Prupe.6G144700_v2.0.a1

starch synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009675
Physical Location & Seq
Forward (+)
11814799 .. 11826294
11496 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G144700.2

Sequence Viewer

Length: 1821 bp
ATGAGAGTGAAAATGGAGTGTGCAACTGCAGGAAGGTTCTTTGGTCCTTCAAGTTCAAGATTGTCAAATCCAAGGAGGAGGAGGAGGATAGTGTTGAATAGAAATAATGGACTGAGTGCCCACAACTTGTGCTCTTCTTCTAAATTCAAAATTCAAGCTCAAACCCATCTCTCATCAGAGGTAGGCATTGCAAAGCAAGGAAGTTTGACTGATTTTGGCATTCAGGAATTCGTTTGGCCTTCTCCTACTGATGAAATCCCATTTTGGAAGAAGGGCTTCCCTTCTTGGGATGCGAACTTGGAAGTTCCCTCTGAAGTAAAGAAAGATTCCAAACTCATGCACATAATTCATGTCACAGCTGAAATGGCACCAATAGCTAAAGTTGGTGGTCTTGGTGATGTTGTAACTGGACTTGCTCGAGCATGTTTATCGCGGGGCCATAGAGTAGATATAATGCTTCCTTTCTATGGGTGTATCCAGAGGGAGCAGATTGATGACTTGACGTTGATCACAACATATAACTCTTATCATGATGGAAAGTGGATTCCCACTCATGCGTATAGTGGCACAGTTTCAGGAATCCCAGTTATATTTATTGAGCCATCACATCAGTTCTTTAAGGGCCAACATGTGTATGGGGGTTCATACAATGAGCTAGAGGCATATCTGTTCTTTAGTCGTGCTTGCCTTGAATGGATGCAGGTGACTGGAACACAACCTGATATCATTCATGTCCATGAATGGCAGACAGGTGCTTTACCCTTGCTTTATTGGGATATGTATCATTATCTTTCGCTTCAGAAACCGAGAATAGTATTGACAATCCATAACATGGAGCATTATGGTGAATGTAGACAAGAGCAACTTAACATGTGCGGTCTTGACGGATCTCTATATGCAACCTTTGACAAAGCAGTTGATGATCGAACTGTTGGCCATAATCCTGAGAGGTTAAGCTTATTGAAAGGTGGAATTGTCTACAGCAATGCAGTGGTTACAGTTTCTCCAACATATCTCAAGGAAACACTCTGCTCTGGATGGCTTTCAAATACTTTGATAAGACACCGTGATAAGTACGTAGGTATAGTAAATGGAATAGACACTGCGATGTGGAACCCTTCTACTGATGTTTTCTTGCCTTCAAAGTTCCATGCTCAAAACTTTGAGGGCAAAAAGTTATGCAAATACTATGTCCAAAGAGGACTTGGTTTGGCCTCGGGAAACCATGTGCCAGATACTGCACTCAAGGTGCCCTTGGTTGTGTGCATCACTCGCTTAGTAGCACAAAAGGGTCTTCATTTGATTATTCATGCAATTAAGCAAGTTGAAGAACTTGGTGGACAGATGGTTATACTGGGAAAAGCTCCTGATTCTCGGGTTGAAAGTGAATTTGAAGGTCTTGTGAATTTGCATAACCAAGGTCAAAGCATTCGGATATTGTTGATGTATAGTGAGGAGCTATCCCACTTGCTGTATGCTGCTGCAGACTTTATACTAGTTCCTTCCATGTATGAGCCATGTGGACTTGCCCAAATGATTGGAATGCGTTATGGGGCAGTCCCAGTAGTAAGAAAGACTGGCGGTCTTGCAGACACGGTCTTTGACATGGATGATGAGCCAAACCATGAGATGGCCAATGGGTTTGTTTTTGAAGGAATTGATGAAGGATCCCTAAATAGGGCTCTAGGTCGTGCATTCGCTTGCTACAGAAACAAGCCAGATGAATGGAATGGCATTGTTAAGAAGGTTATGGCAGTTGACAATAGCTGGAACAACACAGCTGGAAGGTATATTGAGATTTATGAATCAGTGAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026
Pfam Domains
Protein Families
Glyco_transf_5 Glycos_transf_1

