Rmu_sc0000966.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000966.1
OG0017398
Physical Location & Seq
Forward (+)
59107 .. 62596
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000966.1_g000011.1.cds

Sequence Viewer

Length: 573 bp
atgaaccaggggcagaggggagtgtcgctcctcagattaaacgaccatgtcgagggttatgggtggctgctggcggaggtggcgtcggagtcgcagtggcggaagtggtcgagcggccttgatggtagcggtggccgtgcgttcatcaacggcttgggttctgcattgtcaccgacgggtgacgtctgtctcccacttctgataagtttgggtctcattggtagcgcttatgaggatttaatcctagagactatacctggggtggtgactgtggagatgaatgatgttttgattgctccatttacaagagctgagattgatcaggcactaaagcaaatggctctaaataaatcctcgagcattgacggtctttcagctttgttctatcaagaatattggagtgttgttggagatgacattgctgggttctgtctgagtgttctcaatgatggggcaaaagtctacacccttaatcatacgctaattgctcttataccaaagttggaaactccatgtaatgtcactgattatagaccgatcaacctatgtaatgtagtgtatgttgacttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

190

Amino Acids

20.55

Weight (kDa)

4.45

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccBSI CCGCTC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 462
AciI CCGC 4 cut(s) 74, 100, 114, 129
AcoI YGGCCR 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 83, 183
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 52
AjnI CCWGG 2 cut(s) 6, 256
AluBI AGCT 2 cut(s) 311, 377
AluI AGCT 2 cut(s) 311, 377
Alw26I GTCTC 3 cut(s) 194, 218, 242
Ama87I CYCGRG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 2 cut(s) 115, 133
ApeKI GCWGC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 162, 191, 277
AvaI CYCGRG 1 cut(s) 355
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 116, 443
BceAI ACGGC 2 cut(s) 120, 166
BciT130I CCWGG 2 cut(s) 8, 258
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 194, 218, 242
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 68, 115
BlsI GCNGC 2 cut(s) 69, 116
Bme1390I CCNGG 2 cut(s) 8, 258
BmeT110I CYCGRG 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 8, 258
BoxI GACNNNNGTC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BsaHI GRCGYC 2 cut(s) 83, 183
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 7, 257
BsaXI ACNNNNNCTCC 4 cut(s) 68, 80, 98, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 2 cut(s) 8, 258
BseDI CCNNGG 2 cut(s) 7, 257
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 46, 303, 425
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 2 cut(s) 117, 135
BsiHKCI CYCGRG 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 3 cut(s) 194, 218, 242
BsnI GGCC 2 cut(s) 117, 135
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 355
Bsp143I GATC 2 cut(s) 319, 537
BspACI CCGC 4 cut(s) 74, 100, 114, 129
BspANI GGCC 2 cut(s) 117, 135
BspCNI CTCAG 3 cut(s) 45, 304, 426
BspTNI GGTCTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 7, 257
BssMI GATC 2 cut(s) 319, 537
BssNI GRCGYC 2 cut(s) 83, 183
Bst2UI CCWGG 2 cut(s) 8, 258
Bst4CI ACNGT 2 cut(s) 271, 368
BstACI GRCGYC 2 cut(s) 83, 183
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 32, 312, 434
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 322, 540
BstMAI GTCTC 3 cut(s) 194, 218, 242
BstMBI GATC 2 cut(s) 319, 537
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 8, 258
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 6, 256
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 2 cut(s) 117, 135
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 522
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 227
CseI GACGC 1 cut(s) 72
CviAII CATG 2 cut(s) 47, 513
CviJI RGCY 7 cut(s) 67, 117, 135, 153, 311, 341, 377
CviKI_1 RGCY 7 cut(s) 67, 117, 135, 153, 311, 341, 377
DdeI CTNAG 3 cut(s) 32, 312, 434
DpnI GATC 2 cut(s) 321, 539
DpnII GATC 2 cut(s) 319, 537
EaeI YGGCCR 1 cut(s) 133
EciI GGCGGA 2 cut(s) 89, 115
Eco31I GGTCTC 1 cut(s) 218
Eco47III AGCGCT 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 6, 256
FaeI CATG 2 cut(s) 50, 516
FatI CATG 2 cut(s) 46, 512
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 68, 115
Fsp4HI GCNGC 2 cut(s) 68, 115
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 68, 115
GsaI CCCAGC 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 117, 135
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 2 cut(s) 83, 183
Hin1II CATG 2 cut(s) 50, 516
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 1 cut(s) 89
HphI GGTGA 3 cut(s) 162, 191, 277
Hpy166II GTNNAC 2 cut(s) 463, 565
Hpy188I TCNGA 4 cut(s) 35, 88, 201, 435
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 463, 565
Hpy99I CGWCG 2 cut(s) 88, 178
HpyCH4III ACNGT 2 cut(s) 271, 368
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 32, 312, 434
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 2 cut(s) 83, 183
Hsp92II CATG 2 cut(s) 50, 516
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 319, 537
LmnI GCTCC 2 cut(s) 33, 301
LpnPI CCDG 6 cut(s) 20, 56, 243, 270, 308, 408
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 168, 179, 265, 520
MalI GATC 2 cut(s) 321, 539
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 319, 537
MluCI AATT 1 cut(s) 483
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 3 cut(s) 66, 388, 483
MnlI CCTC 6 cut(s) 9, 41, 46, 70, 226, 364
MseI TTAA 3 cut(s) 38, 239, 471
MspR9I CCNGG 2 cut(s) 8, 258
MvaI CCWGG 2 cut(s) 8, 258
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 319, 537
NlaIII CATG 2 cut(s) 50, 516
NmuCI GTSAC 4 cut(s) 168, 179, 265, 520
PaeR7I CTCGAG 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 69, 116
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 6, 256
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 6, 256
PspXI VCTCGAGB 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 38, 239, 471
SatI GCNGC 2 cut(s) 68, 115
Sau3AI GATC 2 cut(s) 319, 537
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 8, 258
SetI ASST 6 cut(s) 81, 186, 259, 313, 379, 546
Sfr274I CTCGAG 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 1 cut(s) 483
SsiI CCGC 4 cut(s) 74, 100, 114, 129
SspI AATATT 1 cut(s) 395
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 6, 256
TaaI ACNGT 2 cut(s) 271, 368
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 51, 110, 356
TaqII GACCGA 1 cut(s) 550
TasI AATT 1 cut(s) 483
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 38, 239, 471
Tru9I TTAA 3 cut(s) 38, 239, 471
TscAI CASTG 2 cut(s) 101, 529
TseFI GTSAC 4 cut(s) 168, 179, 265, 520
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 4 cut(s) 168, 179, 265, 520
TspDTI ATGAA 3 cut(s) 17, 133, 293
TspRI CASTG 2 cut(s) 101, 529
Tth111I GACNNNGTC 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 245
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.