Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

6949031 .. 6950535

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCGAAAATTAGAGTGTCATATGTATTGGTGGCTCTCTTTGTAGTTCTCATTTCCATGGAAGCCTCCATTGTTTTTGGTCAAGGCAATGGAAATGCGAATGGCAATGGAAACAAGGGGAGTGGCAACGGAAATGCGAATGGAAATGGCAACACCGGCAGTGGCAACGGAAACGCAAATGGAAATGGCAACACCGGCAGTGGCAATGGAAATGCAAATGGCAATGGTAACACCGGTAGTGGAAATGGCAGCGGGAACGGGAATGGAAACACCGGCAGTGGCAACGGGAATGGAAATGGGAATGGCAACACTGGCAGTGGCAACGGAAATGGAAATGGAAATGGCAACACAAGCAGTGGCAACGGGAATGGAAATGGAAACAGCAACACTGGCAGTGGCAACGGTAATGGAAATGGAAATGGCAATGTCAATGTCAACAGCAAGGATATTACAAACTATGACGTATTGTCACCACTACCATCGGGACAAGAGCAATGTCAATGCAAAGCATATACGGCCTGTTATTACAAGACCCTTGTGTGTCCAGCAGAATGCCCTCACAGAAAGCCCAAGAAAAACAAGAAACAAAAGGGTTGTTTCGTTAACTGCAGCAACAAGTGTGAAGTCACTTGCAAGTATAGGAAAGCCAACTGCAATGGATATGGCTCCCTCTGCTATGATCCAAGGTTTGTTGGTGGAGATGGTGTCATGTTCTACTTCCATGGAGCCAAGGGAGGAAATTTTGCCATTGTTTCGGACGAAAACCTCCAAATCAATGCACACTTCATCGGGACTCGACCAGTTGGCAGAACTCGGGATTTCACATGGGTTCAAGCCCTCTCAATCATGTTTGACACACACACTCTTGTCATTGCAGCAAAGAGGGTCTCAAAGTGGGATGACAAAGTTGATGCTCTCATGGTAAGATGGGATGATGAGGACATTAACATCCCTACCGATGGAGAAGCCGAATGGAGGACCAGCGGTGAAGATAGGGAAGTCATCATCGAAAGAACCGACGACGCGAATAATGTAAGAGTCACAGTGGCAGGGCTAGCAGAAATGGACATAAAAGTTAGGCCTATTGGAGAAGAGGAAAATAGGGTTCACAAGTACCAAATTCCAGCTGATGATACTTTTGCTCACTTGGAAACACAGTTCAGATTTTCCAATTTATCTGATCTTGTGGAAGGAGTTTTGGGAAAGACATACAGGCCAGGTTATGTTAGTCCAGTCAAGGTTGGAGTTCCAATGCCCATGATGGGTGGAGAGGACAAGTACCAAACTCCATCCCTCTTTTCAACTCTCTGCAAGGTTTGCAGGTTCCAAACTGCTACTCAATCTGATCAGTTTGCAATCACTAGTGGAGGAGTTGCTCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

462

Amino Acids

48.59

Weight (kDa)

7.46

Isoelectric Point (pI)