Protein Analysis

607

Amino Acids

67.91

Weight (kDa)

6.91

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 691
AccB1I GGYRCC 2 cut(s) 367, 1249
AccB7I CCANNNNNTGG 2 cut(s) 832, 1630
AccI GTMKAC 2 cut(s) 853, 978
AccII CGCG 1 cut(s) 433
AciI CCGC 3 cut(s) 433, 876, 1581
AclWI GGATC 3 cut(s) 895, 1662, 1675
AcoI YGGCCR 2 cut(s) 934, 1632
AcsI RAATTY 5 cut(s) 143, 150, 227, 1388, 1405
AcuI CTGAAG 2 cut(s) 333, 782
AfaI GTAC 1 cut(s) 1076
AfiI CCNNNNNNNGG 6 cut(s) 286, 467, 832, 1630, 1677, 1678
AflIII ACRYGT 2 cut(s) 628, 870
AhdI GACNNNNNGTC 1 cut(s) 1581
AhlI ACTAGT 1 cut(s) 1495
AluBI AGCT 9 cut(s) 158, 359, 377, 655, 957, 1364, 1459, 1767, 1781
AluI AGCT 9 cut(s) 158, 359, 377, 655, 957, 1364, 1459, 1767, 1781
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 3 cut(s) 895, 1662, 1675
AlwNI CAGNNNCTG 1 cut(s) 1238
Ama87I CYCGRG 3 cut(s) 417, 1216, 1374
AoxI GGCC 6 cut(s) 236, 436, 622, 934, 1212, 1632
ApeKI GCWGC 2 cut(s) 1478, 1481
ApoI RAATTY 5 cut(s) 143, 150, 227, 1388, 1405
ArsI GACNNNNNNTTYG 4 cut(s) 1176, 1208, 1583, 1615
Asp700I GAANNNNTTC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 44, 436, 622
AsuHPI GGTGA 3 cut(s) 407, 715, 857
AvaI CYCGRG 3 cut(s) 417, 1216, 1374
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 121, 1254
BalI TGGCCA 2 cut(s) 936, 1634
BamHI GGATCC 1 cut(s) 1667
BanI GGYRCC 2 cut(s) 367, 1249
BanII GRGCYC 1 cut(s) 1684
BbsI GAAGAC 1 cut(s) 1286
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 1465, 1468
BccI CCATC 6 cut(s) 174, 527, 610, 1032, 1339, 1624
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciVI GTATCC 1 cut(s) 485
BclI TGATCA 1 cut(s) 507
BcuI ACTAGT 1 cut(s) 1495
BfaI CTAG 3 cut(s) 656, 1496, 1685
BfmI CTRYAG 4 cut(s) 27, 979, 1482, 1705
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 1 cut(s) 485
BisI GCNGC 2 cut(s) 1479, 1482
BlsI GCNGC 2 cut(s) 1480, 1483
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 1581
BmeT110I CYCGRG 3 cut(s) 417, 1216, 1374
BmgT120I GGNCC 3 cut(s) 44, 436, 622
BmiI GGNNCC 5 cut(s) 369, 437, 1115, 1251, 1669
BmrI ACTGGG 3 cut(s) 578, 1364, 1556
BmsI GCATC 3 cut(s) 280, 687, 1275
BmuI ACTGGG 3 cut(s) 578, 1364, 1556
BpiI GAAGAC 1 cut(s) 1286
BpuEI CTTGAG 2 cut(s) 1001, 1229
BsaAI YACGTR 1 cut(s) 1078
BsaBI GATNNNNATC 1 cut(s) 780
BsaJI CCNNGG 4 cut(s) 71, 1215, 1254, 1417
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 6 cut(s) 286, 467, 832, 1630, 1677, 1678
Bse1I ACTGG 6 cut(s) 412, 584, 712, 1359, 1562, 1582
Bse3DI GCAATG 2 cut(s) 186, 991
Bse8I GATNNNNATC 1 cut(s) 780
BseDI CCNNGG 4 cut(s) 71, 1215, 1254, 1417
BseGI GGATG 4 cut(s) 295, 702, 1043, 1615
