Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

6943789 .. 6945323

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTAAAATAACAATGTCACATATATTGTTGGCTCTATTTGTGGTGCTTGTTTCTATGGAAGCCGCCTTGGTTATGGGGGCAGGCAGCGGAAATGGAAATGGGAACGGGAATGGGAACACTGCCAGTGGCAATGGCAATGGCAACGGCAACGGTAATGACGATGAAGCTGATGACACTGCTGTGGCACATTACGACGAATTGACAGCACTGGAATCCGGGGAGGAGCGAGGTTTCTGCAAAGCAAAGGGGCCCTGTTATTACAAGACCCTTGTGTGTCCATCTGAATGCCCTCAGCGGAAGCCAAAGAAGAACAAGAAACACAAGGGTTGCTTCATCAACTGCGGCAGCAAGTGCGAAGTTACTTGCAAGTATAGGAAAGCTAACTGCAATGGATATGGCTCTCTCTGCTACGATCCTAGGTTCGTTGGTGGCGACGGTGTAATGTTCTACTTCCACGGAGCCAAGGGAGGAGACTTTGCCATTGTCTCAGACAAAAACCTCCAGATCAACGCACACTTCATTGGGACCCGACCAGCAGGAAGGACCCGTGATTTCACATGGGTTCAGGCCCTGGCAGTGATGTTCGACACTCACACCCTTGTTATTGCAGCAAAGAGGGTCTCAAAGTGGGATGACAAAGTTGATGCTCTCATGGTAAAGTGGGATGGTGAGGCAGTAACCATCCCCGCTGATGGAGATGCGGAATGGAGGACGAATGGCGAAAACAGAGAGGTGATAGTCGAAAGAACCGATGACACAAATTACGTAAGAGTTACAGTTGCTGGTCTCCTAGAAATGGACATAAAAGTCAGGCCTATTGGAGAAGAGGAAAACAGAGTTCATAACTACCAAATACCAGCTGATGATACTTTTGCTCATCTGGAGACACAATTCAGATTTTCAAATTTATCTGATCTCGTGGAGGGAGTTTTGGGCAAGACTTACAGGCCAGGTTATGTTAGTCCAGTGAAGGTTGGGGTTCCAATGCCAATGATGGGTGGGGAGGACAAGTACCAAACTTCGTCCCTCTTTTCTCCTCTCTGCAAGGTTTGCAGGTTCGAAAAACAACCTGAGCTTGCAGCAACTGGAGGAGTTGCTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

370

Amino Acids

40.27

Weight (kDa)

6.1

Isoelectric Point (pI)