3.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1311
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	2 cut(s)	252, 984
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	2 cut(s)	739, 1119
AfaI	GTAC	2 cut(s)	1115, 1280
AfiI	CCNNNNNNNGG	3 cut(s)	959, 975, 1262
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	833, 1302
AhdI	GACNNNNNGTC	1 cut(s)	466
AhlI	ACTAGT	1 cut(s)	1361
AjnI	CCWGG	1 cut(s)	1216
AloI	GAACNNNNNNTCC	2 cut(s)	1142, 1174
AluBI	AGCT	1 cut(s)	1127
AluI	AGCT	1 cut(s)	1127
Alw26I	GTCTC	1 cut(s)	892
AlwI	GGATC	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	813
AoxI	GGCC	3 cut(s)	516, 1079, 1214
ApeKI	GCWGC	3 cut(s)	249, 609, 875
ApoI	RAATTY	2 cut(s)	739, 1119
AsiGI	ACCGGT	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	978
AsuHPI	GGTGA	2 cut(s)	462, 998
AsuNHI	GCTAGC	1 cut(s)	1054
AvaI	CYCGRG	1 cut(s)	813
AvaII	GGWCC	1 cut(s)	978
BbvI	GCAGC	3 cut(s)	261, 621, 887
BccI	CCATC	6 cut(s)	487, 695, 921, 953, 1255, 1297
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	1218
BclI	TGATCA	1 cut(s)	1345
BcoDI	GTCTC	1 cut(s)	892
BcuI	ACTAGT	1 cut(s)	1361
BfaI	CTAG	2 cut(s)	1055, 1362
BfmI	CTRYAG	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	1311
BisI	GCNGC	3 cut(s)	250, 610, 876
BlsI	GCNGC	3 cut(s)	251, 611, 877
Bme1390I	CCNGG	1 cut(s)	1218
Bme18I	GGWCC	1 cut(s)	978
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	978
BmiI	GGNNCC	3 cut(s)	667, 727, 1325
BmrFI	CCNGG	1 cut(s)	1218
BmsI	GCATC	1 cut(s)	901
BmtI	GCTAGC	1 cut(s)	1058
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	4 cut(s)	57, 683, 721, 729
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	959, 975, 1262
Bse118I	RCCGGY	4 cut(s)	155, 194, 233, 272
Bse1I	ACTGG	4 cut(s)	316, 394, 800, 1232
Bse3DI	GCAATG	8 cut(s)	94, 112, 211, 229, 430, 500, 661, 870
BseBI	CCWGG	1 cut(s)	1218
BseDI	CCNNGG	4 cut(s)	57, 683, 721, 729
BseGI	GGATG	4 cut(s)	904, 937, 948, 1289
BseLI	CCNNNNNNNGG	3 cut(s)	959, 975, 1262
BseMI	GCAATG	8 cut(s)	94, 112, 211, 229, 430, 500, 661, 870
BseNI	ACTGG	4 cut(s)	316, 394, 800, 1232
BseRI	GAGGAG	1 cut(s)	1383
BseXI	GCAGC	3 cut(s)	261, 621, 887
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	3 cut(s)	518, 1081, 1216
BshTI	ACCGGT	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	813
BsiSI	CCGG	4 cut(s)	156, 195, 234, 273
BslFI	GGGAC	2 cut(s)	498, 805
BslI	CCNNNNNNNGG	3 cut(s)	959, 975, 1262
BsmAI	GTCTC	1 cut(s)	892
BsmFI	GGGAC	2 cut(s)	498, 805
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	3 cut(s)	518, 1081, 1216
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	813
Bsp143I	GATC	3 cut(s)	679, 1180, 1345
Bsp19I	CCATGG	2 cut(s)	57, 721
BspACI	CCGC	2 cut(s)	252, 984
BspANI	GGCC	3 cut(s)	518, 1081, 1216
BspFNI	CGCG	1 cut(s)	1025
BspLI	GGNNCC	3 cut(s)	667, 727, 1325
BspMAI	CTGCAG	1 cut(s)	611
BspMI	ACCTGC	1 cut(s)	1311
BspOI	GCTAGC	1 cut(s)	1058
BspPI	GGATC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	8 cut(s)	94, 112, 211, 229, 430, 500, 661, 870
BsrFI	RCCGGY	4 cut(s)	155, 194, 233, 272
