Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009671

Physical Location & Seq

Genomic Coordinates Reverse (-)

67817361 .. 67818286

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG418800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAATAGCCGAAGCAGCCCCAGCAAACTCGAAGCTCTTCAGGGAATACATAGGAGCCGAGGGCGTCGGTGTCACATTCTCTGATGTACCAATTGATTCCCGAGTCGAGTTTCACTTCATCCTTTCCTTTGCTATTGACTACACAACATCTTCCCGTCCTAAACCCACCAATGGCAACTTCAATGTGTTCTGGGACACAGAGAATCTCAGCCCTTCTCATGTTTCCGCCATTAAGGCCCGTCATCGAAATGCTAAAGTAGCTCTGAGTCTTGGAGGAGATACCGTAGCTGGTAAACCTGCTAACTTCACTCCTACATCAATCAATTCTTGGGTCAGAAATGCTATCGCTTCGATAGTTCAGATAACGAAAGAATACAATTTGGATGGAATCGATATAGACTATGAACACTTCAACACGGATCCCAATACGTTTGCTGAATGCATTGGGCGACTATTCTTCTACCTTAAACAAAATAAGGTTGTGTCCTTCACATCAATAGCACCATATGACAATGATTCTGTGCAACCATATTACTTGGCATTGTGGAGGAAGTATGGGAATCTCATTGACTATGTTAACTTTCAGTTCTATGCCTATGATAAGGGCACAACTATTACTCAGTTCATGAAATATTTTGGGACTCAGAGCTCAAATTACAAAGGTGGCAAGGTTCTAGTGAGCTTTGGAACGGACAACAGTGGGGGTTTGTCTCCTGAAAATGGGTTCTTTGAGGCTTGTGCTAGGCTTAAAAATCAGGGCAAGCTTCATGGCATTTTTATTTGGTCTGCAGACGACTCCAAGAAGGCTCACTTTCGTTATGAGAAGCAATCACAAAGCCTTCTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

284

Amino Acids

31.78

Weight (kDa)

7.72

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	63 - 202	1.4e-13	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	63 - 212	1.8e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34301 FvH4_3g34320
malus_domestica	MD11G1119200.v1.1
prunus_persica	Prupe.6G089400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061901
rosa_laevigata	RLG00000035513 RLG00000035515
rosa_multiflora	Rmu_sc0011641.1_g000008 Rmu_sc0011641.1_g000010 Rmu_sc0019271.1_g000003 Rmu_sc0019271.1_g000004
rosa_rugosa	Rorug05G0345000
rosa_samantha	Rh5AG405800 Rh5BG418500 Rh5BG418800 Rh5CG443000 Rh5CG443200 Rh5DG432600 Rh5DG432800
rosa_wichuraiana	Rw5G038090 Rw5G038240 Rw5G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	416, 429
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	173, 722
AgsI	TTSAA	2 cut(s)	184, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	6 cut(s)	37, 263, 290, 651, 684, 766
AluI	AGCT	6 cut(s)	37, 263, 290, 651, 684, 766
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	416, 429
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	2 cut(s)	677, 744
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	58, 423
Bsa29I	ATCGAT	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 722
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	120, 391
BseLI	CCNNNNNNNGG	2 cut(s)	173, 722
BseMII	CTCAG	4 cut(s)	223, 257, 635, 659
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	209, 655
BslI	CCNNNNNNNGG	2 cut(s)	173, 722
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	2 cut(s)	209, 655
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	611, 653
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	4 cut(s)	222, 258, 634, 658
BspDI	ATCGAT	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	58, 423
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	416, 429
BspQI	GCTCTTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	421
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	286, 701
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	764
BstDEI	CTNAG	4 cut(s)	209, 266, 621, 645
BstF5I	GGATG	2 cut(s)	120, 391
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 23, 236, 260
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	120, 391
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	764
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	221, 628, 770
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	209, 266, 621, 645
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	653
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	653
FaeI	CATG	3 cut(s)	224, 631, 773
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	209, 655
FatI	CATG	3 cut(s)	220, 627, 769
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	107, 398
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	677, 744
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	224, 631, 773
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	9 cut(s)	98, 105, 205, 268, 390, 518, 562, 643, 797
HpaI	GTTAAC	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	296, 580
Hpy188I	TCNGA	5 cut(s)	85, 267, 338, 363, 648
Hpy188III	TCNNGA	3 cut(s)	102, 628, 716
Hpy8I	GTNNAC	2 cut(s)	296, 580
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	225, 499, 799, 851
HpyCH4III	ACNGT	2 cut(s)	286, 701
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	444, 526, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 23, 236, 260
HpyF3I	CTNAG	4 cut(s)	209, 266, 621, 645
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	224, 631, 773
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	421
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	28, 36, 178, 276, 312, 729, 743
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	677, 744
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	31, 144, 451
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	611, 653
MluCI	AATT	4 cut(s)	93, 325, 379, 655
MlyI	GAGTC	4 cut(s)	114, 277, 637, 791
MnlI	CCTC	4 cut(s)	55, 269, 543, 727
Mph1103I	ATGCAT	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	4 cut(s)	234, 468, 579, 750
MslI	CAYNNNNRTG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	17, 23, 236, 260
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	224, 631, 773
NlaIV	GGNNCC	2 cut(s)	58, 423
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	446
PagI	TCATGA	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	5 cut(s)	98, 205, 390, 518, 562
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	4 cut(s)	113, 276, 637, 791
PpsI	GAGTC	4 cut(s)	113, 276, 637, 791
Psp124BI	GAGCTC	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	58, 423
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	234, 468, 579, 750
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	4 cut(s)	114, 277, 637, 791
SduI	GDGCHC	2 cut(s)	611, 653
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	4 cut(s)	93, 325, 379, 655
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	2 cut(s)	677, 744
SstI	GAGCTC	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	286, 701
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	5 cut(s)	32, 108, 247, 353, 393
TasI	AATT	4 cut(s)	93, 325, 379, 655
TfiI	GAWTC	5 cut(s)	98, 205, 390, 518, 562
Tru1I	TTAA	4 cut(s)	234, 468, 579, 750
Tru9I	TTAA	4 cut(s)	234, 468, 579, 750
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	109, 420, 616, 644, 758
TspGWI	ACGGA	2 cut(s)	434, 707
TspRI	CASTG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	677, 744
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.