Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

6965070 .. 6966803

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G100000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCAAAATTAAAAGCGTCTTATATATTAATGGCTCTCTTTGTGGTGCTCATTGCTATGGAAGCCACATCTGTTCAAGGCCAAGGCAATGGAAATGGCAATGGCAACGGCAACACTGGCAGTGGCAACGGAAATGGGAATGGTAATGGCAACACTGGCAGCGGCAACGGAAACGGCAATGGTAATGGCAATGGCAACACCGGGAGTGGCAACGGCAACGGTAATGGTAATGGCAATGGGAATGGAAACGGCAATGGGAATGGTAATGGAAACGGAAATGGTAATGGAAATAGTGGAAATGGCAACGGTAATGGCAATGGCAATGGCAACGGCAATGGCAATGGAGGCAATGGCAACGGAAGTGGCAACGGCAACGGGAATGGCAATGGTGGCAATGGAGTCAATGACAGTACAAACTACGACGTATTGCCACCACTAGAATCTGGACAGGAGCGGTGCCAGTGCAAAGCACTAGGGGCCTGTTTCTACAAGACCCTTGTATGTCCACCAGAATGCCCTCAGAGAAAGCCCAAAAACAACAAGAAAGAAAAGGGTTGCTTCGTTAACTGCGGTAGCAGCTGTGAAGTCACTTGCAAGGTTAGAAGAAACAACTGTGACGGCTATGGCTCTATCTGCTACGACCCTCGGTTTATTGGTGGTGATGGTGTCATGTTCTACTTCCATGGAGCCAAGGGAGGAAACTTTGCCATTGTCTCAGACGATAACCTCCAAATCAATGCACACTTCATTGGGACTCGACCACAAGGAAGGACTCGCGATTTCACATGGATTCAGGCCATCTCAGTGATGTTTGACACTCACACCCTTGTCATTGCAGCAAAAAGGGTCTCAAAGTGGGATGACAAAGTTGATGCTCTCATGGTAAAGTGGGATGGTGAGACCATTAGCATTCCAACTAATGGAGAAGCCGAATGGAGGACTAGCGACGAAAACAGAGAGGTGATAGTCGAAAGAACCGATGACACTAACTATGTAAGAGTTATAGTGACCGGGATCGTGGACATAGCCATTAGGGTTAGGCCTATTGGAGAAAAAGAAGACAGAGTTCATCACTACCATATACCAGATGATGATACTTTTGCTCACTTGGAGACACAATTCTCATTCTCCAATTTGTCTCCTCTTGTTGAAGGAGTTTTGGGAAAGACTTACAGGCCAGGCTATGTTAGTCCAGTGAAGAGAGGAGTTCCAATGCCATTGATGGGTGGGGAAGACAAGTATAAAACTCCATCACTCTTTTCACCTCTCTGCAAGGTGTGCAGGTTCCAAACTACTACTCAATCTGCAGGGCTTGCAATTACAAGTGAAGGACTTGGTGATCAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

450

Amino Acids

47.15

Weight (kDa)

6.66

Isoelectric Point (pI)

