Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017398

Physical Location & Seq

Genomic Coordinates Forward (+)

13730360 .. 13731389

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACTTTTCCAGAGGCAACAACGTATCATCTTAATTCTATTATGTTTGACCATCTTCCTTTGTTAATGTATGTGAGGCCCAGTTATTGGGAGAAGAGGAAGAGGCAATTTTTGTTTGAGGAGATGTGGACTATTGTTGAGGGTTGTCAGGAAACCATCACTCATGCTTTGGAGTATGAACATGGAACTGTAGTAGAGAAATTAAAGGCCTGTCAAGGGTCCTTGTGGACATGGAATAATGAACAGTGCACGTCTATTGAAAGCATTCGTATTACTTTTTGTGATTATTTTCAAGGTTTGTTTACTTGTAATGGATTAAATGAGTCACCGGTAGTTACTGAGGTGGTCAAGCTGATGATCACTCAAGCTCAGAATATGCACCTCAATCAAGCTTTCTTACAGGAGGAAATTGAAACTGCATTGAGACAAATGTTCCCTACTAAGTCTCCAAGAGTGGATGGTGATGATGTGGTTGACTTCTACCTTGATGTCTTGAATGGGGGCACAAAAAAAGTTAATCACACACTTCTGACTCTTATTCCTAAGGTGGACAAGCCAACGAAAGTCACTGAGTTTCAGCCGATTAGTTTCTGTATGGTGATTTACAAGATGATTTGCAAGATAATAGTTAACAGGTTGAAGCCCATTATGCCCCTTATCATCTTGGAGTTTCAGAGCACTTTTTTATCCCTACATGGTGTTATGAAAAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

239

Amino Acids

27.7

Weight (kDa)

