Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009671

Physical Location & Seq

Genomic Coordinates Reverse (-)

67901771 .. 67902625

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAATAGCCGGAGCAGCCCCAGCAAACTCGAAGCTCTTCAGGGAATACATAGGAGCCGAGGGCGTTGGTGTCACATTCTCTGATGTACCAATTGATTCCCGAGTCGAGTTTCACTTCATCCTTTCCTTTGCTATTGACTACACAACATCTTCCCGTCCTAAACCCACCAATGGCAACTTCAATGTGTTCTGGGACACAGAGAATCTCAGCCCTTCTCATGTTTCCGCCATTAAGGCCCGTCATCGAAATGTTAAAGTAGCTCTGAGTCTTGGAGGAGATACCGTAGCTGGTAAACCTGCTAACTTCACTCCTACATCAATCAATTCTTGGGTCAGAAATGCTATCGCTTCGATAGTTCAGATAACGAAACAATACAAGTTGGATGGAATCGATATAGACTATGAACACTTCAACACGGATCCCAACACATTTGCTGAATGCATTGGGCGACTATTCTTCTACCTTAAACAAAATAAGGTTGTGTCCTTCACATCAATAGCACCATATGACAATGATTCTGTGCAACCATATTACTTGGCATTGTGGAGGAAGTATGGGAATCTCATTGACTATGTTAACTTTCAGTTCTATGCCTATGATAAGGGCACATCTATTACTCAGTTCATGAAATATTTTGGGACTCAGAGCTCAAATTACAAAGGTGGCAAGGTTCTAGTGAGCTTTGGAACGGACAACAGTGGGGGTTTGTCTCCTGAAAATGGGTTCTTTGAGGCTTGTGCTAGGCTTAAAAATCAGGGCAAGCTTCATGGCATTTTTATTTGGTCTGCAGACGACTCCAAGAAGGCTCACTTTCGTTATGAGAAGCAATCACAAAGCCTTCTTGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

285

Amino Acids

31.72

Weight (kDa)

8.84

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	63 - 202	5.9e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	63 - 212	6e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34301 FvH4_3g34320
malus_domestica	MD11G1119200.v1.1
prunus_persica	Prupe.6G089400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061901
rosa_laevigata	RLG00000035513 RLG00000035515
rosa_multiflora	Rmu_sc0011641.1_g000008 Rmu_sc0011641.1_g000010 Rmu_sc0019271.1_g000003 Rmu_sc0019271.1_g000004
rosa_rugosa	Rorug05G0345000
rosa_samantha	Rh5AG405800 Rh5BG418500 Rh5BG418800 Rh5CG443000 Rh5CG443200 Rh5DG432600 Rh5DG432800
rosa_wichuraiana	Rw5G038090 Rw5G038240 Rw5G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	416, 429
AcuI	CTGAAG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	173, 722
AgsI	TTSAA	2 cut(s)	184, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	7 cut(s)	37, 263, 290, 651, 684, 766, 852
AluI	AGCT	7 cut(s)	37, 263, 290, 651, 684, 766, 852
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	416, 429
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	848
AvaI	CYCGRG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	677, 744, 849
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	58, 423
BmtI	GCTAGC	1 cut(s)	852
Bsa29I	ATCGAT	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 722
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	120, 391
BseLI	CCNNNNNNNGG	2 cut(s)	173, 722
BseMII	CTCAG	4 cut(s)	223, 257, 635, 659
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	209, 655
BslI	CCNNNNNNNGG	2 cut(s)	173, 722
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	2 cut(s)	209, 655
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	611, 653
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	4 cut(s)	222, 258, 634, 658
BspDI	ATCGAT	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	58, 423
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	852
BspPI	GGATC	2 cut(s)	416, 429
BspQI	GCTCTTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	286, 701
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	764, 850
BstDEI	CTNAG	4 cut(s)	209, 266, 621, 645
BstF5I	GGATG	2 cut(s)	120, 391
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 23, 236
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	120, 391
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	764, 850
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	221, 628, 770
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	209, 266, 621, 645
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	653
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	653
FaeI	CATG	3 cut(s)	224, 631, 773
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	209, 655
FatI	CATG	3 cut(s)	220, 627, 769
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	107, 398
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	3 cut(s)	677, 744, 849
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	3 cut(s)	224, 631, 773
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	9 cut(s)	98, 105, 205, 268, 390, 518, 562, 643, 797
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	296, 580
Hpy188I	TCNGA	5 cut(s)	85, 267, 338, 363, 648
Hpy188III	TCNNGA	3 cut(s)	102, 628, 716
Hpy8I	GTNNAC	2 cut(s)	296, 580
HpyAV	CCTTC	4 cut(s)	225, 499, 799, 851
HpyCH4III	ACNGT	2 cut(s)	286, 701
HpyCH4V	TGCA	3 cut(s)	444, 526, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 23, 236
HpyF3I	CTNAG	4 cut(s)	209, 266, 621, 645
Hsp92II	CATG	3 cut(s)	224, 631, 773
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	421
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	14, 56
LpnPI	CCDG	8 cut(s)	25, 28, 36, 178, 276, 312, 729, 743
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	3 cut(s)	677, 744, 849
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	31, 144, 451
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	611, 653
MluCI	AATT	3 cut(s)	93, 325, 655
MlyI	GAGTC	4 cut(s)	114, 277, 637, 791
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	55, 269, 543, 727
Mph1103I	ATGCAT	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	5 cut(s)	234, 255, 468, 579, 750
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	17, 23, 236
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	1 cut(s)	421
NheI	GCTAGC	1 cut(s)	848
NlaIII	CATG	3 cut(s)	224, 631, 773
NlaIV	GGNNCC	2 cut(s)	58, 423
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	446
PagI	TCATGA	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	5 cut(s)	98, 205, 390, 518, 562
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	4 cut(s)	113, 276, 637, 791
PpsI	GAGTC	4 cut(s)	113, 276, 637, 791
Psp124BI	GAGCTC	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	58, 423
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	234, 255, 468, 579, 750
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	4 cut(s)	114, 277, 637, 791
SduI	GDGCHC	2 cut(s)	611, 653
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	93, 325, 655
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	3 cut(s)	677, 744, 849
SstI	GAGCTC	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	286, 701
TaqI	TCGA	5 cut(s)	32, 108, 247, 353, 393
TasI	AATT	3 cut(s)	93, 325, 655
TfiI	GAWTC	5 cut(s)	98, 205, 390, 518, 562
Tru1I	TTAA	5 cut(s)	234, 255, 468, 579, 750
Tru9I	TTAA	5 cut(s)	234, 255, 468, 579, 750
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	109, 420, 616, 644, 758
TspGWI	ACGGA	2 cut(s)	434, 707
TspRI	CASTG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	3 cut(s)	677, 744, 849
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.