Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000660.1

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

215162 .. 216397

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000660.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgtcacatacattggtggccctccttgttgtgctcgtttccatggaagcaatgtcctttgttctgggccaaggcaatggaaatggaaacggcaatggcaatggcaatagtggcaacggtaacggcaatggaaacgggaatgggaatggcaatgactacgatgaattgtcaccgttagcatccggacaggagagaggcttctgtaaagcaaagaacgcctgctattacaagacccttgtctgtccatcagaatgccctcagagaaagccaaagaagaacaagaaatacaagggttgtttcatcaactgcggcaacaaatgtgaagtcacttgcaagtggaggaaagccaagtgtaatgggtatggttctctctgctatgatccaaggtttgtaggtggtgatggtgtaatgttctacttccatggagccaaaggaggaaactttgccattgtttcagataacaacctccaaatcaatgcacacttcattggaactcgaccactaggaaggactcgcgacttcacatgggttcaagccctctcaatcatgttcgacactcacacccttgtaattgcagcaaagagagtctcaaagtgggatgacaaagttgacgctctcatggtaaagtgggatggtgagtcagtcagtgtccccactgatggagaagccgaatggaggatcatggccgaaggaagagaagtaatagttgaaagaaccgacgatagaaactacgtaagagttacagtttcagggctggtagagatggacataagggtcaggcctattggagcagaagaaaacaaggttcacaactaccaaataccatcagatgatacttttgctcacttagagacacaattcaggttttccaacttatctgatcttgtggaaggagttttgggaaagacttacaggccaggctatgttagtccagttaaggttggagttccgatgcccatgatgggcggagaggacaagtacgaaactccatcactcttttcacctctctgcaaggtttgcaggttccaaaggcaatctggacttgctcaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

351

Amino Acids

38.73

Weight (kDa)

8.51

Isoelectric Point (pI)

