Rh5DG432800

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009671
Physical Location & Seq
Reverse (-)
69153017 .. 69154098
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG432800.1

Sequence Viewer

Length: 915 bp
ATGAACTCAACTAGGCTGCAATTGTTTCTTTTCCTCCAAATGACATTGTTCTTCACAACAATGTCAATAGCCGAAGCAGCCCCAGCAAACTCGAAGCTCTTCAGGGAATACATAGGAGCCGAGGGCGTCGGTGTCACATTCTCTGATGTACCAATTGATTCCCGAGTCGAGTTTCACTTCATCCTTTCCTTTGCTATTGACTACACAACATCTTCCCGTCCTAAACCCACCAATGGCAACTTCAATGTGTTCTGGGACACAGATAATCTCAGCCCTTCTCATGTTTCCGCCATTAAGGCCCGTCATCGAAATGCTAAAGTAGCACTGAGTCTTGGAGGAGATACCGTAGCTGGTAAACCTGCTAACTTCACTCCTACATCAATCAATTCTTGGGTCAGAAATGCTATCGCTTCGATAGTTCAGATAACGAAAGAATACAAGTTGGATGGAATCGATATAGACTATGAACACTTCAACACGGATCCCAATACGTTTGCTGAATGCATTGGGCGACTATTCTTCTACCTTAAACAAAATAAGGTTGTGTCCTTCACATCAATAGCACCATATGACGATGATTCTGTGCAACCATATTACTTGGCATTGTGGAGGAAGTATGGGAATCTCATTGACTATGTTAACTTTCAGTTCTATGCCTATGATAAGGGCACATCTATTACTCAGTTCATGAAATATTTTGGGACTCAGAGCTCAAATTACAAAGGTGGCAAGGTTCTAGTGAGCTTTGGAACGGACAACAGTGGGGGTTTGTCTCCTGAAAATGGGTTCTTTGAGGCTTGTGCTAGGCTTAAAAATCAGGGCAAGCTTCATGGCATTTTTATTTGGTCTGCAGACGACTCCAAGAAGGCTCACTTTCGTTATGAGAAGCAATCACAAAGCCTTCTTGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

304

Amino Acids

34.2

Weight (kDa)

