RLG00000035319

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002778
Physical Location & Seq
Forward (+)
64930142 .. 64931869
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035319

Sequence Viewer

Length: 1323 bp
ATGGCTAAAGTTAGAGGGTCATATATTTTGTTGGCTCTCTTTGTAGTGCTCATTTCGATCGAAGCCTCCGTTGTTTTTGGTCAAGCCAACGGCAATGGAAATGCGAATGGAAACGGCAACACTGGCAGTGGCAACGGAAATGCCAACGGCAATGGCAACACCGGCAGTGGCAACGGAAATGGGAACGGCAATGGCAACACTGGCAGTGGCAACGGCAATGGGAATGGGAACGGCAACACTGGCAGTGGCAATGGCAACGGCAACGGGAATGGGAACGGCAATACTGGCAGTGGAAACGGAAACGGGAATGGAAACGGCAACGGGAATGGCAATGGCAATGGAAACGGAAACGGGAATGGGAACGGAAATCAAGTTAATGCTGAAGTTACAAACTACCAGGTATTGTCACCACTAGCAACCGGACAAGAGAGATGCATGTGCAAAGCTCAGGGCACCTGTTTCTACAAGACCCTTGTCTGTCCACCGGAGTGCCCTCAGAGAAAGCCTAAGCAGAACAAGAAACACAAGGGCTGCTTCGTCAACTGCGGCAGCAAGTGTGAAGTCACCTGCAAGTTTAGAAGAGCCAACTGTAATGGGTATGGTTCTCTCTGCTATGATCCTCGATTTGTTGGTGGAGATGGTGTTATGTTCTACTTCCATGGAGCCAAGGGAGGAAACTTTGCCATTGTTTCAGACGATAACCTCCAGATCAATGCACACTTCATTGGGACTCGACCACTAGGAAGGACTCACGACTTCACATGGGTCCAAGCCCTCTCAATCATGTTCGACAATCACAACCTTGTCATTGCAGCAAAGAGGGTATCAAAGTGGGATGACAAAGTTGATGCTCTCATCGTAAGGTGGGATGGCGAGTCGGTTAGCATTCCTTCTGATGGAGAAGCCGAATGGAGGACTAATGGTAATCAAGAACGACAGGTAATCGTGGAAAGAACCGATGACACTAACAACGTAAGAGTTACAGTTGCAGGGCTACTGGAAATGGACATTAAGATTAGGCCTATTGGAGAAGAAGAAAACAAGGTTCATAAATATCAAATACCAGCTGATGATACTTTTGCTCACTTGGAAACACAGTTCAGATTTTCAAACTTATCTGATCTTGTCGAAGGAGTTTTGGGCAAGACTTATAGGCCAGGTTATGTTAGTCCAGTCAAGGTTGGAGTTCCAATGCCAATGATGGGTGGGGCGGACAAGTACAGAACTGCTTCACTATTCTCACCTCTCTGCAAGGTTTGCAGGTTCCAAACTACTAGTCAATCTGCAGGGTTTGAAATTTCAAGTGGAGTGGCATCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

441

Amino Acids

46.43

Weight (kDa)

8.49

Isoelectric Point (pI)

