Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017398

Physical Location & Seq

Genomic Coordinates Forward (+)

17343324 .. 17344887

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAAGGGATTTCATGCAACAATCGAACTGGCCACGTCGTGCAAAGATGGACCTCCAGAACACATATTATCATGAACATGATGAAGGTGAAGAGTTGGACTTGCTGGCTCATAAGCATACATCGTTGGGGGGAGAATTGCCTGCCTCCTTAGGAATGCTAAAAAATCTGCAGGAACTGAAGCTCCGCAACAACTCTTTTTGGGGTTCAATTCCAAATTCTATTGGAAACTTGTCATCCTTGAAAACACTTGACCTCGCTTTCAATCATATGAACGGGTCCATTCCTGAAAGTCTGGGGCTTCTCTCCCAGCTAGCTGACCTAGACCTGTCGTGGAATTCTTGGGAGGGAAATTTAACCGAAACACATTTCACAAACCTCGCAAGGTTAGAGTCCTTTCATGTAAGCACAGACCAACCTATGCCCCTCATTTTCAAGTTGTTTAATGGCTGGATTCCTCCTTTCCAGCTCCATACGGTTGACATTCAAAACTGCACGGTAGGTCCTGCCTTCCCAGTATGGCTTCAATCTCAGACTAACCTAGTCTATATCACTGTTGCTGGTGCCAAAATCTCGGGGTCCATACCAGAGAAATGGTTGTTGAAGAGAAGCAGAACATCAAATGTCATCGGGCCCGAAATCAGAATTCTCGAAGAGGACGCTGGAGTGGAGGAGGCCAGGGCAGAAGATGGAGAGCTTGTGGAGGGAGGACCAGCCGCCGGGAGACTCGGAGGAGGCGGCGGAGACAAGATCGAAGACTACGGAGCAAGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

259

Amino Acids

28.67

Weight (kDa)