2.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1272
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	454
AccII	CGCG	1 cut(s)	777
AciI	CCGC	3 cut(s)	162, 454, 570
AclWI	GGATC	1 cut(s)	1022
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	920, 936, 1223
AgsI	TTSAA	2 cut(s)	77, 1151
AjnI	CCWGG	1 cut(s)	1177
AluBI	AGCT	1 cut(s)	579
AluI	AGCT	1 cut(s)	579
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	5 cut(s)	718, 853, 893, 1106, 1143
AlwI	GGATC	1 cut(s)	1022
AoxI	GGCC	5 cut(s)	79, 477, 795, 1040, 1175
ApeKI	GCWGC	3 cut(s)	159, 576, 836
AseI	ATTAAT	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	2 cut(s)	202, 1012
AsuHPI	GGTGA	5 cut(s)	671, 908, 973, 1254, 1349
BanI	GGYRCC	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	1065, 1239
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	171, 588, 848
BccI	CCATC	5 cut(s)	656, 806, 887, 1216, 1258
BceAI	ACGGC	7 cut(s)	124, 190, 229, 265, 346, 385, 634
BciT130I	CCWGG	1 cut(s)	1179
BclI	TGATCA	1 cut(s)	1339
BcnI	CCSGG	2 cut(s)	202, 1012
BcoDI	GTCTC	5 cut(s)	718, 853, 893, 1106, 1143
BfaI	CTAG	3 cut(s)	437, 473, 942
BfmI	CTRYAG	1 cut(s)	1305
BfuAI	ACCTGC	1 cut(s)	1272
BisI	GCNGC	4 cut(s)	160, 163, 577, 837
BlsI	GCNGC	4 cut(s)	161, 164, 578, 838
Bme1390I	CCNGG	3 cut(s)	202, 1012, 1179
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	4 cut(s)	458, 478, 688, 1286
BmrFI	CCNGG	3 cut(s)	202, 1012, 1179
BmsI	GCATC	1 cut(s)	862
BpiI	GAAGAC	2 cut(s)	1065, 1239
BpuMI	CCSGG	2 cut(s)	202, 1012
BsaI	GGTCTC	2 cut(s)	853, 893
BsaJI	CCNNGG	4 cut(s)	82, 644, 682, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	920, 936, 1223
Bse1I	ACTGG	4 cut(s)	121, 160, 460, 1193
BseBI	CCWGG	1 cut(s)	1179
BseDI	CCNNGG	4 cut(s)	82, 644, 682, 690
BseGI	GGATG	2 cut(s)	865, 898
BseLI	CCNNNNNNNGG	3 cut(s)	920, 936, 1223
BseMII	CTCAG	3 cut(s)	533, 729, 816
BseNI	ACTGG	4 cut(s)	121, 160, 460, 1193
BseRI	GAGGAG	2 cut(s)	1131, 1218
BseXI	GCAGC	3 cut(s)	171, 588, 848
BsgI	GTGCAG	1 cut(s)	1300
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	5 cut(s)	81, 479, 797, 1042, 1177
BshNI	GGYRCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	201, 1011
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	3 cut(s)	920, 936, 1223
BsmAI	GTCTC	5 cut(s)	718, 853, 893, 1106, 1143
BsmFI	GGGAC	1 cut(s)	766
BsmI	GAATGC	2 cut(s)	518, 909
BsnI	GGCC	5 cut(s)	81, 479, 797, 1042, 1177
Bso31I	GGTCTC	2 cut(s)	853, 893
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	1014, 1339
Bsp19I	CCATGG	1 cut(s)	682
Bsp68I	TCGCGA	1 cut(s)	777
BspACI	CCGC	3 cut(s)	162, 454, 570
BspANI	GGCC	5 cut(s)	81, 479, 797, 1042, 1177
BspCNI	CTCAG	3 cut(s)	532, 728, 815
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	458, 478, 688, 1286
BspMAI	CTGCAG	1 cut(s)	1309
BspMI	ACCTGC	1 cut(s)	1272
BspPI	GGATC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	2 cut(s)	853, 893
