Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017398

Physical Location & Seq

Genomic Coordinates Reverse (-)

68457391 .. 68457723

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG485300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCCTCCATATCCTATTGGTACTCCTCCACGACCAGCCGATCCGGACACCAACATCGACGACGACGATGCCGCCGCAGCCGTCGATTTCGAAGACGACAAGGATCACCATCCCCAAAACAGCGCCGTTGTTTTCCCACTCGCAGCTGCTCCCCAACGGCAAATTGTGAACCAGGGGCAGAGGGGAGTGTCGTCACTCAGATTAAACAACAACGTTGAGGGTTATAGGCGGCTGCTGGCGGAGGTGGCATCGGAGTCGCAGTGGCGGAAGTGGTCGAGCGGCCTTGATGGTGGCGGTGGCTGTGCGTTCATCGACGGCTTGGGTAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.81

Weight (kDa)

4.59

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017398)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G156100_v2.0.a1
rosa_laevigata	RLG00000001597 RLG00000032654
rosa_multiflora	Rmu_sc0000410.1_g000005 Rmu_sc0000966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00154650 Rroxscaffold_5G00360480
rosa_rugosa	Rorug02G0116100
rosa_samantha	Rh1CG381700 Rh5AG148200 Rh5AG330700 Rh6AG395300 Rh7AG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	7 cut(s)	72, 75, 229, 239, 265, 279, 294
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	2 cut(s)	35, 111
AfaI	GTAC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	2 cut(s)	35, 111
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	77, 143, 146, 232
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	98
AsuII	TTCGAA	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	89, 133, 155, 219
BccI	CCATC	2 cut(s)	117, 281
BceAI	ACGGC	4 cut(s)	65, 110, 173, 331
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 237, 271
BciT130I	CCWGG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	8 cut(s)	72, 75, 78, 144, 147, 230, 233, 280
BlsI	GCNGC	8 cut(s)	73, 76, 79, 145, 148, 231, 234, 281
Bme1390I	CCNGG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	58, 257
BpiI	GAAGAC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	89, 133, 155, 219
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	40, 103
BspACI	CCGC	7 cut(s)	72, 75, 229, 239, 265, 279, 294
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	43
BspPI	GGATC	2 cut(s)	35, 111
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	40, 103
Bst2UI	CCWGG	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	43, 106
BstMBI	GATC	2 cut(s)	40, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 245
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	89, 133, 155, 219
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	7 cut(s)	38, 80, 146, 232, 282, 300, 318
CviKI_1	RGCY	7 cut(s)	38, 80, 146, 232, 282, 300, 318
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	42, 105
DpnII	GATC	2 cut(s)	40, 103
EciI	GGCGGA	2 cut(s)	254, 280
EcoRII	CCWGG	1 cut(s)	171
FaiI	YATR	2 cut(s)	10, 225
Fnu4HI	GCNGC	8 cut(s)	72, 75, 78, 144, 147, 230, 233, 280
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	8 cut(s)	72, 75, 78, 144, 147, 230, 233, 280
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	8 cut(s)	72, 75, 78, 144, 147, 230, 233, 280
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	200, 253
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 86, 317
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 245
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	213
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	40, 103
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	48, 57, 158, 185, 221
Lsp1109I	GCAGC	4 cut(s)	89, 133, 155, 219
LweI	GCATC	2 cut(s)	58, 257
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	42, 105
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	2 cut(s)	40, 103
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	15, 36, 174, 211, 235
MroI	TCCGGA	1 cut(s)	43
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	77, 245
NdeII	GATC	2 cut(s)	40, 103
NmuCI	GTSAC	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	8 cut(s)	73, 76, 79, 145, 148, 231, 234, 281
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	8 cut(s)	72, 75, 78, 144, 147, 230, 233, 280
Sau3AI	GATC	2 cut(s)	40, 103
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	3 cut(s)	148, 216, 246
SfaNI	GCATC	2 cut(s)	58, 257
SfuI	TTCGAA	1 cut(s)	90
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	7 cut(s)	72, 75, 229, 239, 265, 279, 294
StyD4I	CCNGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	57, 84, 90, 275, 312
TasI	AATT	1 cut(s)	162
TauI	GCSGC	4 cut(s)	74, 77, 232, 282
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	4 cut(s)	77, 143, 146, 232
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.