Rorug03G0298000

starch synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009675
Physical Location & Seq
Forward (+)
30817593 .. 30821070
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0298000.1

Sequence Viewer

Length: 747 bp
ATGGGTGTGCTGTCAAACAAGATCGACAGGGATCAACTCAAACCTGGTGATCATATCTATACATGGAGAAACGCTTACCTCTATGCCCATCACGGGATATATGTCGGTGAGGGAAAGGTTATCCACTTCACTCGGGCAGGGCGGGAAATTGGCACAGGAACTGTGTTAGACCGTTTCATTTTCAGTTCATCTCCATCCCATTCTTCAGAGAATCCCTGCACGAGTTGCGATGATCCATCAGGGCGTGATGGCGGTGTCATGTCTTCTTGCCTAGATTGCTTTCTGTCTGGTGGTGATCTGTACCTCTTTGAATATGGTGTCAGTCCAGCCTTCTTTATTGCCAAAGCCAGAGGAGGTACCTGTACCCTTGCCTTGTCTGATCCATCTGAAGATGTCCTTCACCGTGCATTTTACCTTCTCCAGAATGGTTTTGGCAGCTACAGCCTTTCCAAAAACAATTGTGAAGACTTTGCAATTTATTGCAAAACAGGTTTGCTTGTGAATAGTAGCAATGGTTTGGGAAGGAGTGGGCAGGCATCCTCCGGTTTCTCTTTTGCAGGTGTTGCAAGTGGTATTGGTGTTGCAGGTTCGTCAGCTCGATATTTGCCTATTATGGGTTTCGGTGCTTTCAGTGGTCTGGGTGCTGCTTTCGGTGTTGTTAGTTATTCTCTCCAGCGATTGGTTTATGATATTGGATTCCGCAGTGATGTTTCAAAAGTGCCAGTGGAGGAACTTGGGACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026
Pfam Domains
Protein Families
Glyco_transf_5 Glycos_transf_1

Protein Analysis

248

Amino Acids

26.35

Weight (kDa)