19.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	1011
AccII	CGCG	1 cut(s)	516
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	2 cut(s)	309, 966
AclWI	GGATC	2 cut(s)	374, 686
AcoI	YGGCCR	1 cut(s)	684
AfaI	GTAC	1 cut(s)	980
AfiI	CCNNNNNNNGG	3 cut(s)	659, 675, 962
AgsI	TTSAA	2 cut(s)	533, 710
AjnI	CCWGG	1 cut(s)	916
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	592, 845
AlwI	GGATC	2 cut(s)	374, 686
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	5 cut(s)	18, 67, 684, 779, 914
ApeKI	GCWGC	1 cut(s)	575
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspS9I	GGNCC	2 cut(s)	19, 67
AsuHPI	GGTGA	4 cut(s)	162, 410, 647, 993
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	8 cut(s)	253, 395, 626, 653, 757, 832, 955, 997
BceAI	ACGGC	2 cut(s)	106, 139
BciT130I	CCWGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	592, 845
BfaI	CTAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	1011
BisI	GCNGC	2 cut(s)	310, 576
BlsI	GCNGC	2 cut(s)	311, 577
Bme1390I	CCNGG	1 cut(s)	918
BmgT120I	GGNCC	2 cut(s)	19, 67
BmiI	GGNNCC	2 cut(s)	427, 1025
BmrFI	CCNGG	1 cut(s)	918
BmsI	GCATC	2 cut(s)	188, 942
BoxI	GACNNNNGTC	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	733
BsaJI	CCNNGG	4 cut(s)	42, 70, 383, 421
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 675, 962
Bse1I	ACTGG	1 cut(s)	932
Bse3DI	GCAATG	6 cut(s)	57, 82, 100, 106, 133, 157
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	4 cut(s)	42, 70, 383, 421
BseGI	GGATG	3 cut(s)	179, 604, 637
BseLI	CCNNNNNNNGG	3 cut(s)	659, 675, 962
BseMI	GCAATG	6 cut(s)	57, 82, 100, 106, 133, 157
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	932
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	5 cut(s)	20, 69, 686, 781, 916
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	3 cut(s)	659, 675, 962
BsmAI	GTCTC	2 cut(s)	592, 845
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	5 cut(s)	20, 69, 686, 781, 916
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	379, 678, 880
Bsp19I	CCATGG	2 cut(s)	42, 421
Bsp68I	TCGCGA	1 cut(s)	516
BspACI	CCGC	2 cut(s)	309, 966
BspANI	GGCC	5 cut(s)	20, 69, 686, 781, 916
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	427, 1025
BspMI	ACCTGC	1 cut(s)	1011
BspPI	GGATC	2 cut(s)	374, 686
BsrDI	GCAATG	6 cut(s)	57, 82, 100, 106, 133, 157
BsrI	ACTGG	1 cut(s)	932
BssECI	CCNNGG	4 cut(s)	42, 70, 383, 421
BssMI	GATC	3 cut(s)	379, 678, 880
BssT1I	CCWWGG	4 cut(s)	42, 70, 383, 421
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	3 cut(s)	119, 174, 745
Bst6I	CTCTTC	1 cut(s)	688
BstAPI	GCANNNNNTGC	1 cut(s)	1017
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	258, 847
BstDSI	CCRYGG	2 cut(s)	42, 421
BstF5I	GGATG	3 cut(s)	179, 604, 637
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	382, 681, 883
BstMAI	GTCTC	2 cut(s)	592, 845
BstMBI	GATC	3 cut(s)	379, 678, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 215, 1017
BstNI	CCWGG	1 cut(s)	918
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	916
BstSNI	TACGTA	1 cut(s)	733
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	5 cut(s)	20, 69, 686, 781, 916
BtgI	CCRYGG	2 cut(s)	42, 421
BtsCI	GGATG	3 cut(s)	179, 604, 637
BtsIMutI	CAGTG	2 cut(s)	652, 654
BtuMI	TCGCGA	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	19, 67
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	979
CviAII	CATG	7 cut(s)	43, 422, 525, 547, 619, 682, 958
CviQI	GTAC	1 cut(s)	979
DdeI	CTNAG	2 cut(s)	258, 847
DpnI	GATC	3 cut(s)	381, 680, 882
DpnII	GATC	3 cut(s)	379, 678, 880
DrdI	GACNNNNNNGTC	1 cut(s)	773
DseDI	GACNNNNNNGTC	1 cut(s)	773
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	981
Eco105I	TACGTA	1 cut(s)	733
Eco130I	CCWWGG	4 cut(s)	42, 70, 383, 421
Eco147I	AGGCCT	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	916
EcoT14I	CCWWGG	4 cut(s)	42, 70, 383, 421
ErhI	CCWWGG	4 cut(s)	42, 70, 383, 421
FaeI	CATG	7 cut(s)	46, 425, 528, 550, 622, 685, 961
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	7 cut(s)	42, 421, 524, 546, 618, 681, 957
Fnu4HI	GCNGC	2 cut(s)	310, 576
FokI	GGATG	3 cut(s)	166, 611, 644
Fsp4HI	GCNGC	2 cut(s)	310, 576
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	2 cut(s)	310, 576
HaeIII	GGCC	5 cut(s)	20, 69, 686, 781, 916
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	620
Hin1II	CATG	7 cut(s)	46, 425, 528, 550, 622, 685, 961
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	3 cut(s)	511, 585, 638
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	4 cut(s)	162, 410, 647, 993
Hpy166II	GTNNAC	2 cut(s)	610, 808
Hpy188I	TCNGA	6 cut(s)	250, 261, 457, 829, 880, 951
Hpy188III	TCNNGA	3 cut(s)	183, 515, 1038
Hpy8I	GTNNAC	2 cut(s)	610, 808
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	501, 683, 884
HpyCH4III	ACNGT	3 cut(s)	119, 174, 745
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	5 cut(s)	333, 479, 575, 1011, 1020
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 215, 1017
HpyF3I	CTNAG	2 cut(s)	258, 847
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	7 cut(s)	46, 425, 528, 550, 622, 685, 961
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	379, 678, 880
LmnI	GCTCC	2 cut(s)	425, 788
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	2 cut(s)	188, 942
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	5 cut(s)	3, 119, 168, 325, 739
MalI	GATC	3 cut(s)	381, 680, 882
MboI	GATC	3 cut(s)	379, 678, 880
MboII	GAAGA	3 cut(s)	286, 705, 806
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	3 cut(s)	164, 570, 857
MlyI	GAGTC	3 cut(s)	505, 594, 647
MmeI	TCCRAC	2 cut(s)	894, 922
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	1 cut(s)	936
MslI	CAYNNNNRTG	1 cut(s)	250
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	918
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	918
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	111, 215, 1017
NcoI	CCATGG	2 cut(s)	42, 421
NdeII	GATC	3 cut(s)	379, 678, 880
NlaIII	CATG	7 cut(s)	46, 425, 528, 550, 622, 685, 961
NlaIV	GGNNCC	2 cut(s)	427, 1025
NmuCI	GTSAC	3 cut(s)	3, 168, 325
NruI	TCGCGA	1 cut(s)	516
PceI	AGGCCT	1 cut(s)	781
PctI	GAATGC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	311, 577
PleI	GAGTC	3 cut(s)	505, 593, 646
PpsI	GAGTC	3 cut(s)	505, 593, 646
Ppu21I	YACGTR	1 cut(s)	733
PshAI	GACNNNNGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	916
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	2 cut(s)	427, 1025
PspPI	GGNCC	2 cut(s)	19, 67
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	1 cut(s)	980
RsaNI	GTAC	1 cut(s)	979
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	936
SatI	GCNGC	2 cut(s)	310, 576
Sau3AI	GATC	3 cut(s)	379, 678, 880
Sau96I	GGNCC	2 cut(s)	19, 67
SchI	GAGTC	3 cut(s)	505, 594, 647
ScrFI	CCNGG	1 cut(s)	918
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	188, 942
SmiMI	CAYNNNNRTG	1 cut(s)	250
SnaBI	TACGTA	1 cut(s)	733
Sse9I	AATT	3 cut(s)	164, 570, 857
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	309, 966
SspMI	CTAG	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	1 cut(s)	916
StyI	CCWWGG	4 cut(s)	42, 70, 383, 421
TaaI	ACNGT	3 cut(s)	119, 174, 745
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	2 cut(s)	496, 552
TasI	AATT	3 cut(s)	164, 570, 857
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	2 cut(s)	652, 661
TseFI	GTSAC	3 cut(s)	3, 168, 325
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	3 cut(s)	3, 168, 325
TspDTI	ATGAA	3 cut(s)	177, 289, 475
TspRI	CASTG	2 cut(s)	652, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1034
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.