RLG00000035318

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002778
Physical Location & Seq
Forward (+)
64912205 .. 64913726
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035318

Sequence Viewer

Length: 1239 bp
ATGGCTAAACTGAGAGTGTCTTTTGTGTTGGTGGCAGTCGCTGTGCTGCTCATTGCCATGGAAGCCAGCTCTGTTCTGGGCCAAGGCAGTGGAAACGGAAATGGGAATGGGAATGGGAACACTGGCAGTGGCAACGGAAATGGGAACGGGAATGGCAACACTGGCAGTGGCAACGGGAATGGGAACGGGAATGGCAACACTGGCAGTGGCAACGGCAACGGAAATGGGAACGGCAACGGGAATGGCAATGGTAACGGAAATGGCAATGGCAACGGGAATGGTAACGGCAACGCAATTAGTGACAGCACGAACTACGACGTATTGCCACCACTAGCGACGGGACAGGAGCAATGCATGTGCAAAGCGCAGGGAGCCTGTTTCTACAAGACGCTTGTTTGTCCACCAGAATGCCCCGAGAGAAAGCCTAAAAACAACAAGAAAAAAAAGGGTTGCTTCGTTAACTGCGGAAGCAAGTGTGAAGTCACTTGCCAAATTAGAAGAGGCAATTGTGATGGTTATGGATCTATCTGTTACGACCCTCGATTTATTGGTGGAGATGGTATAATGTTCTACTTCCATGGAGTCAAGGGAGGAAACTTTGCCATTGTCTCGGATGAAAACCTCCACATCAACGCACATTTCATTGGGACTCGACCAGAAGGAAGGACTCGTGACTTCACATGGATTCAAGCAATCTCAATCATGTTCGACAGTCACACCCTTGTTATTGGAGCAAAGCGGGTTTCCAAGTGGAATGACAAAGTTGATGCTCTCATGGTGAAGTGGGATGGTGAGTCAGTTGACATCCCTGAACATGGAGGGGCCGAATGGAGGACTAATGGTGAGGACAGAGAGGTAATCATCGAAAGAACCGATGATGCGAACTATGCAAGAGTTACGGTCTCTGATTTGGTCGACATAACCATTAGGGTTAGGCCTATTGGAGAAAAGGAAGACAGGGTTCATCATTACCATATACCAGCTGATGATACTTTTGCTCACTTGGAGACACAGTTCACATTTTCGAAATTATCCGATCTGGTGGAAGGAGTTCTAGGGAAGACCTATAGGCCAGGTTATGTTAGTCGAGTCAAGAGAGGAGTTCCAATGCCATTGATGGGTGGAGAGGATAAGTACAAAACTCCATCACTCTTTTCACCTATCTGCAAGGTTTGTAGGTTTCAAACTACTGCTCGTCAATCTGGTGGGCTTGCAATTACAACCGGAGTGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

413

Amino Acids

43.78

Weight (kDa)

8.17

Isoelectric Point (pI)

