RLG00000035320

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002778
Physical Location & Seq
Forward (+)
64944074 .. 64945483
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035320

Sequence Viewer

Length: 1059 bp
ATGGCTACAATAAGAACGTCACATACATTGGTGGCCCTCCTTGTTGTGCTCGTTTCCATGGAAGCAGTGTCCTTTGTTCTGGGCCAAGGCAATGGAAATGGAAACGGCAATGGCAATGGCAATAGTGGCAACGGTAACGGGAATGGGAATGGCAATGACTACGATGAATTGTCACCGTTAGCATCCGGACAGGAGAGAGGCTTCTGTAAAGCAAAGAATGCCTGCTATTACAAGACCCTTGTCTGTCCATCAGAATGCCCTCAGAGAAAGCCAAAGAAGAACAAGAAACACAAGGGTTGTTTCATCAACTGCGGCAACAAATGTGAAGTCACTTGCAAGTGGAGGAAAGCCAAGTGTAATGGGTATGGTTCTCTCTGCTATGACCCAAGGTTTGTAGGTGGTGATGGTGTAATGTTCTACTTCCATGGAGCCAAAGGAGGAAACTTTGCCATTGTTTCAGATAACAACCTCCAAATCAATGCACACTTCATTGGAACTCGACCACTAGGAAGGACTCGCGACTTCACGTGGGTTCAAGCCCTCTCAATCATGTTCGACACTCACACCCTTGTAATTGCAGCGAAGAGAGTCTCAAAGTGGGATGACAAAGTTGACGCTCTCATGGTAAAGTGGGATGGTGAGTCAGTCAGCATCCCCACTGATGGAGAAGCCGAATGGAGGATCATGGCCGAAGGAAGAGAAGTAATAGTTGAAAGAACTGATGATAGAAACTACCTAAGAGTTACAGTTTCAGGGCTGGTAGAGATGGACATAAGGGTCAGGCCTATTGGAGCAGAAGAAAACAAGGTTCATAACTACCAAATACCATCAGATGATACTTTTGCTCACTTAGAGACACAATTCAGGTTTTCCAACTTATCTGATCTTGTGGAAGGAGTTTTGGGAAAGACTTACAGGCCAGGCTATGTTAGTCCAGTTAAGGTTGGAGTTCCAATGCCAATGATGGGCGGAGAGGACAAGTACGAAACTCCATCACTCTTTTCACCTCTCTGCAAGGTTTGCAGGTTCCAAAGGCAATCTGGACTTGCTCAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

353

Amino Acids

38.9

Weight (kDa)

8.63

Isoelectric Point (pI)

