Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000660.1

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

227104 .. 228680

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000660.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggaagcctctgttgtttttggtcaagccaatggcaatggaaatgctaatggaaacggcaacactggcagtggcaacggaaatgccaacggcaatggcaacacgggcagtggcaacggaaatgggaacggcaatggcaacactggcagtggcaacggcaatgggaatgggaacggcgacactggcagtggcaatggcaacgggaatgggaacggcaatactggcagtggcaacggaaacgggaatgggaacggcaatactggcagtggcaacggaaacgggaatgggaacggcaatactggcagtggcaacggaaacgggaatgggaacggcaatactggcagtggcaacggaaacgggaatgggaacggcaatactggcagtggcaacggaaacgggaatggaaacggcaacgggaatggcaatggcaatggaaacggaaacgggaatgggaacggaaatcaagttaatgctgatgttacaaactaccaggtattgtcaccactagcaaccggacaagagagatgcatgtgcaaagctcagggcacctgtttctacaagacccttgtctgtccaccggagtgccctcagagaaagcctaagcagaacaagaaacacaagggctgcttcgtcaactgcggcagcaagtgtgaagtcacctgcaagtttagaagagccaactgtaatgggtatggttctctctgctatgatcctcgatttgttggtggagatggtgttatgttctacttccatggagccaagggagtaaactttgccattgtttcagatgataacctccagatcaatgcacacttcattgggactcgaccactaggaaggactcgcgacttcacatgggttcaagccctctcaatcatgttcgacaatcacaaccttgtcattgcagcgaagaaagtctcaaagtgggctgacaaagttgatgctctcatcgtaaggtgggatggcgagtcggttagcattcctactgatggagaagccgaatggaggactaatggtgatcaacaacgacaggtaatagtggaaagaaccgatgatactaacaacgtaagagttacagttgcagggctactggaaatggacataaagattaggcctattggagaagaagaaaacaaggttcataagtatcaaataccagctgatgatacttttgctcacttggaaacacagttcagattttccaacttatctgatcttgtcgaaggagttttgggcaagacttataggccaggttatgttagtccagtcaaggttggagttccaatgccgacgatgggtggggaggacaagtacagaactccttcactgttctcacctctctgcaaggtttgcaggttccaaactactagtcaatcttcagggtttgatatcacaagtggaggagtggcatcatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

472

Amino Acids

48.72

Weight (kDa)

8.16

Isoelectric Point (pI)

