Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009671

Physical Location & Seq

Genomic Coordinates Reverse (-)

67503077 .. 67504006

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACATTGTTCTTCACAATACTGTCATCAGCCCAAGCAGCCCCAACAAACTCGAAGCTCTTCAGGGAATACATAGGAGCAGAGGACACCGGTGTCACATTCTCAGATGTACCAATAGATTCCGGAGTCGAGTTTCACTTCATCCTCTCCTTTGCTATTGACTACACAGCATCTTCCCATCCAAAACTGGCCAATGGCACCTTTAACTTCACAACATCTTCCCATCCAAAACCCACCAATGGCAACTTTAATGCCAATCATCCAAATGCTAAAGTTGCTCTGAGTCTTGGAGGAGATAACGTAACCGGTAAACAGTATGCATACTTCAGTCCTACATCAATCAATTCTTGGGTCAGAAATGCTGTCACTTCAATATATGAACACTTCGAGACAGATCCCAATACATTTGCTGAATGCATTGGGCAACTATTATTCCACCTTAAACATAATAATGTGGTATCCTTCACATCAATTGCACCGTATGACAATGATTCTGTGCAACCATATTACTTGGCATTGTGGAAGAAGTATGGGCACCTGATTGACTATGTTAACTTTCAGTTTTATGCCTACAATAAGAGCACAACAATAACTCAGTTTATGGAACATTTTGAGACCCAGAGCTCAAATTACAAAGGTGGCAAGATTCTGGTGAGCATTGGAACAGATAAAAGTGGGGGTTTTCAGGGCAAACTTCATGGCATTTTTATTTGGTCCGCAGATGACTCCAAGAAGGATGATTTTCATTATGAAAAGCAATCACAAAGCTTTCTTGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

6.09

Isoelectric Point (pI)