18.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 287 - 343 1.8e-29 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 1014
AccII CGCG 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 2 cut(s) 312, 969
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 1 cut(s) 687
AcvI CACGTG 1 cut(s) 528
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 3 cut(s) 662, 678, 965
AgsI TTSAA 2 cut(s) 536, 713
AjnI CCWGG 1 cut(s) 919
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 595, 848
AlwI GGATC 1 cut(s) 689
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 5 cut(s) 33, 82, 687, 782, 917
ApeKI GCWGC 1 cut(s) 578
ArsI GACNNNNNNTTYG 4 cut(s) 312, 344, 374, 406
AspS9I GGNCC 2 cut(s) 34, 82
AsuHPI GGTGA 4 cut(s) 165, 413, 650, 996
BbrPI CACGTG 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 590
BccI CCATC 8 cut(s) 256, 398, 629, 656, 760, 835, 958, 1000
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 595, 848
BfaI CTAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 1014
BisI GCNGC 2 cut(s) 313, 579
BlsI GCNGC 2 cut(s) 314, 580
Bme1390I CCNGG 1 cut(s) 921
BmgT120I GGNCC 2 cut(s) 34, 82
BmiI GGNNCC 2 cut(s) 430, 1028
BmrFI CCNGG 1 cut(s) 921
BmsI GCATC 2 cut(s) 191, 660
BoxI GACNNNNGTC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 528
BsaJI CCNNGG 4 cut(s) 57, 85, 386, 424
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 678, 965
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 4 cut(s) 97, 115, 121, 160
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 4 cut(s) 57, 85, 386, 424
BseGI GGATG 4 cut(s) 182, 607, 640, 651
BseLI CCNNNNNNNGG 3 cut(s) 662, 678, 965
BseMI GCAATG 4 cut(s) 97, 115, 121, 160
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 935
BseXI GCAGC 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 5 cut(s) 35, 84, 689, 784, 919
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 662, 678, 965
BsmAI GTCTC 2 cut(s) 595, 848
BsmI GAATGC 2 cut(s) 223, 260
BsnI GGCC 5 cut(s) 35, 84, 689, 784, 919
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 2 cut(s) 681, 883
Bsp19I CCATGG 2 cut(s) 57, 424
Bsp68I TCGCGA 1 cut(s) 519
BspACI CCGC 2 cut(s) 312, 969
BspANI GGCC 5 cut(s) 35, 84, 689, 784, 919
BspCNI CTCAG 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 185
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 430, 1028
BspMI ACCTGC 1 cut(s) 1014
BspPI GGATC 1 cut(s) 689
BsrDI GCAATG 4 cut(s) 97, 115, 121, 160
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 4 cut(s) 57, 85, 386, 424
BssMI GATC 2 cut(s) 681, 883
BssT1I CCWWGG 4 cut(s) 57, 85, 386, 424
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 134, 177, 748
Bst6I CTCTTC 2 cut(s) 578, 691
BstAPI GCANNNNNTGC 2 cut(s) 218, 1020
BstBAI YACGTR 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 261, 737, 850
BstDSI CCRYGG 2 cut(s) 57, 424
BstF5I GGATG 4 cut(s) 182, 607, 640, 651
BstFNI CGCG 1 cut(s) 519
BstKTI GATC 2 cut(s) 684, 886
BstMAI GTCTC 2 cut(s) 595, 848
BstMBI GATC 2 cut(s) 681, 883
BstMWI GCNNNNNNNGC 3 cut(s) 126, 218, 1020
BstNI CCWGG 1 cut(s) 921
BstPAI GACNNNNGTC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 919
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 5 cut(s) 35, 84, 689, 784, 919
BtgI CCRYGG 2 cut(s) 57, 424
BtsCI GGATG 4 cut(s) 182, 607, 640, 651
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 657
BtuMI TCGCGA 1 cut(s) 519
BveI ACCTGC 1 cut(s) 1014
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 34, 82
CseI GACGC 1 cut(s) 623
Csp6I GTAC 1 cut(s) 982
CviAII CATG 5 cut(s) 58, 425, 550, 622, 685
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 3 cut(s) 261, 737, 850
DpnI GATC 2 cut(s) 683, 885
DpnII GATC 2 cut(s) 681, 883
DrdI GACNNNNNNGTC 1 cut(s) 776
DseDI GACNNNNNNGTC 1 cut(s) 776