12.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 338 - 394 7.9e-28 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 915
AciI CCGC 2 cut(s) 465, 739
AclWI GGATC 1 cut(s) 529
AfaI GTAC 1 cut(s) 1136
AfiI CCNNNNNNNGG 3 cut(s) 815, 831, 1118
AgsI TTSAA 2 cut(s) 689, 1184
AjnI CCWGG 1 cut(s) 1072
AloI GAACNNNNNNTCC 2 cut(s) 998, 1030
AluBI AGCT 2 cut(s) 69, 983
AluI AGCT 2 cut(s) 69, 983
Alw26I GTCTC 3 cut(s) 613, 907, 1001
AlwI GGATC 1 cut(s) 529
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 4 cut(s) 79, 822, 935, 1070
ApeKI GCWGC 2 cut(s) 46, 1232
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 79, 822
AsuHPI GGTGA 4 cut(s) 790, 803, 854, 1149
AsuII TTCGAA 1 cut(s) 1025
AvaI CYCGRG 1 cut(s) 413
BauI CACGAG 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 960, 1067
BbvI GCAGC 2 cut(s) 33, 1219
BccI CCATC 5 cut(s) 506, 551, 782, 1111, 1153
BceAI ACGGC 3 cut(s) 229, 247, 301
BciT130I CCWGG 1 cut(s) 1074
BcoDI GTCTC 3 cut(s) 613, 907, 1001
BfaI CTAG 2 cut(s) 332, 1055
BfmI CTRYAG 1 cut(s) 1066
BisI GCNGC 2 cut(s) 47, 1233
BlsI GCNGC 2 cut(s) 48, 1234
Bme1390I CCNGG 1 cut(s) 1074
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 79, 822
BmiI GGNNCC 2 cut(s) 373, 823
BmrFI CCNGG 1 cut(s) 1074
BmsI GCATC 2 cut(s) 757, 868
BpiI GAAGAC 2 cut(s) 960, 1067
Bpu14I TTCGAA 1 cut(s) 1025
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 3 cut(s) 57, 82, 577
BsaWI WCCGGW 1 cut(s) 1223
BsaXI ACNNNNNCTCC 2 cut(s) 998, 1028
Bsc4I CCNNNNNNNGG 3 cut(s) 815, 831, 1118
Bse1I ACTGG 3 cut(s) 127, 166, 205
Bse3DI GCAATG 4 cut(s) 51, 253, 271, 356
BseBI CCWGG 1 cut(s) 1074
BseDI CCNNGG 3 cut(s) 57, 82, 577
BseGI GGATG 3 cut(s) 619, 793, 804
BseLI CCNNNNNNNGG 3 cut(s) 815, 831, 1118
BseMI GCAATG 4 cut(s) 51, 253, 271, 356
BseNI ACTGG 3 cut(s) 127, 166, 205
BseRI GAGGAG 1 cut(s) 1113
BseXI GCAGC 2 cut(s) 33, 1219
BshFI GGCC 4 cut(s) 81, 824, 937, 1072
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 1224
BslFI GGGAC 2 cut(s) 354, 661
BslI CCNNNNNNNGG 3 cut(s) 815, 831, 1118
BsmAI GTCTC 3 cut(s) 613, 907, 1001
BsmFI GGGAC 2 cut(s) 354, 661
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 4 cut(s) 81, 824, 937, 1072
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 1025
Bsp143I GATC 2 cut(s) 521, 1036
Bsp19I CCATGG 2 cut(s) 57, 577
BspACI CCGC 2 cut(s) 465, 739
BspANI GGCC 4 cut(s) 81, 824, 937, 1072
BspLI GGNNCC 2 cut(s) 373, 823
BspPI GGATC 1 cut(s) 529
BspT104I TTCGAA 1 cut(s) 1025
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 4 cut(s) 51, 253, 271, 356
BsrI ACTGG 3 cut(s) 127, 166, 205
BssECI CCNNGG 3 cut(s) 57, 82, 577
BssMI GATC 2 cut(s) 521, 1036
BssSI CACGAG 1 cut(s) 669
BssT1I CCWWGG 3 cut(s) 57, 82, 577
Bst2BI CACGAG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 1074
Bst4CI ACNGT 3 cut(s) 713, 901, 1014
Bst6I CTCTTC 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 67, 1212
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 2 cut(s) 57, 577
BstF5I GGATG 3 cut(s) 619, 793, 804
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 2 cut(s) 524, 1039
BstMAI GTCTC 3 cut(s) 613, 907, 1001
BstMBI GATC 2 cut(s) 521, 1036
BstMWI GCNNNNNNNGC 5 cut(s) 62, 162, 201, 371, 887
BstNI CCWGG 1 cut(s) 1074
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 1072
BstSFI CTRYAG 1 cut(s) 1066
BstV1I GCAGC 2 cut(s) 33, 1219
BstV2I GAAGAC 2 cut(s) 960, 1067
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 1 cut(s) 521
BsuRI GGCC 4 cut(s) 81, 824, 937, 1072
BtgI CCRYGG 2 cut(s) 57, 577
BtsCI GGATG 3 cut(s) 619, 793, 804
BtsI GCAGTG 4 cut(s) 94, 133, 172, 211
BtsIMutI CAGTG 7 cut(s) 94, 120, 133, 159, 172, 198, 211
Cac8I GCNNGC 2 cut(s) 67, 1212
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 79, 822
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 1135
CspCI CAANNNNNGTGG 1 cut(s) 1209
CviAII CATG 7 cut(s) 58, 355, 578, 681, 703, 775, 815
CviQI GTAC 1 cut(s) 1135
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 523, 1038
DpnII GATC 2 cut(s) 521, 1036
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Eco130I CCWWGG 3 cut(s) 57, 82, 577
Eco147I AGGCCT 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 907
Eco88I CYCGRG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 1072
EcoT14I CCWWGG 3 cut(s) 57, 82, 577
EcoT22I ATGCAT 1 cut(s) 356
ErhI CCWWGG 3 cut(s) 57, 82, 577
FaeI CATG 7 cut(s) 61, 358, 581, 684, 706, 778, 818