16.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	1047
AciI	CCGC	6 cut(s)	66, 90, 298, 345, 690, 704
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	907
AfaI	GTAC	2 cut(s)	1016, 1106
AfiI	CCNNNNNNNGG	3 cut(s)	695, 799, 998
AgsI	TTSAA	1 cut(s)	906
AjnI	CCWGG	2 cut(s)	573, 952
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	4 cut(s)	170, 383, 863, 1078
AluI	AGCT	4 cut(s)	170, 383, 863, 1078
Alw26I	GTCTC	5 cut(s)	468, 493, 628, 794, 881
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	3 cut(s)	574, 785, 1088
AoxI	GGCC	4 cut(s)	251, 570, 815, 950
ApaI	GGGCCC	1 cut(s)	255
ApeKI	GCWGC	4 cut(s)	87, 348, 611, 1082
ApoI	RAATTY	1 cut(s)	907
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	5 cut(s)	251, 252, 528, 546, 571
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	683, 748
AsuII	TTCGAA	1 cut(s)	1062
AvaII	GGWCC	2 cut(s)	528, 546
AvrII	CCTAGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	920
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	99, 360, 623, 1094
BccI	CCATC	5 cut(s)	289, 662, 689, 692, 991
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	2 cut(s)	575, 954
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	5 cut(s)	468, 493, 628, 794, 881
BfaI	CTAG	2 cut(s)	420, 794
BfuAI	ACCTGC	1 cut(s)	1047
BisI	GCNGC	6 cut(s)	66, 88, 346, 349, 612, 1083
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	6 cut(s)	67, 89, 347, 350, 613, 1084
BmcAI	AGTACT	1 cut(s)	1106
Bme1390I	CCNGG	3 cut(s)	220, 575, 954
Bme18I	GGWCC	2 cut(s)	528, 546
BmgT120I	GGNCC	5 cut(s)	251, 252, 528, 546, 571
BmiI	GGNNCC	7 cut(s)	252, 253, 463, 529, 530, 548, 984
BmrFI	CCNGG	3 cut(s)	220, 575, 954
BmsI	GCATC	2 cut(s)	637, 691
BpmI	CTGGAG	3 cut(s)	488, 905, 1110
Bpu10I	CCTNAGC	2 cut(s)	294, 1074
Bpu14I	TTCGAA	1 cut(s)	1062
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	769
BsaI	GGTCTC	2 cut(s)	628, 794
BsaJI	CCNNGG	6 cut(s)	69, 219, 419, 457, 465, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	998, 1028
Bsc4I	CCNNNNNNNGG	3 cut(s)	695, 799, 998
Bse1I	ACTGG	4 cut(s)	126, 216, 968, 1093
Bse3DI	GCAATG	3 cut(s)	139, 145, 397
BseBI	CCWGG	2 cut(s)	575, 954
BseDI	CCNNGG	6 cut(s)	69, 219, 419, 457, 465, 573
BseGI	GGATG	3 cut(s)	640, 673, 684
BseLI	CCNNNNNNNGG	3 cut(s)	695, 799, 998
BseMI	GCAATG	3 cut(s)	139, 145, 397
BseMII	CTCAG	3 cut(s)	308, 504, 1065
BseNI	ACTGG	4 cut(s)	126, 216, 968, 1093
BseRI	GAGGAG	4 cut(s)	239, 486, 1029, 1107
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	99, 360, 623, 1094
BshFI	GGCC	4 cut(s)	253, 572, 817, 952
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	541, 1012
BslI	CCNNNNNNNGG	3 cut(s)	695, 799, 998
BsmAI	GTCTC	5 cut(s)	468, 493, 628, 794, 881
BsmFI	GGGAC	2 cut(s)	541, 1012
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	4 cut(s)	253, 572, 817, 952
Bso31I	GGTCTC	2 cut(s)	628, 794
Bsp119I	TTCGAA	1 cut(s)	1062
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	415, 507, 916
BspACI	CCGC	6 cut(s)	66, 90, 298, 345, 690, 704
BspANI	GGCC	4 cut(s)	253, 572, 817, 952
BspCNI	CTCAG	3 cut(s)	307, 503, 1066
BspLI	GGNNCC	7 cut(s)	252, 253, 463, 529, 530, 548, 984
BspMI	ACCTGC	1 cut(s)	1047
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	1062
BspTNI	GGTCTC	2 cut(s)	628, 794
BsrDI	GCAATG	3 cut(s)	139, 145, 397
BsrI	ACTGG	4 cut(s)	126, 216, 968, 1093
BssECI	CCNNGG	6 cut(s)	69, 219, 419, 457, 465, 573
BssMI	GATC	3 cut(s)	415, 507, 916
BssSI	CACGAG	1 cut(s)	920
BssT1I	CCWWGG	3 cut(s)	69, 419, 465
Bst2BI	CACGAG	1 cut(s)	920
Bst2UI	CCWGG	2 cut(s)	575, 954
Bst4CI	ACNGT	3 cut(s)	155, 440, 781
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	2 cut(s)	354, 1053
BstBAI	YACGTR	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	1062
BstC8I	GCNNGC	2 cut(s)	85, 1080
BstDEI	CTNAG	4 cut(s)	294, 490, 1074, 1101
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	640, 673, 684
BstKTI	GATC	3 cut(s)	418, 510, 919
BstMAI	GTCTC	5 cut(s)	468, 493, 628, 794, 881
BstMBI	GATC	3 cut(s)	415, 507, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	354, 408, 1053
BstNI	CCWGG	2 cut(s)	575, 954
BstSCI	CCNGG	3 cut(s)	218, 573, 952
BstSLI	GKGCMC	1 cut(s)	255
BstSNI	TACGTA	1 cut(s)	769
BstV1I	GCAGC	4 cut(s)	99, 360, 623, 1094
BsuRI	GGCC	4 cut(s)	253, 572, 817, 952
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	640, 673, 684
BtsI	GCAGTG	3 cut(s)	120, 177, 585
BtsIMutI	CAGTG	6 cut(s)	120, 133, 177, 209, 585, 975
BveI	ACCTGC	1 cut(s)	1047
Cac8I	GCNNGC	2 cut(s)	85, 1080
CaiI	CAGNNNCTG	3 cut(s)	574, 785, 1088
Cfr13I	GGNCC	5 cut(s)	251, 252, 528, 546, 571
Csp6I	GTAC	2 cut(s)	1015, 1105
CviAII	CATG	2 cut(s)	561, 655
CviQI	GTAC	2 cut(s)	1015, 1105