BsrI	ACTGG	4 cut(s)	316, 394, 800, 1232
BssAI	RCCGGY	4 cut(s)	155, 194, 233, 272
BssECI	CCNNGG	4 cut(s)	57, 683, 721, 729
BssMI	GATC	3 cut(s)	679, 1180, 1345
BssT1I	CCWWGG	4 cut(s)	57, 683, 721, 729
Bst2UI	CCWGG	1 cut(s)	1218
Bst4CI	ACNGT	3 cut(s)	404, 1045, 1158
Bst6I	CTCTTC	1 cut(s)	1086
BstAPI	GCANNNNNTGC	1 cut(s)	1317
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	1 cut(s)	1377
BstDSI	CCRYGG	2 cut(s)	57, 721
BstF5I	GGATG	4 cut(s)	904, 937, 948, 1289
BstFNI	CGCG	1 cut(s)	1025
BstKTI	GATC	3 cut(s)	682, 1183, 1348
BstMAI	GTCTC	1 cut(s)	892
BstMBI	GATC	3 cut(s)	679, 1180, 1345
BstMWI	GCNNNNNNNGC	9 cut(s)	156, 195, 312, 351, 390, 515, 672, 1055, 1317
BstNI	CCWGG	1 cut(s)	1218
BstSCI	CCNGG	1 cut(s)	1216
BstSFI	CTRYAG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	3 cut(s)	261, 621, 887
BsuRI	GGCC	3 cut(s)	518, 1081, 1216
BtgI	CCRYGG	2 cut(s)	57, 721
BtsCI	GGATG	4 cut(s)	904, 937, 948, 1289
BtsI	GCAGTG	6 cut(s)	166, 205, 283, 322, 361, 400
BtsIMutI	CAGTG	9 cut(s)	166, 205, 283, 309, 322, 361, 387, 400, 1050
BveI	ACCTGC	1 cut(s)	1311
Cac8I	GCNNGC	1 cut(s)	1056
Cfr10I	RCCGGY	4 cut(s)	155, 194, 233, 272
Cfr13I	GGNCC	1 cut(s)	978
CseI	GACGC	1 cut(s)	1031
Csp6I	GTAC	2 cut(s)	1114, 1279
CspAI	ACCGGT	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	7 cut(s)	58, 709, 722, 825, 847, 919, 1258
CviQI	GTAC	2 cut(s)	1114, 1279
DdeI	CTNAG	1 cut(s)	1377
DpnI	GATC	3 cut(s)	681, 1182, 1347
DpnII	GATC	3 cut(s)	679, 1180, 1345
DriI	GACNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	1086
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	4 cut(s)	57, 683, 721, 729
Eco147I	AGGCCT	1 cut(s)	1081
Eco31I	GGTCTC	1 cut(s)	892
Eco47I	GGWCC	1 cut(s)	978
Eco88I	CYCGRG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	1216
EcoT14I	CCWWGG	4 cut(s)	57, 683, 721, 729
ErhI	CCWWGG	4 cut(s)	57, 683, 721, 729
FaeI	CATG	7 cut(s)	61, 712, 725, 828, 850, 922, 1261
FaqI	GGGAC	2 cut(s)	498, 805
FatI	CATG	7 cut(s)	57, 708, 721, 824, 846, 918, 1257
FauI	CCCGC	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	1345
Fnu4HI	GCNGC	3 cut(s)	250, 610, 876
FokI	GGATG	4 cut(s)	911, 935, 944, 1276
Fsp4HI	GCNGC	3 cut(s)	250, 610, 876
FspBI	CTAG	2 cut(s)	1055, 1362
GluI	GCNGC	3 cut(s)	250, 610, 876
HaeIII	GGCC	3 cut(s)	518, 1081, 1216
HapII	CCGG	4 cut(s)	156, 195, 234, 273
HgaI	GACGC	1 cut(s)	1031
Hin1II	CATG	7 cut(s)	61, 712, 725, 828, 850, 922, 1261
HincII	GTYRAC	2 cut(s)	436, 604
HindII	GTYRAC	2 cut(s)	436, 604
HinfI	GANTC	2 cut(s)	793, 1038
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	4 cut(s)	156, 195, 234, 273
HphI	GGTGA	2 cut(s)	462, 998
Hpy166II	GTNNAC	3 cut(s)	436, 604, 1108
Hpy188I	TCNGA	5 cut(s)	757, 1163, 1180, 1345, 1385
Hpy188III	TCNNGA	3 cut(s)	483, 790, 815
Hpy8I	GTNNAC	3 cut(s)	436, 604, 1108
Hpy99I	CGWCG	2 cut(s)	1022, 1025
HpyAV	CCTTC	1 cut(s)	1184
HpyCH4III	ACNGT	3 cut(s)	404, 1045, 1158
HpyCH4IV	ACGT	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	9 cut(s)	156, 195, 312, 351, 390, 515, 672, 1055, 1317