25.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34301 FvH4_3g34320
malus_domestica	MD11G1119200.v1.1
prunus_persica	Prupe.6G089400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061901
rosa_laevigata	RLG00000035513 RLG00000035515
rosa_multiflora	Rmu_sc0011641.1_g000008 Rmu_sc0011641.1_g000010 Rmu_sc0019271.1_g000003 Rmu_sc0019271.1_g000004
rosa_rugosa	Rorug05G0345000
rosa_samantha	Rh5AG405800 Rh5BG418500 Rh5BG418800 Rh5CG443000 Rh5CG443200 Rh5DG432600 Rh5DG432800
rosa_wichuraiana	Rw5G038090 Rw5G038240 Rw5G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB1I	GGYRCC	2 cut(s)	197, 534
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	1 cut(s)	717
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	2 cut(s)	46, 310
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgeI	ACCGGT	2 cut(s)	89, 305
AgsI	TTSAA	1 cut(s)	372
AluBI	AGCT	4 cut(s)	58, 624, 768, 780
AluI	AGCT	4 cut(s)	58, 624, 768, 780
Alw21I	GWGCWC	2 cut(s)	584, 626
Alw26I	GTCTC	2 cut(s)	383, 608
AlwI	GGATC	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	38
AsiGI	ACCGGT	2 cut(s)	89, 305
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	714
AsuHPI	GGTGA	1 cut(s)	664
AsuNHI	GCTAGC	1 cut(s)	776
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	2 cut(s)	197, 534
BanII	GRGCYC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
Bbv12I	GWGCWC	2 cut(s)	584, 626
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	186, 231
BciVI	GTATCC	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	383, 608
BfaI	CTAG	1 cut(s)	777
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	714
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	2 cut(s)	199, 536
BmsI	GCATC	1 cut(s)	179
BmtI	GCTAGC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	608
BsaWI	WCCGGW	3 cut(s)	89, 122, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	2 cut(s)	89, 305
Bse1I	ACTGG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	122
BseGI	GGATG	5 cut(s)	141, 178, 223, 259, 742
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	117, 272, 608
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	2 cut(s)	197, 534
BshTI	ACCGGT	2 cut(s)	89, 305
BsiHKAI	GWGCWC	2 cut(s)	584, 626
BsiSI	CCGG	3 cut(s)	90, 123, 306
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	383, 608
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	3 cut(s)	537, 584, 626
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	1 cut(s)	717
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	116, 273, 607
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	199, 536
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	389
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	197, 534
BspTNI	GGTCTC	1 cut(s)	608
BsrFI	RCCGGY	2 cut(s)	89, 305
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	2 cut(s)	89, 305
BssMI	GATC	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	24, 315, 480
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	3 cut(s)	103, 281, 594
BstF5I	GGATG	5 cut(s)	141, 178, 223, 259, 742
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	2 cut(s)	383, 608
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 275
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	5 cut(s)	141, 178, 223, 259, 742
Cac8I	GCNNGC	1 cut(s)	778
Cfr10I	RCCGGY	2 cut(s)	89, 305
Cfr13I	GGNCC	1 cut(s)	714
Csp6I	GTAC	1 cut(s)	110
CspAI	ACCGGT	2 cut(s)	89, 305
CviAII	CATG	1 cut(s)	698
CviJI	RGCY	7 cut(s)	32, 41, 58, 191, 624, 768, 780
CviKI_1	RGCY	7 cut(s)	32, 41, 58, 191, 624, 768, 780
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	3 cut(s)	103, 281, 594
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	714
Eco53kI	GAGCTC	1 cut(s)	624
Eco57I	CTGAAG	2 cut(s)	46, 310
EcoICRI	GAGCTC	1 cut(s)	624
EcoT22I	ATGCAT	2 cut(s)	322, 419
EcoT38I	GRGCYC	1 cut(s)	626
FaeI	CATG	1 cut(s)	701
FatI	CATG	1 cut(s)	697
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	5 cut(s)	128, 165, 210, 246, 749
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	90, 123, 306
Hin1II	CATG	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	6 cut(s)	119, 126, 283, 491, 646, 725
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	3 cut(s)	90, 123, 306
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	311, 553
Hpy188I	TCNGA	3 cut(s)	106, 282, 356
Hpy188III	TCNNGA	2 cut(s)	123, 388
Hpy8I	GTNNAC	2 cut(s)	311, 553
HpyAV	CCTTC	2 cut(s)	472, 727
HpyCH4III	ACNGT	3 cut(s)	24, 315, 480
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	320, 417, 476, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 275
HpyF3I	CTNAG	3 cut(s)	103, 281, 594
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	701
Kpn2I	TCCGGA	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	49, 103, 136, 173, 319, 551, 632, 635, 671
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	94, 301, 364
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	5 cut(s)	4, 52, 165, 210, 535
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	3 cut(s)	537, 584, 626
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	3 cut(s)	343, 471, 628
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	3 cut(s)	135, 292, 719
MnlI	CCTC	3 cut(s)	76, 155, 284
Mox20I	TGGCCA	1 cut(s)	191
Mph1103I	ATGCAT	2 cut(s)	322, 419
MroI	TCCGGA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	4 cut(s)	204, 249, 441, 552
MslI	CAYNNNNRTG	2 cut(s)	264, 450
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	3 cut(s)	90, 123, 306
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	38, 275
NdeII	GATC	1 cut(s)	394
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	2 cut(s)	199, 536
NmuCI	GTSAC	2 cut(s)	94, 364
NsiI	ATGCAT	2 cut(s)	322, 419
PciSI	GCTCTTC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	119, 491, 646
PinAI	ACCGGT	2 cut(s)	89, 305
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	3 cut(s)	134, 291, 719
PpsI	GAGTC	3 cut(s)	134, 291, 719
Psp124BI	GAGCTC	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	199, 536
PspPI	GGNCC	1 cut(s)	714
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	264, 450
SacI	GAGCTC	1 cut(s)	626
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	204, 249, 441, 552
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	3 cut(s)	135, 292, 719
SduI	GDGCHC	3 cut(s)	537, 584, 626
SetI	ASST	9 cut(s)	60, 203, 303, 441, 540, 626, 640, 770, 782
SfaNI	GCATC	1 cut(s)	179
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	714
SmiMI	CAYNNNNRTG	2 cut(s)	264, 450
Sse9I	AATT	3 cut(s)	343, 471, 628
SsiI	CCGC	1 cut(s)	717
SspMI	CTAG	1 cut(s)	777
SstI	GAGCTC	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	24, 315, 480
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	53, 129, 387
TasI	AATT	3 cut(s)	343, 471, 628
TfiI	GAWTC	3 cut(s)	119, 491, 646
Tru1I	TTAA	4 cut(s)	204, 249, 441, 552
Tru9I	TTAA	4 cut(s)	204, 249, 441, 552
TseFI	GTSAC	2 cut(s)	94, 364
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	94, 364
TspDTI	ATGAA	5 cut(s)	130, 393, 686, 734, 765
VpaK11BI	GGWCC	1 cut(s)	714
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	777
Zsp2I	ATGCAT	2 cut(s)	322, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.