RLG00000001597

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017398
Physical Location & Seq
Reverse (-)
17973823 .. 17976436
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001597

Sequence Viewer

Length: 381 bp
ATGAACCAGGGGCAGAGGGGAGTGTCGCTCCTCAGATTAAACGACGACGTCGAGGGTTATGGGCTGCTGCTGGTGGAGGTGGCGTCGGAGTCGCAGTGGCGGAAGTGGTCGAGCGGCCTTGATGGTGGCGGTGGCCGTGCGTTTATCGACGGCTTGGAGAAGCAGAACGGCGAGCTCGTGGAGGGAGGACCAGCCGCCTGGAGGCTCGGAGAAGGCGGCGGAGACAAGATCGGAGACGACGAAGCAATGAAGCAACCAGGATCCATTAGGTTGTTTCCGGAACCCCCAATACTCTCATCATCATCATCATCATCAACATCACTCCCCCCCCCCAACCAGATTCCCTCTACAGGTGGTAGTGATACTGGATTCCGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.22

Weight (kDa)

4.55

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 7 cut(s) 100, 114, 129, 195, 216, 219, 373
AclWI GGATC 2 cut(s) 255, 268
AcoI YGGCCR 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 48, 83
AfiI CCNNNNNNNGG 2 cut(s) 201, 350
AjnI CCWGG 3 cut(s) 6, 197, 256
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 216, 228
AlwI GGATC 2 cut(s) 255, 268
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 115, 133
ApeKI GCWGC 2 cut(s) 64, 67
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BamHI GGATCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 51, 54
BccI CCATC 1 cut(s) 116
BceAI ACGGC 3 cut(s) 120, 166, 184
BciT130I CCWGG 3 cut(s) 8, 199, 258
BcoDI GTCTC 2 cut(s) 216, 228
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 5 cut(s) 65, 68, 115, 195, 217
BlsI GCNGC 5 cut(s) 66, 69, 116, 196, 218
Bme1390I CCNGG 3 cut(s) 8, 199, 258
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 262, 282
BmrFI CCNGG 3 cut(s) 8, 199, 258
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpmI CTGGAG 1 cut(s) 220
BsaHI GRCGYC 2 cut(s) 48, 83
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 4 cut(s) 68, 80, 98, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 350
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 3 cut(s) 8, 199, 258
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 201, 350
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 51, 54
BshFI GGCC 2 cut(s) 117, 135
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 201, 350
BsmAI GTCTC 2 cut(s) 216, 228
BsmBI CGTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 117, 135
Bsp1286I GDGCHC 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 228, 260
BspACI CCGC 7 cut(s) 100, 114, 129, 195, 216, 219, 373
BspANI GGCC 2 cut(s) 117, 135
BspCNI CTCAG 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 262, 282
BspPI GGATC 2 cut(s) 255, 268
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 228, 260
BssNI GRCGYC 2 cut(s) 48, 83
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 3 cut(s) 8, 199, 258
BstACI GRCGYC 2 cut(s) 48, 83
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 32
BstKTI GATC 2 cut(s) 231, 263
BstMAI GTCTC 2 cut(s) 216, 228
BstMBI GATC 2 cut(s) 228, 260
BstNI CCWGG 3 cut(s) 8, 199, 258
BstSCI CCNGG 3 cut(s) 6, 197, 256
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 51, 54
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 198
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 2 cut(s) 117, 135
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 1 cut(s) 72
CviJI RGCY 7 cut(s) 64, 117, 135, 153, 175, 194, 205
CviKI_1 RGCY 7 cut(s) 64, 117, 135, 153, 175, 194, 205
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 230, 262
DpnII GATC 2 cut(s) 228, 260
EaeI YGGCCR 1 cut(s) 133
EciI GGCGGA 2 cut(s) 115, 234
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 6, 197, 256
EcoT38I GRGCYC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 228
FaiI YATR 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 65, 68, 115, 195, 217
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 5 cut(s) 65, 68, 115, 195, 217
GluI GCNGC 5 cut(s) 65, 68, 115, 195, 217
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 2 cut(s) 117, 135
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 48, 83
HinfI GANTC 3 cut(s) 89, 340, 369
HpaII CCGG 1 cut(s) 278
Hpy188I TCNGA 4 cut(s) 35, 88, 209, 233
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 6 cut(s) 47, 50, 53, 88, 152, 242
HpyAV CCTTC 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 48, 83
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 228, 260
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 2 cut(s) 51, 54
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 230, 262
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 228, 260
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 8 cut(s) 9, 41, 46, 70, 175, 179, 195, 355
MroI TCCGGA 1 cut(s) 277
MseI TTAA 2 cut(s) 38, 379
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 3 cut(s) 8, 199, 258
MvaI CCWGG 3 cut(s) 8, 199, 258
NdeII GATC 2 cut(s) 228, 260
NlaIV GGNNCC 2 cut(s) 262, 282
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 174, 237
PfeI GAWTC 2 cut(s) 340, 369
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 5 cut(s) 66, 69, 116, 196, 218
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 6, 197, 256
PspGI CCWGG 3 cut(s) 6, 197, 256
PspN4I GGNNCC 2 cut(s) 262, 282
PspPI GGNCC 1 cut(s) 188
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 38, 379
SatI GCNGC 5 cut(s) 65, 68, 115, 195, 217
Sau3AI GATC 2 cut(s) 228, 260
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 8, 199, 258
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 51, 81, 177, 272, 355
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 188
SsiI CCGC 7 cut(s) 100, 114, 129, 195, 216, 219, 373
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 6, 197, 256
TaiI ACGT 1 cut(s) 51
TaqI TCGA 3 cut(s) 51, 110, 147
TauI GCSGC 3 cut(s) 117, 197, 219
TfiI GAWTC 2 cut(s) 340, 369
Tru1I TTAA 2 cut(s) 38, 379
Tru9I TTAA 2 cut(s) 38, 379
TscAI CASTG 1 cut(s) 101
TseI GCWGC 2 cut(s) 64, 67
TspDTI ATGAA 2 cut(s) 17, 263
TspRI CASTG 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 188
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.