5.02

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	33 - 186	7.9e-16	Leucine-rich repeat region
LRR_8	PF13855	56 - 113	6.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017398)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G156100_v2.0.a1
rosa_laevigata	RLG00000001597 RLG00000032654
rosa_multiflora	Rmu_sc0000410.1_g000005 Rmu_sc0000966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00154650 Rroxscaffold_5G00360480
rosa_rugosa	Rorug02G0116100
rosa_samantha	Rh1CG381700 Rh5AG148200 Rh5AG330700 Rh6AG395300 Rh7AG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	563
AciI	CCGC	4 cut(s)	187, 717, 738, 741
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	4 cut(s)	217, 337, 352, 645
AcuI	CTGAAG	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	7 cut(s)	210, 244, 265, 436, 488, 527, 604
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	677
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	5 cut(s)	184, 313, 317, 469, 697
AluI	AGCT	5 cut(s)	184, 313, 317, 469, 697
Alw26I	GTCTC	2 cut(s)	718, 738
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	3 cut(s)	32, 632, 675
ApaI	GGGCCC	1 cut(s)	636
ApoI	RAATTY	4 cut(s)	217, 337, 352, 645
AspS9I	GGNCC	7 cut(s)	52, 279, 503, 579, 632, 633, 710
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	1 cut(s)	101
AsuNHI	GCTAGC	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	5 cut(s)	52, 279, 503, 579, 710
AxyI	CCTNAGG	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	636
BalI	TGGCCA	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	762
BccI	CCATC	2 cut(s)	43, 683
BciT130I	CCWGG	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	718, 738
BfaI	CTAG	3 cut(s)	314, 323, 542
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	717, 739
BlsI	GCNGC	2 cut(s)	718, 740
Bme1390I	CCNGG	2 cut(s)	679, 721
Bme18I	GGWCC	5 cut(s)	52, 279, 503, 579, 710
BmeT110I	CYCGRG	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	7 cut(s)	52, 279, 503, 579, 632, 633, 710
BmiI	GGNNCC	4 cut(s)	280, 565, 580, 634
BmrFI	CCNGG	2 cut(s)	679, 721
BmrI	ACTGGG	1 cut(s)	509
BmtI	GCTAGC	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	41, 684
BpuMI	CCSGG	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	678
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 684, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	35, 515
Bse21I	CCTNAGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	2 cut(s)	35, 515
BseRI	GAGGAG	2 cut(s)	686, 747
BseSI	GKGCMC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	34, 634, 677
BshNI	GGYRCC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	718, 738
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	34, 634, 677
BsoBI	CYCGRG	1 cut(s)	574
Bsp120I	GGGCCC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	1 cut(s)	750
BspACI	CCGC	4 cut(s)	187, 717, 738, 741
BspANI	GGCC	3 cut(s)	34, 634, 677
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	4 cut(s)	280, 565, 580, 634
BspMAI	CTGCAG	1 cut(s)	174
BspOI	GCTAGC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	35, 515
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	3 cut(s)	478, 499, 556
Bst6I	CTCTTC	3 cut(s)	87, 599, 648
BstC8I	GCNNGC	3 cut(s)	108, 144, 315
BstDEI	CTNAG	2 cut(s)	151, 531
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	753
BstMAI	GTCTC	2 cut(s)	718, 738
BstMBI	GATC	1 cut(s)	750
BstNI	CCWGG	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	677, 719
BstSFI	CTRYAG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	762
BstXI	CCANNNNNNTGG	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	34, 634, 677
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	108, 144, 315
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	7 cut(s)	52, 279, 503, 579, 632, 633, 710
CseI	GACGC	1 cut(s)	668
CviAII	CATG	4 cut(s)	16, 74, 80, 401
DdeI	CTNAG	2 cut(s)	151, 531
DpnI	GATC	1 cut(s)	752
DpnII	GATC	1 cut(s)	750
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	3 cut(s)	87, 599, 648
EarI	CTCTTC	3 cut(s)	87, 599, 648
EciI	GGCGGA	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	5 cut(s)	52, 279, 503, 579, 710
Eco57I	CTGAAG	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRI	GAATTC	2 cut(s)	337, 645
EcoRII	CCWGG	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	4 cut(s)	19, 77, 83, 404
FatI	CATG	4 cut(s)	15, 73, 79, 400
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	717, 739
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	2 cut(s)	717, 739
FspBI	CTAG	3 cut(s)	314, 323, 542
GluI	GCNGC	2 cut(s)	717, 739
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	2 cut(s)	41, 684
HaeIII	GGCC	3 cut(s)	34, 634, 677
HapII	CCGG	1 cut(s)	720
HgaI	GACGC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	19, 77, 83, 404
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	392, 454, 726
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	534, 644, 731
Hpy188III	TCNNGA	4 cut(s)	58, 74, 287, 650
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	80, 520
HpyCH4III	ACNGT	3 cut(s)	478, 499, 556
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	19, 44, 172, 495
HpyF3I	CTNAG	2 cut(s)	151, 531
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	4 cut(s)	19, 77, 83, 404
Kzo9I	GATC	1 cut(s)	750
LmnI	GCTCC	3 cut(s)	189, 474, 764
MaeI	CTAG	3 cut(s)	314, 323, 542
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	752
MboI	GATC	1 cut(s)	750
MboII	GAAGA	5 cut(s)	104, 616, 665, 698, 767
MhlI	GDGCHC	1 cut(s)	636
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	6 cut(s)	137, 210, 217, 337, 352, 645
MluNI	TGGCCA	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	401, 720
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	2 cut(s)	356, 444
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	2 cut(s)	679, 721
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	679
NciI	CCSGG	1 cut(s)	721
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	1 cut(s)	750
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	4 cut(s)	19, 77, 83, 404
NlaIV	GGNNCC	4 cut(s)	280, 565, 580, 634
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	718, 740
PleI	GAGTC	2 cut(s)	400, 720
PpsI	GAGTC	2 cut(s)	400, 720
PpuMI	RGGWCCY	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	677
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	4 cut(s)	280, 565, 580, 634
PspOMI	GGGCCC	1 cut(s)	632
PspPI	GGNCC	7 cut(s)	52, 279, 503, 579, 632, 633, 710
PspPPI	RGGWCCY	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	356, 444
SatI	GCNGC	2 cut(s)	717, 739
Sau3AI	GATC	1 cut(s)	750
Sau96I	GGNCC	7 cut(s)	52, 279, 503, 579, 632, 633, 710
SchI	GAGTC	2 cut(s)	401, 720
ScrFI	CCNGG	2 cut(s)	679, 721
SduI	GDGCHC	1 cut(s)	636
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	5 cut(s)	52, 279, 503, 579, 710
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	6 cut(s)	137, 210, 217, 337, 352, 645
SsiI	CCGC	4 cut(s)	187, 717, 738, 741
SspMI	CTAG	3 cut(s)	314, 323, 542
StyD4I	CCNGG	2 cut(s)	677, 719
TaaI	ACNGT	3 cut(s)	478, 499, 556
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	26, 651, 753
TasI	AATT	6 cut(s)	137, 210, 217, 337, 352, 645
TauI	GCSGC	2 cut(s)	719, 741
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	356, 444
Tru9I	TTAA	2 cut(s)	356, 444
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	4, 90, 99, 287, 389
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	5 cut(s)	52, 279, 503, 579, 710
XapI	RAATTY	4 cut(s)	217, 337, 352, 645
XspI	CTAG	3 cut(s)	314, 323, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.