4.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 366 - 422 3.7e-29 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 2 cut(s) 575, 1251
AccB1I GGYRCC 1 cut(s) 452
AciI CCGC 2 cut(s) 546, 1211
AclWI GGATC 1 cut(s) 611
AcsI RAATTY 1 cut(s) 1296
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 1220
AfiI CCNNNNNNNGG 3 cut(s) 896, 912, 1202
AgsI TTSAA 3 cut(s) 1110, 1295, 1302
AhlI ACTAGT 1 cut(s) 1274
AjnI CCWGG 2 cut(s) 396, 1156
AleI CACNNNNGTG 1 cut(s) 487
AloI GAACNNNNNNTCC 2 cut(s) 1082, 1114
AluBI AGCT 2 cut(s) 446, 1067
AluI AGCT 2 cut(s) 446, 1067
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 611
AoxI GGCC 2 cut(s) 1019, 1154
ApeKI GCWGC 3 cut(s) 531, 549, 812
ApoI RAATTY 1 cut(s) 1296
ArsI GACNNNNNNTTYG 2 cut(s) 1261, 1293
Asp700I GAANNNNTTC 1 cut(s) 1228
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 3 cut(s) 399, 556, 1233
AvaII GGWCC 1 cut(s) 766
BaeGI GKGCMC 2 cut(s) 455, 494
BanI GGYRCC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 518, 561, 824
BccI CCATC 4 cut(s) 632, 863, 890, 1195
BceAI ACGGC 9 cut(s) 106, 130, 163, 202, 229, 247, 274, 292, 331
BciT130I CCWGG 2 cut(s) 398, 1158
BcuI ACTAGT 1 cut(s) 1274
BfaI CTAG 3 cut(s) 413, 740, 1275
BfmI CTRYAG 1 cut(s) 1284
BfuAI ACCTGC 2 cut(s) 575, 1251
BisI GCNGC 4 cut(s) 532, 547, 550, 813
BlsI GCNGC 4 cut(s) 533, 548, 551, 814
Bme1390I CCNGG 2 cut(s) 398, 1158
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 4 cut(s) 454, 664, 767, 1265
BmrFI CCNGG 2 cut(s) 398, 1158
BmsI GCATC 2 cut(s) 422, 838
BoxI GACNNNNGTC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 689
Bpu10I CCTNAGC 2 cut(s) 447, 507
BsaJI CCNNGG 2 cut(s) 658, 666
BsaWI WCCGGW 2 cut(s) 419, 484
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 896, 912, 1202
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 6 cut(s) 127, 205, 244, 289, 1002, 1172
Bse3DI GCAATG 8 cut(s) 100, 157, 196, 223, 256, 337, 343, 807
BseBI CCWGG 2 cut(s) 398, 1158
BseDI CCNNGG 2 cut(s) 658, 666
BseGI GGATG 2 cut(s) 841, 874
BseLI CCNNNNNNNGG 3 cut(s) 896, 912, 1202
BseMI GCAATG 8 cut(s) 100, 157, 196, 223, 256, 337, 343, 807
BseMII CTCAG 2 cut(s) 461, 509
BseNI ACTGG 6 cut(s) 127, 205, 244, 289, 1002, 1172
BseSI GKGCMC 2 cut(s) 455, 494
BseXI GCAGC 3 cut(s) 518, 561, 824
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 1021, 1156
BshNI GGYRCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 3 cut(s) 162, 420, 485
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 3 cut(s) 896, 912, 1202
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 2 cut(s) 1021, 1156
Bsp1286I GDGCHC 3 cut(s) 51, 455, 494
Bsp143I GATC 4 cut(s) 57, 616, 708, 1120
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 2 cut(s) 546, 1211
BspANI GGCC 2 cut(s) 1021, 1156
BspCNI CTCAG 2 cut(s) 460, 508
BspLI GGNNCC 4 cut(s) 454, 664, 767, 1265
BspMAI CTGCAG 1 cut(s) 1288
BspMI ACCTGC 2 cut(s) 575, 1251
BspPI GGATC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 8 cut(s) 100, 157, 196, 223, 256, 337, 343, 807
