Rh6AG395300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017398
Physical Location & Seq
Reverse (-)
59376416 .. 59381751
5336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG395300.1

Sequence Viewer

Length: 345 bp
ATGGCGGTTTCGCTTCTGATGGTCTTCAGCCCTCTGCGATTGGGGTTCGGTGGATACGAGTTCGATGTTGGTCGAGAAGCAGATCGAACATCAAACGTCATTGGGCCGATTGGGATTGGGGGCGGCGGTAAGTGTCATCAGGCTGAGCTCGTATTTGAGGCTAAAATCAGAATTCTCGAAGAGGTCACCGGAGTGGAAGAGGCTGGGGCAGAAGATGGCGAGCTTGTGGAGGAAGGACCAGCCGCCGAGAGGCTCAGAGGAGGCAGTGGAGACAAGATAGGAGATGACGGAGGCGGGCCCAGTTGGGAGGGTTGTCCTCTAATTCTTGCAATTCGAAGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.9

Weight (kDa)

4.52

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 123, 126, 243, 294
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 249
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 2 cut(s) 148, 223
AluI AGCT 2 cut(s) 148, 223
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 2 cut(s) 104, 296
ApaI GGGCCC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 104, 236, 296, 297
AsuHPI GGTGA 1 cut(s) 178
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 150, 300
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 13, 209
BciVI GTATCC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 264
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 2 cut(s) 124, 243
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 2 cut(s) 125, 244
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 104, 236, 296, 297
BmiI GGNNCC 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 16
Bpu1102I GCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 334
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 135, 268
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 2 cut(s) 106, 298
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 106, 298
Bsp119I TTCGAA 1 cut(s) 334
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 150, 300
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 5 cut(s) 5, 123, 126, 243, 294
BspANI GGCC 2 cut(s) 106, 298
BspCNI CTCAG 2 cut(s) 136, 267
BspLI GGNNCC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 300
BssMI GATC 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 174, 192
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 221, 296
BstDEI CTNAG 2 cut(s) 144, 254
BstEII GGTNACC 1 cut(s) 184
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 82
BstPI GGTNACC 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 16
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 106, 298
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 221, 296
Cfr13I GGNCC 4 cut(s) 104, 236, 296, 297
DdeI CTNAG 2 cut(s) 144, 254
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 174, 192
EarI CTCTTC 2 cut(s) 174, 192
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 150, 300
Eco47I GGWCC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 150, 300
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 124, 243
FriOI GRGCYC 2 cut(s) 150, 300
Fsp4HI GCNGC 2 cut(s) 124, 243
GluI GCNGC 2 cut(s) 124, 243
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 2 cut(s) 106, 298
HapII CCGG 1 cut(s) 189
HinfI GANTC 1 cut(s) 339
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 18, 170, 257, 344
Hpy188III TCNNGA 2 cut(s) 74, 176
HpyAV CCTTC 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 144, 254
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 125, 189, 202, 252, 313
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 16, 191, 209, 224
MhlI GDGCHC 2 cut(s) 150, 300
MluCI AATT 3 cut(s) 171, 321, 330
MlyI GAGTC 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 189
NdeII GATC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 298
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 2 cut(s) 125, 244
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 298
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 4 cut(s) 104, 236, 296, 297
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 124, 243
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 4 cut(s) 104, 236, 296, 297
SchI GAGTC 1 cut(s) 333
SduI GDGCHC 2 cut(s) 150, 300
SetI ASST 4 cut(s) 99, 150, 186, 225
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 3 cut(s) 171, 321, 330
SsiI CCGC 5 cut(s) 5, 123, 126, 243, 294
SstI GAGCTC 1 cut(s) 150
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 63, 73, 85, 177, 334
TasI AATT 3 cut(s) 171, 321, 330
TauI GCSGC 2 cut(s) 126, 245
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.