Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017398

Physical Location & Seq

Genomic Coordinates Forward (+)

15525871 .. 15526368

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG148200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCTCCATATCCTATTGGTACTCCTCCACGACCAGCCGATCCAGACACTAAAATTGACGACGACGATGCCACCGCAGCCGTCGATTTCGAAGACGACAAGGATTACCATCCCCAAAACGACGCCGTTGTTTTCCCACTCGCAGCTGCTCCCCAACGGCGAATTGTGAACCAGGGGCAGAGGGGAGTGTCGTCACTCAGATTAAACAACGACGTTGAGGGTTATGGGCGGCTGCTGGCGGAGGTGGCGTCGGAGTCGCAGTGGCGGAAGTGGTCGAGCGGCCTTGATGGTGGCGGTAGCTGTGTGTTCATCGACGGCTTGGAGAAGCAAAACGGCGAGCTTGTGGAGGGAGGACCAGCCGCCGGGACTCTCGGAGAAGGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.55

Weight (kDa)

4.29

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017398)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G156100_v2.0.a1
rosa_laevigata	RLG00000001597 RLG00000032654
rosa_multiflora	Rmu_sc0000410.1_g000005 Rmu_sc0000966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00154650 Rroxscaffold_5G00360480
rosa_rugosa	Rorug02G0116100
rosa_samantha	Rh1CG381700 Rh5AG148200 Rh5AG330700 Rh6AG395300 Rh7AG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	8 cut(s)	75, 229, 239, 265, 279, 294, 360, 381
AclWI	GGATC	1 cut(s)	35
AcyI	GRCGYC	2 cut(s)	123, 248
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	146, 300, 340
AluI	AGCT	3 cut(s)	146, 300, 340
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	77, 143, 146, 232
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	89, 133, 155, 219
BccI	CCATC	2 cut(s)	117, 281
BceAI	ACGGC	5 cut(s)	65, 110, 173, 331, 349
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	364
BisI	GCNGC	8 cut(s)	78, 144, 147, 230, 233, 280, 360, 382
BlsI	GCNGC	8 cut(s)	79, 145, 148, 231, 234, 281, 361, 383
Bme1390I	CCNGG	2 cut(s)	173, 364
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	173, 364
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	123, 248
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 245, 263, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	89, 133, 155, 219
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	8 cut(s)	75, 229, 239, 265, 279, 294, 360, 381
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	210
BspPI	GGATC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	2 cut(s)	123, 248
Bst2UI	CCWGG	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	123, 248
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	237, 338
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 245
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	171, 362
BstV1I	GCAGC	4 cut(s)	89, 133, 155, 219
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	237, 338
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	131, 237
Csp6I	GTAC	1 cut(s)	21
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EciI	GGCGGA	2 cut(s)	254, 280
Eco47I	GGWCC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	171
FaiI	YATR	2 cut(s)	10, 225
FaqI	GGGAC	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	78, 144, 147, 230, 233, 280, 360, 382
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	8 cut(s)	78, 144, 147, 230, 233, 280, 360, 382
GluI	GCNGC	8 cut(s)	78, 144, 147, 230, 233, 280, 360, 382
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	2 cut(s)	131, 237
Hin1I	GRCGYC	2 cut(s)	123, 248
HinfI	GANTC	2 cut(s)	254, 367
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	200, 253, 374
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	7 cut(s)	65, 68, 86, 125, 215, 253, 317
HpyAV	CCTTC	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 245
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	123, 248
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	48, 57, 158, 185, 221, 369, 376
Lsp1109I	GCAGC	4 cut(s)	89, 133, 155, 219
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	2 cut(s)	54, 162
MlyI	GAGTC	2 cut(s)	263, 361
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	15, 36, 174, 211, 235, 340, 344
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	173, 364
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	77, 245
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	90
PkrI	GCNGC	8 cut(s)	79, 145, 148, 231, 234, 281, 361, 383
PleI	GAGTC	2 cut(s)	262, 361
PpsI	GAGTC	2 cut(s)	262, 361
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	8 cut(s)	78, 144, 147, 230, 233, 280, 360, 382
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	2 cut(s)	263, 361
ScrFI	CCNGG	2 cut(s)	173, 364
SetI	ASST	5 cut(s)	148, 216, 246, 302, 342
SfaNI	GCATC	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	54, 162
SsiI	CCGC	8 cut(s)	75, 229, 239, 265, 279, 294, 360, 381
StyD4I	CCNGG	2 cut(s)	171, 362
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	84, 90, 275, 312
TasI	AATT	2 cut(s)	54, 162
TauI	GCSGC	4 cut(s)	232, 282, 362, 384
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	4 cut(s)	77, 143, 146, 232
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.