6.17

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017398)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G156100_v2.0.a1
rosa_laevigata	RLG00000001597 RLG00000032654
rosa_multiflora	Rmu_sc0000410.1_g000005 Rmu_sc0000966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00154650 Rroxscaffold_5G00360480
rosa_rugosa	Rorug02G0116100
rosa_samantha	Rh1CG381700 Rh5AG148200 Rh5AG330700 Rh6AG395300 Rh7AG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	87, 216
AgeI	ACCGGT	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	260, 293, 413, 496, 640
AjiI	CACGTC	1 cut(s)	252
AluBI	AGCT	3 cut(s)	352, 368, 392
AluI	AGCT	3 cut(s)	352, 368, 392
Alw21I	GWGCWC	2 cut(s)	251, 680
Alw26I	GTCTC	2 cut(s)	418, 450
Alw44I	GTGCAC	1 cut(s)	247
AoxI	GGCC	2 cut(s)	77, 207
ApaLI	GTGCAC	1 cut(s)	247
AsiGI	ACCGGT	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	78, 219
AsuHPI	GGTGA	3 cut(s)	318, 473, 610
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	2 cut(s)	251, 506
Bbv12I	GWGCWC	2 cut(s)	251, 680
BccI	CCATC	3 cut(s)	60, 164, 452
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	418, 450
BfmI	CTRYAG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	78, 219
BmiI	GGNNCC	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 216
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	543
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	87, 216
BseMII	CTCAG	3 cut(s)	330, 383, 561
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	2 cut(s)	251, 506
BshFI	GGCC	2 cut(s)	79, 209
BshTI	ACCGGT	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	251, 680
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	87, 216
BsmAI	GTCTC	2 cut(s)	418, 450
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	79, 209
Bsp1286I	GDGCHC	3 cut(s)	251, 506, 680
Bsp143I	GATC	1 cut(s)	357
BspANI	GGCC	2 cut(s)	79, 209
BspCNI	CTCAG	3 cut(s)	331, 382, 562
BspLI	GGNNCC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	328
BssMI	GATC	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	190, 246
Bst6I	CTCTTC	2 cut(s)	89, 95
BstDEI	CTNAG	5 cut(s)	339, 369, 441, 543, 570
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	2 cut(s)	418, 450
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	251, 506
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	79, 209
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	251, 567
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	78, 219
CspAI	ACCGGT	1 cut(s)	328
CviAII	CATG	4 cut(s)	164, 182, 231, 695
CviJI	RGCY	8 cut(s)	79, 209, 352, 368, 392, 556, 580, 643
CviKI_1	RGCY	8 cut(s)	79, 209, 352, 368, 392, 556, 580, 643
DdeI	CTNAG	5 cut(s)	339, 369, 441, 543, 570
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	89, 95
EarI	CTCTTC	2 cut(s)	89, 95
Eco147I	AGGCCT	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	219
FaeI	CATG	4 cut(s)	167, 185, 234, 698
FatI	CATG	4 cut(s)	163, 181, 230, 694
FbaI	TGATCA	1 cut(s)	357
FokI	GGATG	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	79, 209
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	4 cut(s)	167, 185, 234, 698
HincII	GTYRAC	2 cut(s)	475, 631
HindII	GTYRAC	2 cut(s)	475, 631
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	2 cut(s)	323, 532
HpaI	GTTAAC	1 cut(s)	631
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	3 cut(s)	318, 473, 610
Hpy166II	GTNNAC	7 cut(s)	129, 228, 249, 303, 475, 550, 631
Hpy188I	TCNGA	3 cut(s)	372, 531, 675
Hpy188III	TCNNGA	3 cut(s)	11, 149, 493
Hpy8I	GTNNAC	7 cut(s)	129, 228, 249, 303, 475, 550, 631
HpyCH4III	ACNGT	2 cut(s)	190, 246
HpyCH4IV	ACGT	2 cut(s)	23, 251
HpyCH4V	TGCA	4 cut(s)	249, 379, 419, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	649
HpyF3I	CTNAG	5 cut(s)	339, 369, 441, 543, 570
HpySE526I	ACGT	2 cut(s)	23, 251
Hsp92II	CATG	4 cut(s)	167, 185, 234, 698
Ksp22I	TGATCA	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	631
Kzo9I	GATC	1 cut(s)	357
LpnPI	CCDG	7 cut(s)	24, 94, 134, 223, 342, 386, 619
MaeII	ACGT	2 cut(s)	23, 251
MaeIII	GTNAC	3 cut(s)	324, 334, 565
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	3 cut(s)	47, 106, 112
MhlI	GDGCHC	3 cut(s)	251, 506, 680
MluCI	AATT	4 cut(s)	34, 107, 200, 408
MlyI	GAGTC	2 cut(s)	332, 526
MnlI	CCTC	9 cut(s)	7, 69, 90, 96, 112, 133, 334, 392, 397
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	6 cut(s)	33, 65, 203, 317, 516, 630
MspI	CCGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	649
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	167, 185, 234, 698
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	324, 565
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	328
PleI	GAGTC	2 cut(s)	331, 526
PpsI	GAGTC	2 cut(s)	331, 526
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	78, 219
PspPPI	RGGWCCY	1 cut(s)	219
SaqAI	TTAA	6 cut(s)	33, 65, 203, 317, 516, 630
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	78, 219
SchI	GAGTC	2 cut(s)	332, 526
SduI	GDGCHC	3 cut(s)	251, 506, 680
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	34, 107, 200, 408
SseBI	AGGCCT	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	190, 246
TaiI	ACGT	2 cut(s)	26, 254
TasI	AATT	4 cut(s)	34, 107, 200, 408
Tru1I	TTAA	6 cut(s)	33, 65, 203, 317, 516, 630
Tru9I	TTAA	6 cut(s)	33, 65, 203, 317, 516, 630
TscAI	CASTG	2 cut(s)	251, 574
TseFI	GTSAC	2 cut(s)	324, 565
Tsp45I	GTSAC	2 cut(s)	324, 565
TspDTI	ATGAA	2 cut(s)	192, 255
TspRI	CASTG	2 cut(s)	251, 574
Van91I	CCANNNNNTGG	1 cut(s)	87
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.