DdeI	CTNAG	4 cut(s)	294, 490, 1074, 1101
DpnI	GATC	3 cut(s)	417, 509, 918
DpnII	GATC	3 cut(s)	415, 507, 916
DrdI	GACNNNNNNGTC	1 cut(s)	809
DseDI	GACNNNNNNGTC	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco105I	TACGTA	1 cut(s)	769
Eco130I	CCWWGG	3 cut(s)	69, 419, 465
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	628, 794
Eco47I	GGWCC	2 cut(s)	528, 546
EcoO109I	RGGNCCY	5 cut(s)	251, 252, 528, 546, 571
EcoRII	CCWGG	2 cut(s)	573, 952
EcoT14I	CCWWGG	3 cut(s)	69, 419, 465
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	3 cut(s)	69, 419, 465
FaeI	CATG	2 cut(s)	564, 658
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	2 cut(s)	541, 1012
FatI	CATG	2 cut(s)	560, 654
FauI	CCCGC	1 cut(s)	697
Fnu4HI	GCNGC	6 cut(s)	66, 88, 346, 349, 612, 1083
FokI	GGATG	3 cut(s)	647, 671, 680
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	66, 88, 346, 349, 612, 1083
FspBI	CTAG	2 cut(s)	420, 794
GluI	GCNGC	6 cut(s)	66, 88, 346, 349, 612, 1083
GsuI	CTGGAG	3 cut(s)	488, 905, 1110
HaeIII	GGCC	4 cut(s)	253, 572, 817, 952
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	564, 658
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	683, 748
Hpy188I	TCNGA	4 cut(s)	286, 493, 899, 916
Hpy188III	TCNNGA	2 cut(s)	505, 884
Hpy99I	CGWCG	2 cut(s)	200, 440
HpyAV	CCTTC	2 cut(s)	537, 967
HpyCH4III	ACNGT	3 cut(s)	155, 440, 781
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	7 cut(s)	240, 369, 390, 611, 1047, 1056, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	354, 408, 1053
HpyF3I	CTNAG	4 cut(s)	294, 490, 1074, 1101
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	2 cut(s)	564, 658
KflI	GGGWCCC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	415, 507, 916
LmnI	GCTCC	2 cut(s)	226, 461
Lsp1109I	GCAGC	4 cut(s)	99, 360, 623, 1094
LweI	GCATC	2 cut(s)	637, 691
MaeI	CTAG	2 cut(s)	420, 794
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	4 cut(s)	18, 361, 679, 775
MalI	GATC	3 cut(s)	417, 509, 918
MboI	GATC	3 cut(s)	415, 507, 916
MboII	GAAGA	2 cut(s)	322, 839
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	4 cut(s)	200, 763, 893, 907
MslI	CAYNNNNRTG	2 cut(s)	182, 286
MspA1I	CMGCKG	4 cut(s)	90, 298, 692, 863
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	3 cut(s)	220, 575, 954
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	575, 954
MwoI	GCNNNNNNNGC	3 cut(s)	354, 408, 1053
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	415, 507, 916
NlaIII	CATG	2 cut(s)	564, 658
NlaIV	GGNNCC	7 cut(s)	252, 253, 463, 529, 530, 548, 984
NmuCI	GTSAC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	1062
OliI	CACNNNNGTG	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 432, 750
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	6 cut(s)	67, 89, 347, 350, 613, 1084
Ppu21I	YACGTR	1 cut(s)	769
PpuMI	RGGWCCY	2 cut(s)	528, 546
Psp5II	RGGWCCY	2 cut(s)	528, 546
Psp6I	CCWGG	2 cut(s)	573, 952
PspGI	CCWGG	2 cut(s)	573, 952
PspN4I	GGNNCC	7 cut(s)	252, 253, 463, 529, 530, 548, 984
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	5 cut(s)	251, 252, 528, 546, 571
PspPPI	RGGWCCY	2 cut(s)	528, 546
PstNI	CAGNNNCTG	3 cut(s)	574, 785, 1088
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	1016, 1106
RsaNI	GTAC	2 cut(s)	1015, 1105
RseI	CAYNNNNRTG	2 cut(s)	182, 286
SatI	GCNGC	6 cut(s)	66, 88, 346, 349, 612, 1083
Sau3AI	GATC	3 cut(s)	415, 507, 916
Sau96I	GGNCC	5 cut(s)	251, 252, 528, 546, 571
ScaI	AGTACT	1 cut(s)	1106
ScrFI	CCNGG	3 cut(s)	220, 575, 954
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	2 cut(s)	637, 691
SfuI	TTCGAA	1 cut(s)	1062
SinI	GGWCC	2 cut(s)	528, 546
SmiMI	CAYNNNNRTG	2 cut(s)	182, 286
SnaBI	TACGTA	1 cut(s)	769
Sse9I	AATT	4 cut(s)	200, 763, 893, 907
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	6 cut(s)	66, 90, 298, 345, 690, 704
SspMI	CTAG	2 cut(s)	420, 794
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	218, 573, 952
StyI	CCWWGG	3 cut(s)	69, 419, 465
TaaI	ACNGT	3 cut(s)	155, 440, 781
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	3 cut(s)	588, 744, 1062
TasI	AATT	4 cut(s)	200, 763, 893, 907
TatI	WGTACW	1 cut(s)	1104
TauI	GCSGC	2 cut(s)	68, 348
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	6 cut(s)	127, 133, 184, 216, 585, 975
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	4 cut(s)	87, 348, 611, 1082
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	4 cut(s)	180, 325, 511, 833
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	6 cut(s)	127, 133, 184, 216, 585, 975
VpaK11BI	GGWCC	2 cut(s)	528, 546
XapI	RAATTY	1 cut(s)	907
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	420, 794
ZrmI	AGTACT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.