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 6 cut(s) 127, 205, 244, 289, 1002, 1172
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 658, 666
BssMI GATC 4 cut(s) 57, 616, 708, 1120
BssT1I CCWWGG 2 cut(s) 658, 666
Bst2UI CCWGG 2 cut(s) 398, 1158
Bst4CI ACNGT 3 cut(s) 590, 985, 1098
Bst6I CTCTTC 1 cut(s) 574
BstAPI GCANNNNNTGC 1 cut(s) 1257
BstDEI CTNAG 3 cut(s) 447, 495, 507
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 2 cut(s) 841, 874
BstKTI GATC 4 cut(s) 60, 619, 711, 1123
BstMBI GATC 4 cut(s) 57, 616, 708, 1120
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 6 cut(s) 123, 162, 201, 240, 285, 1257
BstNI CCWGG 2 cut(s) 398, 1158
BstNSI RCATGY 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 396, 1156
BstSFI CTRYAG 1 cut(s) 1284
BstSLI GKGCMC 2 cut(s) 455, 494
BstV1I GCAGC 3 cut(s) 518, 561, 824
BsuRI GGCC 2 cut(s) 1021, 1156
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 2 cut(s) 841, 874
BtsI GCAGTG 5 cut(s) 133, 172, 211, 250, 295
BtsIMutI CAGTG 8 cut(s) 120, 133, 172, 198, 211, 237, 250, 295
BveI ACCTGC 2 cut(s) 575, 1251
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 766
CsiI ACCWGGT 1 cut(s) 396
Csp6I GTAC 1 cut(s) 1219
CspCI CAANNNNNGTGG 1 cut(s) 1290
CviAII CATG 4 cut(s) 436, 659, 762, 784
CviQI GTAC 1 cut(s) 1219
DdeI CTNAG 3 cut(s) 447, 495, 507
DpnI GATC 4 cut(s) 59, 618, 710, 1122
DpnII GATC 4 cut(s) 57, 616, 708, 1120
Eam1104I CTCTTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 574
EciI GGCGGA 1 cut(s) 1226
Eco130I CCWWGG 2 cut(s) 658, 666
Eco147I AGGCCT 1 cut(s) 1021
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 396, 1156
EcoT14I CCWWGG 2 cut(s) 658, 666
EcoT22I ATGCAT 1 cut(s) 437
ErhI CCWWGG 2 cut(s) 658, 666
FaeI CATG 4 cut(s) 439, 662, 765, 787
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 742
FatI CATG 4 cut(s) 435, 658, 761, 783
Fnu4HI GCNGC 4 cut(s) 532, 547, 550, 813
FokI GGATG 2 cut(s) 848, 881
Fsp4HI GCNGC 4 cut(s) 532, 547, 550, 813
FspBI CTAG 3 cut(s) 413, 740, 1275
GluI GCNGC 4 cut(s) 532, 547, 550, 813
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 1021, 1156
HapII CCGG 3 cut(s) 162, 420, 485
Hin1II CATG 4 cut(s) 439, 662, 765, 787
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 3 cut(s) 730, 748, 875
HpaII CCGG 3 cut(s) 162, 420, 485
HphI GGTGA 3 cut(s) 399, 556, 1233
Hpy166II GTNNAC 2 cut(s) 482, 541
Hpy188I TCNGA 5 cut(s) 498, 694, 895, 1103, 1120
Hpy188III TCNNGA 3 cut(s) 706, 752, 929
Hpy8I GTNNAC 2 cut(s) 482, 541
HpyAV CCTTC 3 cut(s) 738, 900, 1124
HpyCH4III ACNGT 3 cut(s) 590, 985, 1098
HpyCH4IV ACGT 1 cut(s) 972
HpyCH4V TGCA 9 cut(s) 435, 441, 570, 716, 812, 989, 1251, 1260, 1286
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 162, 201, 240, 285, 1257
HpyF3I CTNAG 3 cut(s) 447, 495, 507
HpySE526I ACGT 1 cut(s) 972
Hsp92II CATG 4 cut(s) 439, 662, 765, 787
Kzo9I GATC 4 cut(s) 57, 616, 708, 1120
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 3 cut(s) 518, 561, 824