BsrBI	CCGCTC	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	121, 160, 460, 1193
BssECI	CCNNGG	4 cut(s)	82, 644, 682, 690
BssMI	GATC	2 cut(s)	1014, 1339
BssT1I	CCWWGG	3 cut(s)	82, 682, 690
Bst2UI	CCWGG	1 cut(s)	1179
Bst4CI	ACNGT	4 cut(s)	221, 308, 410, 614
Bst6I	CTCTTC	1 cut(s)	1193
BstAPI	GCANNNNNTGC	2 cut(s)	1278, 1313
BstC8I	GCNNGC	1 cut(s)	1314
BstDEI	CTNAG	3 cut(s)	519, 715, 802
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	865, 898
BstFNI	CGCG	1 cut(s)	777
BstKTI	GATC	2 cut(s)	1017, 1342
BstMAI	GTCTC	5 cut(s)	718, 853, 893, 1106, 1143
BstMBI	GATC	2 cut(s)	1014, 1339
BstNI	CCWGG	1 cut(s)	1179
BstSCI	CCNGG	3 cut(s)	200, 1010, 1177
BstSFI	CTRYAG	1 cut(s)	1305
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	3 cut(s)	171, 588, 848
BstV2I	GAAGAC	2 cut(s)	1065, 1239
BstXI	CCANNNNNNTGG	1 cut(s)	89
BsuRI	GGCC	5 cut(s)	81, 479, 797, 1042, 1177
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	865, 898
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	6 cut(s)	114, 127, 153, 467, 810, 1200
BtuMI	TCGCGA	1 cut(s)	777
BveI	ACCTGC	1 cut(s)	1272
Cac8I	GCNNGC	1 cut(s)	1314
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	4 cut(s)	670, 683, 786, 880
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	519, 715, 802
DpnI	GATC	2 cut(s)	1016, 1341
DpnII	GATC	2 cut(s)	1014, 1339
Eam1104I	CTCTTC	1 cut(s)	1193
EarI	CTCTTC	1 cut(s)	1193
Eco130I	CCWWGG	3 cut(s)	82, 682, 690
Eco147I	AGGCCT	1 cut(s)	1042
Eco31I	GGTCTC	2 cut(s)	853, 893
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	1177
EcoT14I	CCWWGG	3 cut(s)	82, 682, 690
ErhI	CCWWGG	3 cut(s)	82, 682, 690
FaeI	CATG	4 cut(s)	673, 686, 789, 883
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	4 cut(s)	669, 682, 785, 879
FbaI	TGATCA	1 cut(s)	1339
Fnu4HI	GCNGC	4 cut(s)	160, 163, 577, 837
FokI	GGATG	2 cut(s)	872, 905
Fsp4HI	GCNGC	4 cut(s)	160, 163, 577, 837
FspBI	CTAG	3 cut(s)	437, 473, 942
GluI	GCNGC	4 cut(s)	160, 163, 577, 837
HaeIII	GGCC	5 cut(s)	81, 479, 797, 1042, 1177
HapII	CCGG	2 cut(s)	201, 1011
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	673, 686, 789, 883
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	5 cut(s)	399, 440, 754, 772, 790
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	201, 1011
HphI	GGTGA	5 cut(s)	671, 908, 973, 1254, 1349
Hpy166II	GTNNAC	3 cut(s)	506, 565, 1021
Hpy188I	TCNGA	2 cut(s)	522, 718
Hpy188III	TCNNGA	2 cut(s)	444, 776
Hpy8I	GTNNAC	3 cut(s)	506, 565, 1021
Hpy99I	CGWCG	2 cut(s)	425, 950
HpyAV	CCTTC	3 cut(s)	762, 1145, 1322
HpyCH4III	ACNGT	4 cut(s)	221, 308, 410, 614
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	8 cut(s)	465, 594, 740, 836, 1272, 1281, 1307, 1316
HpyF3I	CTNAG	3 cut(s)	519, 715, 802
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	673, 686, 789, 883
Ksp22I	TGATCA	1 cut(s)	1339
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	1014, 1339
LmnI	GCTCC	2 cut(s)	451, 686
Lsp1109I	GCAGC	3 cut(s)	171, 588, 848
