Rh1CG381700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017398
Physical Location & Seq
Reverse (-)
65159122 .. 65159451
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG381700.1

Sequence Viewer

Length: 330 bp
ATGGTTGATGTTCTGGTTATTGGGTTTGTGATTGTGACTGGGTGTGTTCACATTGAAGAGAAGCAAAACATCAAATGTCATTGGGCCGATTGGGATTTGGGGGCGGTGGTTGGTGAATTTGGCTGGATGTGGGCTCCAATTGGGATTGGGGGCGGTAACTGTCATCGGGTGGAGCTCGCATTCGAGGTCGAAATCAGAATTCTCGAAGAGGACGCCGGAGTGGAGGAGGCCGGGGCAGAAGATGGCGAGCTTGTGGAGGGAGGACCAGCCGCCGGGAGGCTCGGAGGAGGCGGCGAAGACAAGATCGGAGACGACGAAGCAAGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.59

Weight (kDa)

4.2

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 104, 153, 270, 291
AcsI RAATTY 2 cut(s) 116, 198
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 272, 276
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 2 cut(s) 175, 250
AluI AGCT 2 cut(s) 175, 250
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 303
AoxI GGCC 2 cut(s) 84, 228
ApoI RAATTY 2 cut(s) 116, 198
AspS9I GGNCC 2 cut(s) 84, 263
AsuC2I CCSGG 2 cut(s) 232, 274
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 136, 177
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 1 cut(s) 236
BcnI CCSGG 2 cut(s) 232, 274
BcoDI GTCTC 1 cut(s) 303
BisI GCNGC 2 cut(s) 270, 292
BlsI GCNGC 2 cut(s) 271, 293
Bme1390I CCNGG 2 cut(s) 232, 274
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 84, 263
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 232, 274
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 232, 274
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 276
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 272, 276
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 239, 300
BshFI GGCC 2 cut(s) 86, 230
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 3 cut(s) 216, 231, 273
BslI CCNNNNNNNGG 2 cut(s) 272, 276
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 86, 230
Bsp1286I GDGCHC 2 cut(s) 136, 177
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 4 cut(s) 104, 153, 270, 291
BspANI GGCC 2 cut(s) 86, 230
BspLI GGNNCC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 51, 201
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 177, 248
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 230, 272
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 86, 230
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 177, 248
Cfr13I GGNCC 2 cut(s) 84, 263
CseI GACGC 1 cut(s) 221
CviJI RGCY 8 cut(s) 86, 123, 134, 175, 230, 250, 269, 280
CviKI_1 RGCY 8 cut(s) 86, 123, 134, 175, 230, 250, 269, 280
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 51, 201
EarI CTCTTC 2 cut(s) 51, 201
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 136, 177
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 136, 177
Esp3I CGTCTC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 270, 292
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 2 cut(s) 136, 177
Fsp4HI GCNGC 2 cut(s) 270, 292
GluI GCNGC 2 cut(s) 270, 292
HaeIII GGCC 2 cut(s) 86, 230
HapII CCGG 3 cut(s) 216, 231, 273
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 213
HpaII CCGG 3 cut(s) 216, 231, 273
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 197, 284, 308
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 139, 172
LpnPI CCDG 6 cut(s) 24, 109, 229, 244, 279, 286
MaeIII GTNAC 2 cut(s) 34, 155
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 4 cut(s) 68, 218, 251, 308
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 136, 177
MluCI AATT 3 cut(s) 116, 138, 198
MnlI CCTC 9 cut(s) 178, 202, 217, 220, 250, 254, 270, 278, 281
MspI CCGG 3 cut(s) 216, 231, 273
MspR9I CCNGG 2 cut(s) 232, 274
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 179
NciI CCSGG 2 cut(s) 232, 274
NdeII GATC 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 271, 293
Psp124BI GAGCTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 84, 263
SacI GAGCTC 1 cut(s) 177
SatI GCNGC 2 cut(s) 270, 292
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 2 cut(s) 84, 263
ScrFI CCNGG 2 cut(s) 232, 274
SduI GDGCHC 2 cut(s) 136, 177
SetI ASST 4 cut(s) 177, 189, 252, 326
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 116, 138, 198
SsiI CCGC 4 cut(s) 104, 153, 270, 291
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 230, 272
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 183, 189, 204
TasI AATT 3 cut(s) 116, 138, 198
TauI GCSGC 2 cut(s) 272, 294
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 116, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.