Rorug03G0297900

starch synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009675
Physical Location & Seq
Reverse (-)
30803344 .. 30806885
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0297900.1

Sequence Viewer

Length: 369 bp
ATGGGATTGAAGGAGCTTGCTTTCCTGAAGCACTTATCAGGTGGTGGAAATTGCCTTTGTATTATGTTCTGGAACTCAAGCAGGGATGACTATTCTTGTTATGGACCATCCTCTGGAAAGGTTATTGAGGAGGGTCCAATAACTGTAGCTCCACCAGAGACAATTAGAAAGTTGGAGCAGGCAGCTCGAAGGCTGGCTAAAAGTGTTAACTATGTTGGAGCAGCTAGTGTTGAGTATCTGTACAGTATGGACACTGGCGAGTACTATTTCTTAGAGTTGAACCCTCGGTTGCAGGTGGAGCACCCGGTCACTGAGTGGATAGCAGAAATAAATATGCCAGCAGCCCAAGTTGCAGTAAGAATTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026
Pfam Domains
Protein Families
Glyco_transf_5 Glycos_transf_1

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

5.35

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_L_D2 PF02786 37 - 120 9.6e-18 Carbamoyl-phosphate synthase L chain, ATP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 2 cut(s) 242, 263
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 10, 280
AluBI AGCT 4 cut(s) 16, 149, 185, 224
AluI AGCT 4 cut(s) 16, 149, 185, 224
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 182, 221, 341
AspS9I GGNCC 2 cut(s) 104, 134
AsuC2I CCSGG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 104, 134
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 194, 233, 353
BccI CCATC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 183, 222, 342
BlsI GCNGC 3 cut(s) 184, 223, 343
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 2 cut(s) 104, 134
BmgT120I GGNCC 2 cut(s) 104, 134
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 91, 107
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 194, 233, 353
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 145, 245
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 4 cut(s) 18, 180, 195, 339
BstDEI CTNAG 2 cut(s) 271, 312
BstF5I GGATG 2 cut(s) 91, 107
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 298, 350
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 194, 233, 353
BtsCI GGATG 2 cut(s) 91, 107
BtsIMutI CAGTG 2 cut(s) 252, 309
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 18, 180, 195, 339
Cfr13I GGNCC 2 cut(s) 104, 134
Csp6I GTAC 2 cut(s) 241, 262
CviJI RGCY 7 cut(s) 16, 149, 185, 193, 197, 224, 344
CviKI_1 RGCY 7 cut(s) 16, 149, 185, 193, 197, 224, 344
CviQI GTAC 2 cut(s) 241, 262
DdeI CTNAG 2 cut(s) 271, 312
DraIII CACNNNGTG 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 104, 134
Eco57I CTGAAG 1 cut(s) 47
FaiI YATR 5 cut(s) 65, 102, 213, 248, 335
Fnu4HI GCNGC 3 cut(s) 183, 222, 342
FokI GGATG 2 cut(s) 94, 98
Fsp4HI GCNGC 3 cut(s) 183, 222, 342
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 183, 222, 342
HapII CCGG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 25, 70, 114
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 4, 183
HpyCH4III ACNGT 2 cut(s) 145, 245
HpyCH4V TGCA 2 cut(s) 292, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 350
HpyF3I CTNAG 2 cut(s) 271, 312
KspAI GTTAAC 1 cut(s) 208
LmnI GCTCC 5 cut(s) 13, 154, 175, 218, 298
Lsp1109I GCAGC 3 cut(s) 194, 233, 353
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 49, 162, 360
MmeI TCCRAC 2 cut(s) 153, 196
MnlI CCTC 4 cut(s) 121, 121, 124, 294
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 298, 350
NciI CCSGG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 3 cut(s) 184, 223, 343
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 104, 134
RsaI GTAC 2 cut(s) 242, 263
RsaNI GTAC 2 cut(s) 241, 262
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 183, 222, 342
Sau96I GGNCC 2 cut(s) 104, 134
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 18, 43, 123, 151, 187, 226, 297
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 2 cut(s) 104, 134
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 49, 162, 360
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 145, 245
TaqI TCGA 1 cut(s) 187
TasI AATT 3 cut(s) 49, 162, 360
TatI WGTACW 2 cut(s) 240, 261
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 259, 316
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 182, 221, 341
Tsp45I GTSAC 1 cut(s) 307
TspRI CASTG 2 cut(s) 259, 316
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 104, 134
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.