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 6 cut(s) 286, 467, 832, 1630, 1677, 1678
BseMI GCAATG 2 cut(s) 186, 991
BseMII CTCAG 2 cut(s) 104, 936
BseNI ACTGG 6 cut(s) 412, 584, 712, 1359, 1562, 1582
BseRI GAGGAG 4 cut(s) 91, 94, 97, 1469
BseSI GKGCMC 2 cut(s) 121, 1254
BseXI GCAGC 2 cut(s) 1465, 1468
BsgI GTGCAG 1 cut(s) 1224
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 6 cut(s) 238, 438, 624, 936, 1214, 1634
BshNI GGYRCC 2 cut(s) 367, 1249
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 3 cut(s) 417, 1216, 1374
BslFI GGGAC 1 cut(s) 1544
BslI CCNNNNNNNGG 6 cut(s) 286, 467, 832, 1630, 1677, 1678
BsmFI GGGAC 1 cut(s) 1544
BsmI GAATGC 4 cut(s) 219, 1428, 1548, 1694
BsnI GGCC 6 cut(s) 238, 438, 624, 936, 1214, 1634
BsoBI CYCGRG 3 cut(s) 417, 1216, 1374
Bsp1286I GDGCHC 4 cut(s) 121, 134, 1254, 1684
Bsp143I GATC 4 cut(s) 507, 887, 922, 1667
BspACI CCGC 3 cut(s) 433, 876, 1581
BspANI GGCC 6 cut(s) 238, 438, 624, 936, 1214, 1634
BspCNI CTCAG 2 cut(s) 105, 937
BspFNI CGCG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 5 cut(s) 369, 437, 1115, 1251, 1669
BspMAI CTGCAG 2 cut(s) 31, 1486
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 3 cut(s) 895, 1662, 1675
BspQI GCTCTTC 1 cut(s) 139
BspT107I GGYRCC 2 cut(s) 367, 1249
BsrDI GCAATG 2 cut(s) 186, 991
BsrI ACTGG 6 cut(s) 412, 584, 712, 1359, 1562, 1582
BssECI CCNNGG 4 cut(s) 71, 1215, 1254, 1417
BssMI GATC 4 cut(s) 507, 887, 922, 1667
BssT1I CCWWGG 3 cut(s) 71, 1254, 1417
Bst4CI ACNGT 5 cut(s) 571, 931, 1000, 1067, 1597
Bst6I CTCTTC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 2 cut(s) 685, 1702
BstDEI CTNAG 3 cut(s) 113, 945, 1276
BstF5I GGATG 4 cut(s) 295, 702, 1043, 1615
BstFNI CGCG 1 cut(s) 433
BstKTI GATC 4 cut(s) 510, 890, 925, 1670
BstMBI GATC 4 cut(s) 507, 887, 922, 1667
BstMWI GCNNNNNNNGC 3 cut(s) 365, 374, 1272
BstNSI RCATGY 3 cut(s) 426, 632, 874
BstSFI CTRYAG 4 cut(s) 27, 979, 1482, 1705
BstSLI GKGCMC 2 cut(s) 121, 1254
BstSNI TACGTA 1 cut(s) 1078
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 1465, 1468
BstV2I GAAGAC 1 cut(s) 1286
BstX2I RGATCY 2 cut(s) 887, 1667
BstXI CCANNNNNNTGG 2 cut(s) 1538, 1725
BstYI RGATCY 2 cut(s) 887, 1667
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 6 cut(s) 238, 438, 624, 936, 1214, 1634
BtgZI GCGATG 1 cut(s) 1121
BtsCI GGATG 4 cut(s) 295, 702, 1043, 1615
BtsI GCAGTG 2 cut(s) 996, 1101
BtsIMutI CAGTG 3 cut(s) 996, 1101, 1815
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 2 cut(s) 685, 1702
CaiI CAGNNNCTG 1 cut(s) 1238
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 3 cut(s) 44, 436, 622
Csp6I GTAC 1 cut(s) 1075
CviQI GTAC 1 cut(s) 1075