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 578, 691
EarI CTCTTC 2 cut(s) 578, 691
EciI GGCGGA 1 cut(s) 984
Eco130I CCWWGG 4 cut(s) 57, 85, 386, 424
Eco147I AGGCCT 1 cut(s) 784
Eco72I CACGTG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 919
EcoT14I CCWWGG 4 cut(s) 57, 85, 386, 424
ErhI CCWWGG 4 cut(s) 57, 85, 386, 424
FaeI CATG 5 cut(s) 61, 428, 553, 625, 688
FatI CATG 5 cut(s) 57, 424, 549, 621, 684
Fnu4HI GCNGC 2 cut(s) 313, 579
FokI GGATG 4 cut(s) 169, 614, 638, 647
Fsp4HI GCNGC 2 cut(s) 313, 579
FspBI CTAG 1 cut(s) 506
GluI GCNGC 2 cut(s) 313, 579
HaeIII GGCC 5 cut(s) 35, 84, 689, 784, 919
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 623
Hin1II CATG 5 cut(s) 61, 428, 553, 625, 688
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 3 cut(s) 514, 588, 641
HpaII CCGG 1 cut(s) 186
HphI GGTGA 4 cut(s) 165, 413, 650, 996
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 5 cut(s) 253, 264, 460, 832, 883
Hpy188III TCNNGA 3 cut(s) 186, 518, 1041
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 3 cut(s) 504, 686, 887
HpyCH4III ACNGT 3 cut(s) 134, 177, 748
HpyCH4IV ACGT 2 cut(s) 17, 527
HpyCH4V TGCA 5 cut(s) 336, 482, 578, 1014, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 218, 1020
HpyF3I CTNAG 3 cut(s) 261, 737, 850
HpySE526I ACGT 2 cut(s) 17, 527
Hsp92II CATG 5 cut(s) 61, 428, 553, 625, 688
Kpn2I TCCGGA 1 cut(s) 185
Kzo9I GATC 2 cut(s) 681, 883
LmnI GCTCC 2 cut(s) 428, 791
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 2 cut(s) 191, 660
MaeI CTAG 1 cut(s) 506
MaeII ACGT 2 cut(s) 17, 527
MaeIII GTNAC 5 cut(s) 18, 134, 171, 328, 742
MalI GATC 2 cut(s) 683, 885
MboI GATC 2 cut(s) 681, 883
MboII GAAGA 4 cut(s) 289, 595, 708, 809
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 167, 573, 860
MlyI GAGTC 3 cut(s) 508, 597, 650
MmeI TCCRAC 2 cut(s) 897, 925
MroI TCCGGA 1 cut(s) 185
MseI TTAA 1 cut(s) 939
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 921
Mva1269I GAATGC 2 cut(s) 223, 260
MvaI CCWGG 1 cut(s) 921
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 3 cut(s) 126, 218, 1020
NcoI CCATGG 2 cut(s) 57, 424
NdeII GATC 2 cut(s) 681, 883
NlaIII CATG 5 cut(s) 61, 428, 553, 625, 688
NlaIV GGNNCC 2 cut(s) 430, 1028
NmuCI GTSAC 3 cut(s) 18, 171, 328
NruI TCGCGA 1 cut(s) 519
PceI AGGCCT 1 cut(s) 784
PctI GAATGC 2 cut(s) 223, 260
PkrI GCNGC 2 cut(s) 314, 580
PleI GAGTC 3 cut(s) 508, 596, 649
PmaCI CACGTG 1 cut(s) 528
PmlI CACGTG 1 cut(s) 528
PpsI GAGTC 3 cut(s) 508, 596, 649
Ppu21I YACGTR 1 cut(s) 528
PshAI GACNNNNGTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 919
PspCI CACGTG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 2 cut(s) 430, 1028
PspPI GGNCC 2 cut(s) 34, 82
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
RruI TCGCGA 1 cut(s) 519
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 2 cut(s) 313, 579
Sau3AI GATC 2 cut(s) 681, 883
Sau96I GGNCC 2 cut(s) 34, 82
SchI GAGTC 3 cut(s) 508, 597, 650
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 2 cut(s) 191, 660
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 3 cut(s) 167, 573, 860
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 2 cut(s) 312, 969
SspMI CTAG 1 cut(s) 506
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 1 cut(s) 919
StyI CCWWGG 4 cut(s) 57, 85, 386, 424
TaaI ACNGT 3 cut(s) 134, 177, 748
TaiI ACGT 2 cut(s) 20, 530
TaqI TCGA 2 cut(s) 499, 555
TasI AATT 3 cut(s) 167, 573, 860
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TscAI CASTG 2 cut(s) 72, 664
TseFI GTSAC 3 cut(s) 18, 171, 328
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 3 cut(s) 18, 171, 328
TspDTI ATGAA 4 cut(s) 180, 292, 478, 800
TspRI CASTG 2 cut(s) 72, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.