HpyF3I	CTNAG	1 cut(s)	1377
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	61, 712, 725, 828, 850, 922, 1261
Ksp22I	TGATCA	1 cut(s)	1345
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	679, 1180, 1345
LmnI	GCTCC	2 cut(s)	671, 725
Lsp1109I	GCAGC	3 cut(s)	261, 621, 887
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	2 cut(s)	1055, 1362
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	4 cut(s)	227, 468, 625, 1039
MalI	GATC	3 cut(s)	681, 1182, 1347
MboI	GATC	3 cut(s)	679, 1180, 1345
MboII	GAAGA	2 cut(s)	1001, 1103
MluCI	AATT	4 cut(s)	9, 739, 1119, 1171
MlyI	GAGTC	2 cut(s)	787, 1047
MmeI	TCCRAC	1 cut(s)	1222
MseI	TTAA	2 cut(s)	603, 945
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	3 cut(s)	252, 984, 1127
MspI	CCGG	4 cut(s)	156, 195, 234, 273
MspR9I	CCNGG	1 cut(s)	1218
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	1218
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	9 cut(s)	156, 195, 312, 351, 390, 515, 672, 1055, 1317
NcoI	CCATGG	2 cut(s)	57, 721
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	3 cut(s)	679, 1180, 1345
NheI	GCTAGC	1 cut(s)	1054
NlaIII	CATG	7 cut(s)	61, 712, 725, 828, 850, 922, 1261
NlaIV	GGNNCC	3 cut(s)	667, 727, 1325
NmuCI	GTSAC	3 cut(s)	468, 625, 1039
PceI	AGGCCT	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	557
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	251, 611, 877
PleI	GAGTC	2 cut(s)	787, 1046
PpsI	GAGTC	2 cut(s)	787, 1046
Psp6I	CCWGG	1 cut(s)	1216
PspGI	CCWGG	1 cut(s)	1216
PspN4I	GGNNCC	3 cut(s)	667, 727, 1325
PspPI	GGNCC	1 cut(s)	978
PstI	CTGCAG	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	2 cut(s)	1115, 1280
RsaNI	GTAC	2 cut(s)	1114, 1279
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	603, 945
SatI	GCNGC	3 cut(s)	250, 610, 876
Sau3AI	GATC	3 cut(s)	679, 1180, 1345
Sau96I	GGNCC	1 cut(s)	978
SchI	GAGTC	2 cut(s)	787, 1047
ScrFI	CCNGG	1 cut(s)	1218
SetI	ASST	8 cut(s)	465, 689, 768, 1129, 1222, 1242, 1317, 1325
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	607
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	1361
Sse9I	AATT	4 cut(s)	9, 739, 1119, 1171
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	2 cut(s)	252, 984
SspMI	CTAG	2 cut(s)	1055, 1362
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	1 cut(s)	1216
StyI	CCWWGG	4 cut(s)	57, 683, 721, 729
TaaI	ACNGT	3 cut(s)	404, 1045, 1158
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	796, 1008
TasI	AATT	4 cut(s)	9, 739, 1119, 1171
Tru1I	TTAA	2 cut(s)	603, 945
Tru9I	TTAA	2 cut(s)	603, 945
TscAI	CASTG	9 cut(s)	166, 205, 283, 316, 322, 361, 394, 400, 1050
TseFI	GTSAC	3 cut(s)	468, 625, 1039
TseI	GCWGC	3 cut(s)	249, 609, 875
Tsp45I	GTSAC	3 cut(s)	468, 625, 1039
TspDTI	ATGAA	1 cut(s)	775
TspGWI	ACGGA	3 cut(s)	144, 183, 339
TspRI	CASTG	9 cut(s)	166, 205, 283, 316, 322, 361, 394, 400, 1050
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	2 cut(s)	739, 1119
XspI	CTAG	2 cut(s)	1055, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.