LweI GCATC 2 cut(s) 422, 838
MabI ACCWGGT 1 cut(s) 396
MaeI CTAG 3 cut(s) 413, 740, 1275
MaeII ACGT 1 cut(s) 972
MaeIII GTNAC 4 cut(s) 385, 405, 562, 979
MalI GATC 4 cut(s) 59, 618, 710, 1122
MboI GATC 4 cut(s) 57, 616, 708, 1120
MboII GAAGA 3 cut(s) 591, 1043, 1046
MhlI GDGCHC 3 cut(s) 51, 455, 494
MluCI AATT 1 cut(s) 1296
MlyI GAGTC 3 cut(s) 724, 742, 884
MmeI TCCRAC 1 cut(s) 1162
Mph1103I ATGCAT 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 1228
MseI TTAA 2 cut(s) 375, 1011
MslI CAYNNNNRTG 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 3 cut(s) 162, 420, 485
MspR9I CCNGG 2 cut(s) 398, 1158
Mva1269I GAATGC 1 cut(s) 885
MvaI CCWGG 2 cut(s) 398, 1158
MwoI GCNNNNNNNGC 6 cut(s) 123, 162, 201, 240, 285, 1257
NcoI CCATGG 1 cut(s) 658
NdeII GATC 4 cut(s) 57, 616, 708, 1120
NlaIII CATG 4 cut(s) 439, 662, 765, 787
NlaIV GGNNCC 4 cut(s) 454, 664, 767, 1265
NmuCI GTSAC 2 cut(s) 405, 562
NsiI ATGCAT 1 cut(s) 437
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 1021
PciSI GCTCTTC 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 1228
PkrI GCNGC 4 cut(s) 533, 548, 551, 814
Ple19I CGATCG 1 cut(s) 60
PleI GAGTC 3 cut(s) 724, 742, 883
PpsI GAGTC 3 cut(s) 724, 742, 883
PshAI GACNNNNGTC 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 396, 1156
PspGI CCWGG 2 cut(s) 396, 1156
PspN4I GGNNCC 4 cut(s) 454, 664, 767, 1265
PspPI GGNCC 1 cut(s) 766
PstI CTGCAG 1 cut(s) 1288
PvuI CGATCG 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 1220
RsaNI GTAC 1 cut(s) 1219
RseI CAYNNNNRTG 1 cut(s) 487
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 2 cut(s) 375, 1011
SatI GCNGC 4 cut(s) 532, 547, 550, 813
Sau3AI GATC 4 cut(s) 57, 616, 708, 1120
Sau96I GGNCC 1 cut(s) 766
SchI GAGTC 3 cut(s) 724, 742, 884
ScrFI CCNGG 2 cut(s) 398, 1158
SduI GDGCHC 3 cut(s) 51, 455, 494
SexAI ACCWGGT 1 cut(s) 396
SfaNI GCATC 2 cut(s) 422, 838
SfcI CTRYAG 1 cut(s) 1284
SinI GGWCC 1 cut(s) 766
SmiMI CAYNNNNRTG 1 cut(s) 487
SpeI ACTAGT 1 cut(s) 1274
Sse9I AATT 1 cut(s) 1296
SseBI AGGCCT 1 cut(s) 1021
SsiI CCGC 2 cut(s) 546, 1211
SspMI CTAG 3 cut(s) 413, 740, 1275
StuI AGGCCT 1 cut(s) 1021
StyD4I CCNGG 2 cut(s) 396, 1156
StyI CCWWGG 2 cut(s) 658, 666
TaaI ACNGT 3 cut(s) 590, 985, 1098
TaiI ACGT 1 cut(s) 975
TaqI TCGA 6 cut(s) 56, 60, 622, 733, 789, 1128
TasI AATT 1 cut(s) 1296
TatI WGTACW 1 cut(s) 1218
TauI GCSGC 1 cut(s) 549
Tru1I TTAA 2 cut(s) 375, 1011
Tru9I TTAA 2 cut(s) 375, 1011
TscAI CASTG 8 cut(s) 127, 133, 172, 205, 211, 244, 250, 295
TseFI GTSAC 2 cut(s) 405, 562
TseI GCWGC 3 cut(s) 531, 549, 812
Tsp45I GTSAC 2 cut(s) 405, 562
TspDTI ATGAA 2 cut(s) 712, 1037
TspGWI ACGGA 6 cut(s) 58, 150, 189, 312, 360, 378
TspRI CASTG 8 cut(s) 127, 133, 172, 205, 211, 244, 250, 295
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 1 cut(s) 1296
XceI RCATGY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 1228
XspI CTAG 3 cut(s) 413, 740, 1275
Zsp2I ATGCAT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.