DdeI CTNAG 3 cut(s) 113, 945, 1276
DpnI GATC 4 cut(s) 509, 889, 924, 1669
DpnII GATC 4 cut(s) 507, 887, 922, 1667
DriI GACNNNNNGTC 1 cut(s) 1581
EaeI YGGCCR 2 cut(s) 934, 1632
Eam1104I CTCTTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 1581
EarI CTCTTC 1 cut(s) 139
Eco105I TACGTA 1 cut(s) 1078
Eco130I CCWWGG 3 cut(s) 71, 1254, 1417
Eco24I GRGCYC 1 cut(s) 1684
Eco32I GATATC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 333, 782
Eco88I CYCGRG 3 cut(s) 417, 1216, 1374
EcoRI GAATTC 1 cut(s) 227
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 3 cut(s) 71, 1254, 1417
EcoT38I GRGCYC 1 cut(s) 1684
ErhI CCWWGG 3 cut(s) 71, 1254, 1417
FalI AAGNNNNNCTT 6 cut(s) 260, 292, 849, 881, 1238, 1270
FaqI GGGAC 1 cut(s) 1544
FauI CCCGC 1 cut(s) 426
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 2 cut(s) 853, 978
Fnu4HI GCNGC 2 cut(s) 1479, 1482
FokI GGATG 4 cut(s) 302, 709, 1050, 1622
FriOI GRGCYC 1 cut(s) 1684
Fsp4HI GCNGC 2 cut(s) 1479, 1482
FspBI CTAG 3 cut(s) 656, 1496, 1685
GluI GCNGC 2 cut(s) 1479, 1482
HaeIII GGCC 6 cut(s) 238, 438, 624, 936, 1214, 1634
HincII GTYRAC 1 cut(s) 1759
HindII GTYRAC 1 cut(s) 1759
HindIII AAGCTT 1 cut(s) 955
HinfI GANTC 5 cut(s) 326, 544, 579, 1370, 1805
HphI GGTGA 3 cut(s) 407, 715, 857
Hpy166II GTNNAC 5 cut(s) 854, 979, 1340, 1523, 1759
Hpy188I TCNGA 4 cut(s) 178, 313, 801, 1434
Hpy8I GTNNAC 5 cut(s) 854, 979, 1340, 1523, 1759
HpyCH4III ACNGT 5 cut(s) 571, 931, 1000, 1067, 1597
HpyCH4IV ACGT 2 cut(s) 503, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 374, 1272
HpyF3I CTNAG 3 cut(s) 113, 945, 1276
HpySE526I ACGT 2 cut(s) 503, 1077
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 507, 887, 922, 1667
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 4 cut(s) 484, 835, 1369, 1456
Lsp1109I GCAGC 2 cut(s) 1465, 1468
LweI GCATC 3 cut(s) 280, 687, 1275
MaeI CTAG 3 cut(s) 656, 1496, 1685
MaeII ACGT 2 cut(s) 503, 1077
MaeIII GTNAC 4 cut(s) 352, 403, 703, 994
MalI GATC 4 cut(s) 509, 889, 924, 1669
MboI GATC 4 cut(s) 507, 887, 922, 1667
MboII GAAGA 5 cut(s) 126, 129, 280, 1286, 1340
MflI RGATCY 2 cut(s) 887, 1667
MhlI GDGCHC 4 cut(s) 121, 134, 1254, 1684
MlsI TGGCCA 2 cut(s) 936, 1634
MluCI AATT 9 cut(s) 143, 150, 227, 345, 972, 1314, 1388, 1405, 1656
MluNI TGGCCA 2 cut(s) 936, 1634
MmeI TCCRAC 1 cut(s) 1031
Mox20I TGGCCA 2 cut(s) 936, 1634
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 2 cut(s) 936, 1634
MseI TTAA 5 cut(s) 618, 867, 953, 1317, 1740
MslI CAYNNNNRTG 4 cut(s) 633, 735, 843, 1106
Msp20I TGGCCA 2 cut(s) 936, 1634
MspA1I CMGCKG 2 cut(s) 359, 1781
Mva1269I GAATGC 4 cut(s) 219, 1428, 1548, 1694
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 365, 374, 1272
