Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029706.1

Orthogroup ID

OG0002778

Physical Location & Seq

Genomic Coordinates Reverse (-)

5266 .. 6852

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029706.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atggctaaactgagagtgtcttttgtgttggtggctgtcgctgtggtgcttattgccatggaagccagctctgttctgggtcaaggcagtggaaacggaaatgggaatgggaatggcaacactggcagtggcaatggaaatgggaacggcaatggcaacactggcagtggcaacgggaatgggaacggcaatggcaacactggcagtggcaacgggaatgggaacgggaatggcaacactggcagtggcaacggcaacggaaatgggaacggcaacggcaacggaaacggaaatggtaatggcaatggtaacggaaatggcaatggcaacgggaatggtaacggcaatgcaattagtgacagcacgaactacgacgtattgccaccactagcgacgggacaggagcaatgcatgtgcaaagcgcagggagcctgtttctacaagacgcttgtttgtccaccagaatgccccgagagaaagcccaaaaacaacaagaaaaaaaagggttgcttcgttaactgcggaagcaagtgtgaagtcacttgcaaaattagaagaggcaactgtgatggttatggatctatctgctacgaccctcgatttatcggtggtgatggtgtaatgttctacttccatggagtcaagggaggaaactttgccattgtctcggatgaaaaactccacatcaacgcacatttcattgggactcgaccagaaggaaggactcgtgacttcacatggattcaagcaatctcaatcatgttcgacagtcacacccttgttattggagcaaagagggtttccaagtggaatgacaaagttgatgctctcatggtgaagtgggatagtgagtcagttgacatccctgaatatggtggggccgaatggaggactaatggtgaggacagagaggtaatcatcgaaagaaccgatgatgcgaactatgcaagagttacggtctctgatttggtcgacataaccattagggttaggcctattggagaaaaggaagacagggttcatcattaccatataccagttgatgatacttttgctcacttggagacacagttcacattttcgaaattatctgatctggtggaaggagttctagggaagacctataggccaggctatgttagtcgagtcaagagaggagttccaatgccattgatgggtggagaggataagtacaaaactccatcactcttttcacctatctgcaaggtttgtaggtttcaaactactgctcgtcaatctggtgggcttgcaattacaaccggagtggctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

431

Amino Acids

45.47

Weight (kDa)

8.48

Isoelectric Point (pI)