-6.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	2 cut(s)	668, 1344
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	1 cut(s)	846
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	1362
AfaI	GTAC	1 cut(s)	1313
AfiI	CCNNNNNNNGG	3 cut(s)	989, 1005, 1295
AgsI	TTSAA	1 cut(s)	863
AhlI	ACTAGT	1 cut(s)	1367
AjnI	CCWGG	2 cut(s)	489, 1249
AleI	CACNNNNGTG	1 cut(s)	580
AloI	GAACNNNNNNTCC	2 cut(s)	1175, 1207
AluBI	AGCT	2 cut(s)	539, 1160
AluI	AGCT	2 cut(s)	539, 1160
Alw26I	GTCTC	1 cut(s)	922
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	2 cut(s)	1112, 1247
ApeKI	GCWGC	3 cut(s)	624, 642, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	1354, 1386
Asp700I	GAANNNNTTC	1 cut(s)	1321
AsuHPI	GGTGA	4 cut(s)	492, 649, 1028, 1326
BaeGI	GKGCMC	2 cut(s)	548, 587
BanI	GGYRCC	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	611, 654, 917
BccI	CCATC	4 cut(s)	725, 956, 983, 1288
BciT130I	CCWGG	2 cut(s)	491, 1251
BclI	TGATCA	1 cut(s)	1018
BcoDI	GTCTC	1 cut(s)	922
BcuI	ACTAGT	1 cut(s)	1367
BfaI	CTAG	3 cut(s)	506, 833, 1368
BfuAI	ACCTGC	2 cut(s)	668, 1344
BisI	GCNGC	4 cut(s)	625, 640, 643, 906
BlsI	GCNGC	4 cut(s)	626, 641, 644, 907
Bme1390I	CCNGG	2 cut(s)	491, 1251
BmiI	GGNNCC	3 cut(s)	547, 757, 1358
BmrFI	CCNGG	2 cut(s)	491, 1251
BmsI	GCATC	2 cut(s)	515, 931
BoxI	GACNNNNGTC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	782
Bpu10I	CCTNAGC	2 cut(s)	540, 600
BsaJI	CCNNGG	2 cut(s)	751, 759
BsaWI	WCCGGW	2 cut(s)	512, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	720, 750, 1295, 1325
Bsc4I	CCNNNNNNNGG	3 cut(s)	989, 1005, 1295
Bse3DI	GCAATG	8 cut(s)	43, 100, 139, 166, 199, 430, 436, 900
BseBI	CCWGG	2 cut(s)	491, 1251
BseDI	CCNNGG	2 cut(s)	751, 759
BseGI	GGATG	1 cut(s)	967
BseLI	CCNNNNNNNGG	3 cut(s)	989, 1005, 1295
BseMI	GCAATG	8 cut(s)	43, 100, 139, 166, 199, 430, 436, 900
BseMII	CTCAG	2 cut(s)	554, 602
BseRI	GAGGAG	1 cut(s)	1416
BseSI	GKGCMC	2 cut(s)	548, 587
BseXI	GCAGC	3 cut(s)	611, 654, 917
Bsh1236I	CGCG	1 cut(s)	846
BshFI	GGCC	2 cut(s)	1114, 1249
BshNI	GGYRCC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	513, 578
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	3 cut(s)	989, 1005, 1295
BsmAI	GTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	1 cut(s)	978
BsnI	GGCC	2 cut(s)	1114, 1249
Bsp1286I	GDGCHC	2 cut(s)	548, 587
Bsp143I	GATC	4 cut(s)	709, 801, 1018, 1213
Bsp19I	CCATGG	1 cut(s)	751
Bsp68I	TCGCGA	1 cut(s)	846
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	2 cut(s)	1114, 1249
BspCNI	CTCAG	2 cut(s)	553, 601
BspFNI	CGCG	1 cut(s)	846
BspLI	GGNNCC	3 cut(s)	547, 757, 1358
BspMI	ACCTGC	2 cut(s)	668, 1344
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	667
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	8 cut(s)	43, 100, 139, 166, 199, 430, 436, 900
BssECI	CCNNGG	2 cut(s)	751, 759
BssMI	GATC	4 cut(s)	709, 801, 1018, 1213
BssT1I	CCWWGG	2 cut(s)	751, 759
Bst2UI	CCWGG	2 cut(s)	491, 1251
Bst4CI	ACNGT	4 cut(s)	683, 1078, 1191, 1329
Bst6I	CTCTTC	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	1350
BstDEI	CTNAG	3 cut(s)	540, 588, 600
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	1 cut(s)	967
BstFNI	CGCG	1 cut(s)	846
BstKTI	GATC	4 cut(s)	712, 804, 1021, 1216
BstMAI	GTCTC	1 cut(s)	922
BstMBI	GATC	4 cut(s)	709, 801, 1018, 1213
BstNI	CCWGG	2 cut(s)	491, 1251
BstNSI	RCATGY	1 cut(s)	532
BstPAI	GACNNNNGTC	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	489, 1249
BstSLI	GKGCMC	2 cut(s)	548, 587
BstUI	CGCG	1 cut(s)	846
BstV1I	GCAGC	3 cut(s)	611, 654, 917
BsuRI	GGCC	2 cut(s)	1114, 1249
BtgI	CCRYGG	1 cut(s)	751
BtsCI	GGATG	1 cut(s)	967
BtsI	GCAGTG	9 cut(s)	76, 115, 154, 193, 232, 271, 310, 349, 388
BtuMI	TCGCGA	1 cut(s)	846
BveI	ACCTGC	2 cut(s)	668, 1344
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	1312
CviAII	CATG	4 cut(s)	529, 752, 855, 877
CviQI	GTAC	1 cut(s)	1312
DdeI	CTNAG	3 cut(s)	540, 588, 600
DpnI	GATC	4 cut(s)	711, 803, 1020, 1215
DpnII	GATC	4 cut(s)	709, 801, 1018, 1213
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	751, 759
Eco147I	AGGCCT	1 cut(s)	1114
Eco32I	GATATC	1 cut(s)	1390
Eco57I	CTGAAG	1 cut(s)	1362
EcoRII	CCWGG	2 cut(s)	489, 1249
