNGC	2 cut(s)	173, 228
Sau3AI	GATC	2 cut(s)	625, 846
SchI	GAGTC	2 cut(s)	481, 995
SduI	GDGCHC	2 cut(s)	297, 857
SfaNI	GCATC	2 cut(s)	712, 775
SfuI	TTCGAA	1 cut(s)	285
SmiMI	CAYNNNNRTG	3 cut(s)	209, 453, 588
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	6 cut(s)	232, 314, 529, 594, 784, 859
SsiI	CCGC	1 cut(s)	432
SspI	AATATT	3 cut(s)	61, 138, 685
SspMI	CTAG	3 cut(s)	881, 948, 1053
SstI	GAGCTC	1 cut(s)	857
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	167, 961
TaqI	TCGA	1 cut(s)	285
TasI	AATT	6 cut(s)	232, 314, 529, 594, 784, 859
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	302, 409, 877
Tru1I	TTAA	6 cut(s)	168, 387, 438, 672, 783, 833
Tru9I	TTAA	6 cut(s)	168, 387, 438, 672, 783, 833
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	172, 227
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	313, 624, 962
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	732
XapI	RAATTY	2 cut(s)	232, 314
XspI	CTAG	3 cut(s)	881, 948, 1053
Zsp2I	ATGCAT	2 cut(s)	508, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.