6.05

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 166 5.2e-28 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 548
Acc36I ACCTGC 2 cut(s) 548, 575
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 679
AciI CCGC 3 cut(s) 142, 252, 700
AclWI GGATC 3 cut(s) 39, 227, 374
AcuI CTGAAG 2 cut(s) 189, 408
AfaI GTAC 3 cut(s) 302, 358, 364
AfiI CCNNNNNNNGG 3 cut(s) 93, 614, 679
AgsI TTSAA 2 cut(s) 311, 714
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 438, 596
AluI AGCT 2 cut(s) 438, 596
AlwI GGATC 3 cut(s) 39, 227, 374
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 435, 644
Asp718I GGTACC 1 cut(s) 356
AsuHPI GGTGA 4 cut(s) 59, 119, 305, 392
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 356
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 255, 471
BbvI GCAGC 2 cut(s) 447, 631
BccI CCATC 5 cut(s) 96, 202, 242, 244, 391
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 439
BfuAI ACCTGC 2 cut(s) 548, 575
BisI GCNGC 2 cut(s) 436, 645
BlsI GCNGC 2 cut(s) 437, 646
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 545
BpiI GAAGAC 2 cut(s) 255, 471
BpmI CTGGAG 2 cut(s) 404, 656
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 614, 679
Bse1I ACTGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 194, 536
BseLI CCNNNNNNNGG 3 cut(s) 93, 614, 679
BseMI GCAATG 1 cut(s) 517
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 447, 631
BsgI GTGCAG 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 93, 614, 679
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 6 cut(s) 21, 31, 49, 232, 295, 379
BspACI CCGC 3 cut(s) 142, 252, 700
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 2 cut(s) 548, 575
BspPI GGATC 3 cut(s) 39, 227, 374
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 517
BsrI ACTGG 1 cut(s) 722
BssMI GATC 6 cut(s) 21, 31, 49, 232, 295, 379
BssSI CACGAG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 163, 173, 404
BstAPI GCANNNNNTGC 2 cut(s) 225, 563
BstC8I GCNNGC 1 cut(s) 534
BstF5I GGATG 2 cut(s) 194, 536
BstKTI GATC 6 cut(s) 24, 34, 52, 235, 298, 382
BstMBI GATC 6 cut(s) 21, 31, 49, 232, 295, 379
BstMWI GCNNNNNNNGC 4 cut(s) 225, 276, 441, 563
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 439
BstV1I GCAGC 2 cut(s) 447, 631
BstV2I GAAGAC 2 cut(s) 255, 471
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 194, 536
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 3 cut(s) 637, 709, 729
BveI ACCTGC 2 cut(s) 548, 575
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 301, 357, 363
CviAII CATG 2 cut(s) 63, 259
CviJI RGCY 5 cut(s) 329, 347, 438, 444, 596
CviKI_1 RGCY 5 cut(s) 329, 347, 438, 444, 596
CviQI GTAC 3 cut(s) 301, 357, 363
DpnI GATC 6 cut(s) 23, 33, 51, 234, 297, 381
DpnII GATC 6 cut(s) 21, 31, 49, 232, 295, 379
Eco57I CTGAAG 2 cut(s) 189, 408
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 262
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 2 cut(s) 62, 258
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 436, 645
FokI GGATG 2 cut(s) 181, 523
Fsp4HI GCNGC 2 cut(s) 436, 645
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 436, 645
GsuI CTGGAG 2 cut(s) 404, 656
HapII CCGG 1 cut(s) 543
Hin1II CATG 2 cut(s) 66, 262
HinfI GANTC 2 cut(s) 211, 696
HpaII CCGG 1 cut(s) 543
HphI GGTGA 4 cut(s) 59, 119, 305, 392
Hpy188I TCNGA 3 cut(s) 208, 379, 388
Hpy188III TCNNGA 1 cut(s) 421
HpyAV CCTTC 4 cut(s) 340, 407, 425, 516
HpyCH4III ACNGT 3 cut(s) 163, 173, 404
HpyCH4V TGCA 7 cut(s) 219, 407, 473, 483, 557, 566, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 276, 441, 563
Hsp92II CATG 2 cut(s) 66, 262
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 21, 31, 49, 232, 295, 379
Lsp1109I GCAGC 2 cut(s) 447, 631
LweI GCATC 1 cut(s) 545
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 272
MalI GATC 6 cut(s) 23, 33, 51, 234, 297, 381
MboI GATC 6 cut(s) 21, 31, 49, 232, 295, 379
MboII GAAGA 4 cut(s) 195, 255, 401, 476
MfeI CAATTG 1 cut(s) 457
MluCI AATT 3 cut(s) 147, 457, 474
MnlI CCTC 7 cut(s) 89, 103, 314, 344, 347, 550, 721
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 457
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 225, 276, 441, 563
NdeII GATC 6 cut(s) 21, 31, 49, 232, 295, 379
NlaIII CATG 2 cut(s) 66, 262
NlaIV GGNNCC 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 211, 696
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 2 cut(s) 437, 646
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 161
RsaI GTAC 3 cut(s) 302, 358, 364
RsaNI GTAC 3 cut(s) 301, 357, 363
SatI GCNGC 2 cut(s) 436, 645
Sau3AI GATC 6 cut(s) 21, 31, 49, 232, 295, 379
ScrFI CCNGG 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 439
Sse9I AATT 3 cut(s) 147, 457, 474
SsiI CCGC 3 cut(s) 142, 252, 700
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 163, 173, 404
TaqI TCGA 2 cut(s) 24, 598
TasI AATT 3 cut(s) 147, 457, 474
TfiI GAWTC 2 cut(s) 211, 696
TscAI CASTG 3 cut(s) 637, 709, 729
TseI GCWGC 2 cut(s) 435, 644
TspDTI ATGAA 2 cut(s) 166, 177
TspRI CASTG 3 cut(s) 637, 709, 729
Van91I CCANNNNNTGG 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.