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	3 cut(s)	437, 473, 942
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	586, 614, 1006
MalI	GATC	2 cut(s)	1016, 1341
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	2 cut(s)	1014, 1339
MboII	GAAGA	4 cut(s)	615, 1070, 1210, 1244
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	8, 1118, 1132, 1317
MlyI	GAGTC	3 cut(s)	408, 748, 766
MmeI	TCCRAC	1 cut(s)	938
MseI	TTAA	3 cut(s)	11, 29, 564
MslI	CAYNNNNRTG	3 cut(s)	56, 511, 803
MspA1I	CMGCKG	2 cut(s)	162, 579
MspI	CCGG	2 cut(s)	201, 1011
MspR9I	CCNGG	3 cut(s)	202, 1012, 1179
Mva1269I	GAATGC	2 cut(s)	518, 909
MvaI	CCWGG	1 cut(s)	1179
MvnI	CGCG	1 cut(s)	777
NciI	CCSGG	2 cut(s)	202, 1012
NcoI	CCATGG	1 cut(s)	682
NdeII	GATC	2 cut(s)	1014, 1339
NlaIII	CATG	4 cut(s)	673, 686, 789, 883
NlaIV	GGNNCC	4 cut(s)	458, 478, 688, 1286
NmuCI	GTSAC	3 cut(s)	586, 614, 1006
NruI	TCGCGA	1 cut(s)	777
PceI	AGGCCT	1 cut(s)	1042
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PctI	GAATGC	2 cut(s)	518, 909
PfeI	GAWTC	2 cut(s)	440, 790
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	4 cut(s)	161, 164, 578, 838
PleI	GAGTC	3 cut(s)	407, 748, 766
PpsI	GAGTC	3 cut(s)	407, 748, 766
PshBI	ATTAAT	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	1177
PspGI	CCWGG	1 cut(s)	1177
PspN4I	GGNNCC	4 cut(s)	458, 478, 688, 1286
PspPI	GGNCC	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	1309
PvuII	CAGCTG	1 cut(s)	579
RruI	TCGCGA	1 cut(s)	777
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	3 cut(s)	56, 511, 803
SaqAI	TTAA	3 cut(s)	11, 29, 564
SatI	GCNGC	4 cut(s)	160, 163, 577, 837
Sau3AI	GATC	2 cut(s)	1014, 1339
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	3 cut(s)	408, 748, 766
ScrFI	CCNGG	3 cut(s)	202, 1012, 1179
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	426, 581, 600, 729, 963, 1267, 1278, 1286
SfaNI	GCATC	1 cut(s)	862
SfcI	CTRYAG	1 cut(s)	1305
SmiMI	CAYNNNNRTG	3 cut(s)	56, 511, 803
Sse9I	AATT	4 cut(s)	8, 1118, 1132, 1317
SseBI	AGGCCT	1 cut(s)	1042
SsiI	CCGC	3 cut(s)	162, 454, 570
SspMI	CTAG	3 cut(s)	437, 473, 942
StuI	AGGCCT	1 cut(s)	1042
StyD4I	CCNGG	3 cut(s)	200, 1010, 1177
StyI	CCWWGG	3 cut(s)	82, 682, 690
TaaI	ACNGT	4 cut(s)	221, 308, 410, 614
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	757, 969
TasI	AATT	4 cut(s)	8, 1118, 1132, 1317
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	440, 790
Tru1I	TTAA	3 cut(s)	11, 29, 564
Tru9I	TTAA	3 cut(s)	11, 29, 564
TscAI	CASTG	6 cut(s)	121, 127, 160, 467, 810, 1200
TseFI	GTSAC	3 cut(s)	586, 614, 1006
TseI	GCWGC	3 cut(s)	159, 576, 836
Tsp45I	GTSAC	3 cut(s)	586, 614, 1006
TspDTI	ATGAA	2 cut(s)	736, 1058
TspGWI	ACGGA	4 cut(s)	144, 183, 288, 372
TspRI	CASTG	6 cut(s)	121, 127, 160, 467, 810, 1200
Van91I	CCANNNNNTGG	1 cut(s)	920
VspI	ATTAAT	1 cut(s)	29
XspI	CTAG	3 cut(s)	437, 473, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.