9.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60520
fragaria_vesca	FvH4_3g32600 FvH4_3g32610 FvH4_3g32620
malus_domestica	MD03G1114100.v1.1 MD11G1133500.v1.1
prunus_persica	Prupe.6G099800_v2.0.a1 Prupe.6G099900_v2.0.a1 Prupe.6G100000_v2.0.a1
pyrus_communis	pycom11g11020
rosa_chinensis	RchiOBHm_Chr5g0059651 RchiOBHm_Chr5g0059671 RchiOBHm_Chr5g0059691
rosa_laevigata	RLG00000035318 RLG00000035319 RLG00000035320
rosa_multiflora	Rmu_sc0000660.1_g000046 Rmu_sc0000660.1_g000048 Rmu_sc0029706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020940 Rroxscaffold_1G00020950
rosa_rugosa	Rorug05G0323900 Rorug05G0324000 Rorug05G0324100
rosa_samantha	Rh5AG389300 Rh5AG389500 Rh5AG389600 Rh5BG400900 Rh5BG401100 Rh5BG401200 Rh5CG425000 Rh5CG425200 Rh5CG425300 Rh5DG417400 Rh5DG417500 Rh5DG417600
rosa_wichuraiana	Rw5G036640 Rw5G036650 Rw5G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	586
AfaI	GTAC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	3 cut(s)	872, 888, 1175
AgsI	TTSAA	2 cut(s)	746, 1241
AjnI	CCWGG	1 cut(s)	1129
AloI	GAACNNNNNNTCC	2 cut(s)	1055, 1087
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	670, 964, 1058
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	879, 992, 1127
ApeKI	GCWGC	1 cut(s)	1289
Asp700I	GAANNNNTTC	1 cut(s)	1107
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	879
AsuHPI	GGTGA	4 cut(s)	623, 847, 911, 1206
AsuII	TTCGAA	1 cut(s)	1082
AvaI	CYCGRG	1 cut(s)	470
BauI	CACGAG	1 cut(s)	726
BbsI	GAAGAC	2 cut(s)	1017, 1124
BbvI	GCAGC	1 cut(s)	1276
BccI	CCATC	4 cut(s)	563, 608, 1168, 1210
BceAI	ACGGC	6 cut(s)	163, 202, 268, 286, 292, 358
BciT130I	CCWGG	1 cut(s)	1131
BcoDI	GTCTC	3 cut(s)	670, 964, 1058
BfaI	CTAG	2 cut(s)	389, 1112
BfmI	CTRYAG	1 cut(s)	1123
BisI	GCNGC	1 cut(s)	1290
BlsI	GCNGC	1 cut(s)	1291
Bme1390I	CCNGG	1 cut(s)	1131
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	2 cut(s)	430, 880
BmrFI	CCNGG	1 cut(s)	1131
BmsI	GCATC	2 cut(s)	814, 925
BpiI	GAAGAC	2 cut(s)	1017, 1124
Bpu14I	TTCGAA	1 cut(s)	1082
BsaI	GGTCTC	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	57, 634
BsaWI	WCCGGW	1 cut(s)	1280
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	3 cut(s)	872, 888, 1175
Bse1I	ACTGG	5 cut(s)	127, 166, 205, 244, 1037
Bse3DI	GCAATG	7 cut(s)	139, 157, 196, 310, 328, 352, 413
BseBI	CCWGG	1 cut(s)	1131
BseDI	CCNNGG	2 cut(s)	57, 634
BseGI	GGATG	2 cut(s)	676, 861
BseLI	CCNNNNNNNGG	3 cut(s)	872, 888, 1175
BseMI	GCAATG	7 cut(s)	139, 157, 196, 310, 328, 352, 413
BseNI	ACTGG	5 cut(s)	127, 166, 205, 244, 1037
BseRI	GAGGAG	1 cut(s)	1170
BseXI	GCAGC	1 cut(s)	1276
BshFI	GGCC	3 cut(s)	881, 994, 1129
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	1281
BslFI	GGGAC	2 cut(s)	411, 718
BslI	CCNNNNNNNGG	3 cut(s)	872, 888, 1175
BsmAI	GTCTC	3 cut(s)	670, 964, 1058
BsmFI	GGGAC	2 cut(s)	411, 718
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	881, 994, 1129
Bso31I	GGTCTC	1 cut(s)	964
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	1082
Bsp143I	GATC	2 cut(s)	578, 1093
Bsp19I	CCATGG	2 cut(s)	57, 634
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	3 cut(s)	881, 994, 1129
BspLI	GGNNCC	2 cut(s)	430, 880
BspPI	GGATC	1 cut(s)	586
BspT104I	TTCGAA	1 cut(s)	1082
BspTNI	GGTCTC	1 cut(s)	964
BsrDI	GCAATG	7 cut(s)	139, 157, 196, 310, 328, 352, 413
BsrI	ACTGG	5 cut(s)	127, 166, 205, 244, 1037
BssECI	CCNNGG	2 cut(s)	57, 634
BssMI	GATC	2 cut(s)	578, 1093
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	57, 634
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	1131
Bst4CI	ACNGT	4 cut(s)	566, 770, 958, 1071
Bst6I	CTCTTC	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	1082
BstC8I	GCNNGC	2 cut(s)	67, 1269
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	2 cut(s)	57, 634
BstF5I	GGATG	2 cut(s)	676, 861
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	581, 1096
BstMAI	GTCTC	3 cut(s)	670, 964, 1058
BstMBI	GATC	2 cut(s)	578, 1093
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 123, 162, 201, 240, 428, 944
BstNI	CCWGG	1 cut(s)	1131
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	1129
BstSFI	CTRYAG	1 cut(s)	1123
BstV1I	GCAGC	1 cut(s)	1276
BstV2I	GAAGAC	2 cut(s)	1017, 1124
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	881, 994, 1129
BtgI	CCRYGG	2 cut(s)	57, 634
BtsCI	GGATG	2 cut(s)	676, 861
BtsI	GCAGTG	5 cut(s)	94, 133, 172, 211, 250
BtsIMutI	CAGTG	9 cut(s)	94, 120, 133, 159, 172, 198, 211, 237, 250
Cac8I	GCNNGC	2 cut(s)	67, 1269
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	879
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	1192
CspCI	CAANNNNNGTGG	1 cut(s)	1266
CviAII	CATG	6 cut(s)	58, 412, 635, 738, 760, 832