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 2 cut(s) 354, 661
FatI CATG 7 cut(s) 57, 354, 577, 680, 702, 774, 814
FauI CCCGC 1 cut(s) 732
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 47, 1233
FokI GGATG 3 cut(s) 626, 791, 800
Fsp4HI GCNGC 2 cut(s) 47, 1233
FspBI CTAG 2 cut(s) 332, 1055
GlaI GCGC 1 cut(s) 366
GluI GCNGC 2 cut(s) 47, 1233
HaeIII GGCC 4 cut(s) 81, 824, 937, 1072
HapII CCGG 1 cut(s) 1224
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 367
Hin1II CATG 7 cut(s) 61, 358, 581, 684, 706, 778, 818
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 3 cut(s) 460, 802, 916
HindII GTYRAC 3 cut(s) 460, 802, 916
HinfI GANTC 6 cut(s) 582, 649, 667, 685, 794, 1089
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 1 cut(s) 1224
HphI GGTGA 4 cut(s) 790, 803, 854, 1149
Hpy166II GTNNAC 5 cut(s) 401, 460, 802, 916, 1017
Hpy188I TCNGA 3 cut(s) 613, 907, 1036
Hpy188III TCNNGA 2 cut(s) 671, 1093
Hpy8I GTNNAC 5 cut(s) 401, 460, 802, 916, 1017
Hpy99I CGWCG 2 cut(s) 320, 340
HpyAV CCTTC 3 cut(s) 653, 657, 1040
HpyCH4III ACNGT 3 cut(s) 713, 901, 1014
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 354, 360, 890, 1167, 1214
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 162, 201, 371, 887
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 7 cut(s) 61, 358, 581, 684, 706, 778, 818
HspAI GCGC 1 cut(s) 365
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 521, 1036
LmnI GCTCC 3 cut(s) 346, 371, 731
Lsp1109I GCAGC 2 cut(s) 33, 1219
LweI GCATC 2 cut(s) 757, 868
MaeI CTAG 2 cut(s) 332, 1055
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 8 cut(s) 251, 281, 299, 481, 530, 671, 713, 895
MalI GATC 2 cut(s) 523, 1038
MboI GATC 2 cut(s) 521, 1036
MboII GAAGA 3 cut(s) 510, 965, 1072
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 1 cut(s) 521
MluCI AATT 5 cut(s) 294, 492, 505, 1028, 1215
MlyI GAGTC 5 cut(s) 591, 643, 661, 803, 1098
Mph1103I ATGCAT 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 2 cut(s) 459, 1237
MslI CAYNNNNRTG 2 cut(s) 56, 406
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 1 cut(s) 1224
MspR9I CCNGG 1 cut(s) 1074
MunI CAATTG 1 cut(s) 505
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 1074
MwoI GCNNNNNNNGC 5 cut(s) 62, 162, 201, 371, 887
NcoI CCATGG 2 cut(s) 57, 577
NdeII GATC 2 cut(s) 521, 1036
NlaIII CATG 7 cut(s) 61, 358, 581, 684, 706, 778, 818
NlaIV GGNNCC 2 cut(s) 373, 823
NmuCI GTSAC 4 cut(s) 299, 481, 671, 713
NsiI ATGCAT 1 cut(s) 356
NspI RCATGY 1 cut(s) 358
NspV TTCGAA 1 cut(s) 1025
PceI AGGCCT 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 870
PctI GAATGC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 1 cut(s) 685
PkrI GCNGC 2 cut(s) 48, 1234
PleI GAGTC 5 cut(s) 590, 643, 661, 802, 1097
PpsI GAGTC 5 cut(s) 590, 643, 661, 802, 1097
Psp6I CCWGG 1 cut(s) 1072
PspGI CCWGG 1 cut(s) 1072
PspN4I GGNNCC 2 cut(s) 373, 823
PspPI GGNCC 2 cut(s) 79, 822
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 1 cut(s) 1136
RsaNI GTAC 1 cut(s) 1135
RseI CAYNNNNRTG 2 cut(s) 56, 406
SalI GTCGAC 1 cut(s) 914
SaqAI TTAA 2 cut(s) 459, 1237
SatI GCNGC 2 cut(s) 47, 1233
Sau3AI GATC 2 cut(s) 521, 1036
Sau96I GGNCC 2 cut(s) 79, 822
SchI GAGTC 5 cut(s) 591, 643, 661, 803, 1098
ScrFI CCNGG 1 cut(s) 1074
SfaNI GCATC 2 cut(s) 757, 868
SfcI CTRYAG 1 cut(s) 1066
SfuI TTCGAA 1 cut(s) 1025
SmiMI CAYNNNNRTG 2 cut(s) 56, 406
Sse9I AATT 5 cut(s) 294, 492, 505, 1028, 1215
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 2 cut(s) 465, 739
SspMI CTAG 2 cut(s) 332, 1055
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 1 cut(s) 1072
StyI CCWWGG 3 cut(s) 57, 82, 577
TaaI ACNGT 3 cut(s) 713, 901, 1014
TaiI ACGT 1 cut(s) 321
TaqI TCGA 7 cut(s) 541, 652, 708, 864, 915, 1025, 1087
TasI AATT 5 cut(s) 294, 492, 505, 1028, 1215
TatI WGTACW 1 cut(s) 1134
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 2 cut(s) 459, 1237
Tru9I TTAA 2 cut(s) 459, 1237
TscAI CASTG 7 cut(s) 94, 127, 133, 166, 172, 205, 211
TseFI GTSAC 4 cut(s) 299, 481, 671, 713
TseI GCWGC 2 cut(s) 46, 1232
Tsp45I GTSAC 4 cut(s) 299, 481, 671, 713
TspDTI ATGAA 3 cut(s) 630, 631, 953
TspGWI ACGGA 4 cut(s) 111, 150, 234, 270
TspRI CASTG 7 cut(s) 94, 127, 133, 166, 172, 205, 211
XceI RCATGY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 915
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 2 cut(s) 332, 1055
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.