NdeII GATC 4 cut(s) 507, 887, 922, 1667
NlaIV GGNNCC 5 cut(s) 369, 437, 1115, 1251, 1669
NmuCI GTSAC 2 cut(s) 352, 703
NspI RCATGY 3 cut(s) 426, 632, 874
PaeR7I CTCGAG 1 cut(s) 417
PagI TCATGA 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 2 cut(s) 628, 870
PciSI GCTCTTC 1 cut(s) 139
PctI GAATGC 4 cut(s) 219, 1428, 1548, 1694
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 5 cut(s) 326, 544, 579, 1370, 1805
PflFI GACNNNGTC 1 cut(s) 1595
PflMI CCANNNNNTGG 2 cut(s) 832, 1630
PkrI GCNGC 2 cut(s) 1480, 1483
Ppu21I YACGTR 1 cut(s) 1078
PscI ACATGT 2 cut(s) 628, 870
PspN4I GGNNCC 5 cut(s) 369, 437, 1115, 1251, 1669
PspPI GGNCC 3 cut(s) 44, 436, 622
PspXI VCTCGAGB 1 cut(s) 417
PstI CTGCAG 2 cut(s) 31, 1486
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 2 cut(s) 887, 1667
PsyI GACNNNGTC 1 cut(s) 1595
PvuII CAGCTG 2 cut(s) 359, 1781
RsaI GTAC 1 cut(s) 1076
RsaNI GTAC 1 cut(s) 1075
RseI CAYNNNNRTG 4 cut(s) 633, 735, 843, 1106
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 5 cut(s) 618, 867, 953, 1317, 1740
SatI GCNGC 2 cut(s) 1479, 1482
Sau3AI GATC 4 cut(s) 507, 887, 922, 1667
Sau96I GGNCC 3 cut(s) 44, 436, 622
SduI GDGCHC 4 cut(s) 121, 134, 1254, 1684
SfaNI GCATC 3 cut(s) 280, 687, 1275
SfcI CTRYAG 4 cut(s) 27, 979, 1482, 1705
Sfr274I CTCGAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 4 cut(s) 633, 735, 843, 1106
SmlI CTYRAG 3 cut(s) 417, 1016, 1244
SmoI CTYRAG 3 cut(s) 417, 1016, 1244
SnaBI TACGTA 1 cut(s) 1078
SpeI ACTAGT 1 cut(s) 1495
Sse9I AATT 9 cut(s) 143, 150, 227, 345, 972, 1314, 1388, 1405, 1656
SsiI CCGC 3 cut(s) 433, 876, 1581
SspMI CTAG 3 cut(s) 656, 1496, 1685
StyI CCWWGG 3 cut(s) 71, 1254, 1417
TaaI ACNGT 5 cut(s) 571, 931, 1000, 1067, 1597
TaiI ACGT 2 cut(s) 506, 1080
TaqI TCGA 2 cut(s) 418, 925
TasI AATT 9 cut(s) 143, 150, 227, 345, 972, 1314, 1388, 1405, 1656
TfiI GAWTC 5 cut(s) 326, 544, 579, 1370, 1805
Tru1I TTAA 5 cut(s) 618, 867, 953, 1317, 1740
Tru9I TTAA 5 cut(s) 618, 867, 953, 1317, 1740
TscAI CASTG 3 cut(s) 996, 1108, 1815
TseFI GTSAC 2 cut(s) 352, 703
TseI GCWGC 2 cut(s) 1478, 1481
Tsp45I GTSAC 2 cut(s) 352, 703
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 3 cut(s) 996, 1108, 1815
Tth111I GACNNNGTC 1 cut(s) 1595
Van91I CCANNNNNTGG 2 cut(s) 832, 1630
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 5 cut(s) 143, 150, 227, 1388, 1405
XceI RCATGY 3 cut(s) 426, 632, 874
XcmI CCANNNNNNNNNTGG 2 cut(s) 632, 1202
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 2 cut(s) 853, 978
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 656, 1496, 1685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.