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	580, 1095
DpnII	GATC	2 cut(s)	578, 1093
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	57, 634
Eco147I	AGGCCT	1 cut(s)	994
Eco31I	GGTCTC	1 cut(s)	964
Eco88I	CYCGRG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	1129
EcoT14I	CCWWGG	2 cut(s)	57, 634
EcoT22I	ATGCAT	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	57, 634
FaeI	CATG	6 cut(s)	61, 415, 638, 741, 763, 835
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	2 cut(s)	411, 718
FatI	CATG	6 cut(s)	57, 411, 634, 737, 759, 831
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	1 cut(s)	1290
FokI	GGATG	2 cut(s)	683, 848
Fsp4HI	GCNGC	1 cut(s)	1290
FspBI	CTAG	2 cut(s)	389, 1112
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	1290
HaeIII	GGCC	3 cut(s)	881, 994, 1129
HapII	CCGG	1 cut(s)	1281
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	61, 415, 638, 741, 763, 835
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	3 cut(s)	517, 859, 973
HindII	GTYRAC	3 cut(s)	517, 859, 973
HinfI	GANTC	6 cut(s)	639, 706, 724, 742, 851, 1146
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	1 cut(s)	1281
HphI	GGTGA	4 cut(s)	623, 847, 911, 1206
Hpy166II	GTNNAC	5 cut(s)	458, 517, 859, 973, 1074
Hpy188I	TCNGA	3 cut(s)	670, 964, 1093
Hpy188III	TCNNGA	2 cut(s)	728, 1150
Hpy8I	GTNNAC	5 cut(s)	458, 517, 859, 973, 1074
Hpy99I	CGWCG	2 cut(s)	377, 397
HpyAV	CCTTC	3 cut(s)	710, 714, 1097
HpyCH4III	ACNGT	4 cut(s)	566, 770, 958, 1071
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	7 cut(s)	350, 411, 417, 546, 947, 1224, 1271
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 123, 162, 201, 240, 428, 944
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	61, 415, 638, 741, 763, 835
HspAI	GCGC	1 cut(s)	422
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	578, 1093
LmnI	GCTCC	3 cut(s)	403, 428, 788
Lsp1109I	GCAGC	1 cut(s)	1276
LweI	GCATC	2 cut(s)	814, 925
MaeI	CTAG	2 cut(s)	389, 1112
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	7 cut(s)	308, 338, 356, 538, 728, 770, 952
MalI	GATC	2 cut(s)	580, 1095
MboI	GATC	2 cut(s)	578, 1093
MboII	GAAGA	3 cut(s)	567, 1022, 1129
MflI	RGATCY	1 cut(s)	578
MluCI	AATT	4 cut(s)	351, 549, 1085, 1272
MlyI	GAGTC	5 cut(s)	648, 700, 718, 860, 1155
MnlI	CCTC	9 cut(s)	551, 606, 641, 789, 882, 895, 904, 1148, 1177
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	1107
MseI	TTAA	2 cut(s)	516, 1294
MslI	CAYNNNNRTG	1 cut(s)	463
MspI	CCGG	1 cut(s)	1281
MspR9I	CCNGG	1 cut(s)	1131
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	7 cut(s)	62, 123, 162, 201, 240, 428, 944
NcoI	CCATGG	2 cut(s)	57, 634
NdeII	GATC	2 cut(s)	578, 1093
NlaIII	CATG	6 cut(s)	61, 415, 638, 741, 763, 835
NlaIV	GGNNCC	2 cut(s)	430, 880
NmuCI	GTSAC	4 cut(s)	356, 538, 728, 770
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	1082
PceI	AGGCCT	1 cut(s)	994
PcsI	WCGNNNNNNNCGW	1 cut(s)	927
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	1107
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	1291
PleI	GAGTC	5 cut(s)	647, 700, 718, 859, 1154
PpsI	GAGTC	5 cut(s)	647, 700, 718, 859, 1154
Psp6I	CCWGG	1 cut(s)	1129
PspGI	CCWGG	1 cut(s)	1129
PspN4I	GGNNCC	2 cut(s)	430, 880
PspPI	GGNCC	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	516, 1294
SatI	GCNGC	1 cut(s)	1290
Sau3AI	GATC	2 cut(s)	578, 1093
Sau96I	GGNCC	1 cut(s)	879
SchI	GAGTC	5 cut(s)	648, 700, 718, 860, 1155
ScrFI	CCNGG	1 cut(s)	1131
SetI	ASST	7 cut(s)	71, 378, 915, 1124, 1219, 1230, 1238
SfaNI	GCATC	2 cut(s)	814, 925
SfcI	CTRYAG	1 cut(s)	1123
SfuI	TTCGAA	1 cut(s)	1082
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	4 cut(s)	351, 549, 1085, 1272
SseBI	AGGCCT	1 cut(s)	994
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	2 cut(s)	389, 1112
StuI	AGGCCT	1 cut(s)	994
StyD4I	CCNGG	1 cut(s)	1129
StyI	CCWWGG	2 cut(s)	57, 634
TaaI	ACNGT	4 cut(s)	566, 770, 958, 1071
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	7 cut(s)	598, 709, 765, 921, 972, 1082, 1144
TasI	AATT	4 cut(s)	351, 549, 1085, 1272
TatI	WGTACW	1 cut(s)	1191
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	2 cut(s)	516, 1294
Tru9I	TTAA	2 cut(s)	516, 1294
TscAI	CASTG	9 cut(s)	94, 127, 133, 166, 172, 205, 211, 244, 250
TseFI	GTSAC	4 cut(s)	356, 538, 728, 770
TseI	GCWGC	1 cut(s)	1289
Tsp45I	GTSAC	4 cut(s)	356, 538, 728, 770
TspDTI	ATGAA	3 cut(s)	687, 688, 1010
TspGWI	ACGGA	5 cut(s)	111, 273, 297, 303, 327
TspRI	CASTG	9 cut(s)	94, 127, 133, 166, 172, 205, 211, 244, 250
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	1107
XspI	CTAG	2 cut(s)	389, 1112
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.