EcoRV	GATATC	1 cut(s)	1390
EcoT14I	CCWWGG	2 cut(s)	751, 759
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	751, 759
FaeI	CATG	4 cut(s)	532, 755, 858, 880
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	4 cut(s)	528, 751, 854, 876
FbaI	TGATCA	1 cut(s)	1018
Fnu4HI	GCNGC	4 cut(s)	625, 640, 643, 906
FokI	GGATG	1 cut(s)	974
Fsp4HI	GCNGC	4 cut(s)	625, 640, 643, 906
FspBI	CTAG	3 cut(s)	506, 833, 1368
GluI	GCNGC	4 cut(s)	625, 640, 643, 906
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	1114, 1249
HapII	CCGG	2 cut(s)	513, 578
Hin1II	CATG	4 cut(s)	532, 755, 858, 880
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	3 cut(s)	823, 841, 968
HpaII	CCGG	2 cut(s)	513, 578
HphI	GGTGA	4 cut(s)	492, 649, 1028, 1326
Hpy166II	GTNNAC	3 cut(s)	575, 634, 769
Hpy188I	TCNGA	4 cut(s)	591, 787, 1196, 1213
Hpy188III	TCNNGA	2 cut(s)	799, 845
Hpy8I	GTNNAC	3 cut(s)	575, 634, 769
Hpy99I	CGWCG	1 cut(s)	1294
HpyAV	CCTTC	3 cut(s)	831, 1217, 1332
HpyCH4III	ACNGT	4 cut(s)	683, 1078, 1191, 1329
HpyCH4IV	ACGT	1 cut(s)	1065
HpyCH4V	TGCA	8 cut(s)	528, 534, 663, 809, 905, 1082, 1344, 1353
HpyF3I	CTNAG	3 cut(s)	540, 588, 600
HpySE526I	ACGT	1 cut(s)	1065
Hsp92II	CATG	4 cut(s)	532, 755, 858, 880
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	4 cut(s)	709, 801, 1018, 1213
LguI	GCTCTTC	1 cut(s)	667
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	3 cut(s)	611, 654, 917
LweI	GCATC	2 cut(s)	515, 931
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	3 cut(s)	506, 833, 1368
MaeII	ACGT	1 cut(s)	1065
MaeIII	GTNAC	4 cut(s)	478, 498, 655, 1072
MalI	GATC	4 cut(s)	711, 803, 1020, 1215
MboI	GATC	4 cut(s)	709, 801, 1018, 1213
MboII	GAAGA	5 cut(s)	684, 922, 1136, 1139, 1368
MhlI	GDGCHC	2 cut(s)	548, 587
MlyI	GAGTC	3 cut(s)	817, 835, 977
MmeI	TCCRAC	2 cut(s)	1227, 1255
MnlI	CCTC	9 cut(s)	19, 597, 723, 806, 878, 999, 1297, 1347, 1394
Mph1103I	ATGCAT	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	1321
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	2 cut(s)	513, 578
MspR9I	CCNGG	2 cut(s)	491, 1251
Mva1269I	GAATGC	1 cut(s)	978
MvaI	CCWGG	2 cut(s)	491, 1251
MvnI	CGCG	1 cut(s)	846
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	4 cut(s)	709, 801, 1018, 1213
NlaIII	CATG	4 cut(s)	532, 755, 858, 880
NlaIV	GGNNCC	3 cut(s)	547, 757, 1358
NmuCI	GTSAC	2 cut(s)	498, 655
NruI	TCGCGA	1 cut(s)	846
NsiI	ATGCAT	1 cut(s)	530
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	580
PaqCI	CACCTGC	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	1114
PciSI	GCTCTTC	1 cut(s)	667
PctI	GAATGC	1 cut(s)	978
PdmI	GAANNNNTTC	1 cut(s)	1321
PkrI	GCNGC	4 cut(s)	626, 641, 644, 907
PleI	GAGTC	3 cut(s)	817, 835, 976
PpsI	GAGTC	3 cut(s)	817, 835, 976
PshAI	GACNNNNGTC	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	489, 1249
PspGI	CCWGG	2 cut(s)	489, 1249
PspN4I	GGNNCC	3 cut(s)	547, 757, 1358
PsrI	GAACNNNNNNTAC	2 cut(s)	1039, 1071
PvuII	CAGCTG	1 cut(s)	1160
RruI	TCGCGA	1 cut(s)	846
RsaI	GTAC	1 cut(s)	1313
RsaNI	GTAC	1 cut(s)	1312
RseI	CAYNNNNRTG	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	667
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	625, 640, 643, 906
Sau3AI	GATC	4 cut(s)	709, 801, 1018, 1213
SchI	GAGTC	3 cut(s)	817, 835, 977
ScrFI	CCNGG	2 cut(s)	491, 1251
SduI	GDGCHC	2 cut(s)	548, 587
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	515, 931
SmiMI	CAYNNNNRTG	1 cut(s)	580
SpeI	ACTAGT	1 cut(s)	1367
SseBI	AGGCCT	1 cut(s)	1114
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	3 cut(s)	506, 833, 1368
StuI	AGGCCT	1 cut(s)	1114
StyD4I	CCNGG	2 cut(s)	489, 1249
StyI	CCWWGG	2 cut(s)	751, 759
TaaI	ACNGT	4 cut(s)	683, 1078, 1191, 1329
TaiI	ACGT	1 cut(s)	1068
TaqI	TCGA	4 cut(s)	715, 826, 882, 1221
TatI	WGTACW	1 cut(s)	1311
TauI	GCSGC	1 cut(s)	642
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	2 cut(s)	498, 655
TseI	GCWGC	3 cut(s)	624, 642, 905
Tsp45I	GTSAC	2 cut(s)	498, 655
TspDTI	ATGAA	2 cut(s)	805, 1130
TspGWI	ACGGA	9 cut(s)	93, 132, 249, 288, 327, 366, 405, 453, 471
XceI	RCATGY	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	1321
XspI	CTAG	3 cut(s)	506, 833, 1368
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.