8.33

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 91 - 222 3.4e-13 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AciI CCGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 476, 489
AcuI CTGAAG 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 233, 782
AgsI TTSAA 2 cut(s) 244, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 5 cut(s) 97, 350, 711, 744, 826
AluI AGCT 5 cut(s) 97, 350, 711, 744, 826
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 777
AlwI GGATC 2 cut(s) 476, 489
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 16, 77
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 671
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 3, 89
BccI CCATC 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 777
BfaI CTAG 3 cut(s) 12, 737, 804
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 17, 78
BlsI GCNGC 2 cut(s) 18, 79
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 118, 483
Bsa29I ATCGAT 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 782
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 180, 451
BseLI CCNNNNNNNGG 2 cut(s) 233, 782
BseMII CTCAG 4 cut(s) 283, 317, 695, 719
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 2 cut(s) 3, 89
BseYI CCCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 713
BsiHKCI CYCGRG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 269, 715
BslI CCNNNNNNNGG 2 cut(s) 233, 782
BsmAI GTCTC 1 cut(s) 777
BsmFI GGGAC 2 cut(s) 269, 715
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 671, 713
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 4 cut(s) 282, 318, 694, 718
BspDI ATCGAT 1 cut(s) 453
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 118, 483
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 2 cut(s) 476, 489
BspQI GCTCTTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 481
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 346, 761
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 824
BstDEI CTNAG 4 cut(s) 269, 326, 681, 705
BstF5I GGATG 2 cut(s) 180, 451
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 777
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 4 cut(s) 77, 83, 296, 320
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 671
BstV1I GCAGC 2 cut(s) 3, 89
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 2 cut(s) 180, 451
BtsIMutI CAGTG 2 cut(s) 323, 766
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 824
CciI TCATGA 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 453
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 149
CviAII CATG 3 cut(s) 281, 688, 830
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 4 cut(s) 269, 326, 681, 705
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 711
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 713
FaeI CATG 3 cut(s) 284, 691, 833
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 2 cut(s) 269, 715
FatI CATG 3 cut(s) 280, 687, 829
FauNDI CATATG 1 cut(s) 568
Fnu4HI GCNGC 2 cut(s) 17, 78
FokI GGATG 2 cut(s) 167, 458
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 2 cut(s) 17, 78
FspBI CTAG 3 cut(s) 12, 737, 804
GluI GCNGC 2 cut(s) 17, 78
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 299
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 284, 691, 833
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 8 cut(s) 158, 165, 328, 450, 578, 622, 703, 857
HpaI GTTAAC 1 cut(s) 640
Hpy166II GTNNAC 2 cut(s) 356, 640
Hpy188I TCNGA 4 cut(s) 145, 398, 423, 708
Hpy188III TCNNGA 3 cut(s) 162, 688, 776
Hpy8I GTNNAC 2 cut(s) 356, 640
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 285, 559, 859, 911
HpyCH4III ACNGT 2 cut(s) 346, 761
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 4 cut(s) 19, 504, 586, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 83, 296, 320
HpyF3I CTNAG 4 cut(s) 269, 326, 681, 705
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 284, 691, 833
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 1 cut(s) 481
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 7 cut(s) 88, 96, 238, 336, 372, 789, 803
Lsp1109I GCAGC 2 cut(s) 3, 89
MaeI CTAG 3 cut(s) 12, 737, 804
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 4 cut(s) 43, 91, 204, 511
MfeI CAATTG 2 cut(s) 20, 153
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 671, 713
MluCI AATT 4 cut(s) 20, 153, 385, 715
MlyI GAGTC 4 cut(s) 174, 337, 697, 851
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 5 cut(s) 44, 115, 329, 603, 787
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 4 cut(s) 294, 528, 639, 810
MslI CAYNNNNRTG 2 cut(s) 59, 309
MunI CAATTG 2 cut(s) 20, 153
Mva1269I GAATGC 1 cut(s) 506
MwoI GCNNNNNNNGC 4 cut(s) 77, 83, 296, 320
NdeI CATATG 1 cut(s) 568
NdeII GATC 1 cut(s) 481
NlaIII CATG 3 cut(s) 284, 691, 833
NlaIV GGNNCC 2 cut(s) 118, 483
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 506
PagI TCATGA 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 4 cut(s) 158, 450, 578, 622
PkrI GCNGC 2 cut(s) 18, 79
PleI GAGTC 4 cut(s) 173, 336, 697, 851
PpsI GAGTC 4 cut(s) 173, 336, 697, 851
Psp124BI GAGCTC 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 118, 483
PspPI GGNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 59, 309
SacI GAGCTC 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 294, 528, 639, 810
SatI GCNGC 2 cut(s) 17, 78
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 4 cut(s) 174, 337, 697, 851
SduI GDGCHC 2 cut(s) 671, 713
SfcI CTRYAG 1 cut(s) 849
SmiMI CAYNNNNRTG 2 cut(s) 59, 309
Sse9I AATT 4 cut(s) 20, 153, 385, 715
SsiI CCGC 1 cut(s) 288
SspI AATATT 1 cut(s) 695
SspMI CTAG 3 cut(s) 12, 737, 804
SstI GAGCTC 1 cut(s) 713
TaaI ACNGT 2 cut(s) 346, 761
TaiI ACGT 1 cut(s) 494
TaqI TCGA 5 cut(s) 92, 168, 307, 413, 453
TasI AATT 4 cut(s) 20, 153, 385, 715
TfiI GAWTC 4 cut(s) 158, 450, 578, 622
Tru1I TTAA 4 cut(s) 294, 528, 639, 810
Tru9I TTAA 4 cut(s) 294, 528, 639, 810
TscAI CASTG 2 cut(s) 330, 766
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 16, 77
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 6 cut(s) 17, 169, 480, 676, 704, 818
TspGWI ACGGA 2 cut(s) 494, 767
TspRI CASTG 2 cut(s) 330, 766
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 12, 737, 804
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.