Prupe.6G164500_v2.0.a1

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011998
Physical Location & Seq
Reverse (-)
16096287 .. 16098559
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G164500.1

Sequence Viewer

Length: 390 bp
ATGGCACCAGCCAAGAAGGCCAAGGCCAAGACTAAGGCCAACCCGGCCGAGTCAACTCAGCCCGTAAACCCCAACAACAATTTCCCAACCTCTATTCGGTACATACCTCCGTCCTCAGTCGCCATCACCATCCACGCAAAGCCTGGTTCCAAAATCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGGGTACAAATAAACGCGTCTGCAAAGGACGGGGAAGCTAATGCAGCGCTACTTGACTACATCAGCTCGGTTTTAGGGGTAAAAAGAAGGCAGGTTTCTATTGGTTCTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTGGAGGAGATGACTCTACGAAGTGTTTTTGACATCCTACACAAAGCTTCGAAGTCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

130

Amino Acids

13.65

Weight (kDa)

9.82

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 2 cut(s) 101, 195
AfeI AGCGCT 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 204
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 227, 255, 374
AluI AGCT 3 cut(s) 227, 255, 374
Alw26I GTCTC 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 237
AoxI GGCC 4 cut(s) 18, 24, 36, 45
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 131, 137, 170
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 271
BglI GCCNNNNNGGC 2 cut(s) 17, 44
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 44, 144
BmiI GGNNCC 2 cut(s) 6, 148
BmrFI CCNGG 2 cut(s) 44, 144
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 129, 360
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 71, 129
BseRI GAGGAG 1 cut(s) 347
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 20, 26, 38, 47
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 4 cut(s) 20, 26, 38, 47
Bsp119I TTCGAA 1 cut(s) 377
BspANI GGCC 4 cut(s) 20, 26, 38, 47
BspCNI CTCAG 2 cut(s) 70, 128
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 6, 148
BspMI ACCTGC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 33, 57, 115
BstF5I GGATG 2 cut(s) 129, 360
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 306
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 17, 44, 233
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 42, 142
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 4 cut(s) 20, 26, 38, 47
BtsCI GGATG 2 cut(s) 129, 360
BtsIMutI CAGTG 2 cut(s) 165, 181
BveI ACCTGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 238
CseI GACGC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 100, 194
CviQI GTAC 2 cut(s) 100, 194
DdeI CTNAG 3 cut(s) 33, 57, 115
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 21
Eco47III AGCGCT 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaiI YATR 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 116, 347
Fsp4HI GCNGC 1 cut(s) 234
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 4 cut(s) 20, 26, 38, 47
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 238
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 50, 340
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 54, 67, 384
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 3 cut(s) 54, 67, 384
HpyAV CCTTC 2 cut(s) 10, 270
HpyCH4V TGCA 2 cut(s) 212, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 44, 233
HpyF3I CTNAG 3 cut(s) 33, 57, 115
HspAI GCGC 1 cut(s) 236
LpnPI CCDG 6 cut(s) 21, 57, 129, 156, 266, 282
Lsp1109I GCAGC 1 cut(s) 245
MluCI AATT 1 cut(s) 79
MluI ACGCGT 1 cut(s) 204
MlyI GAGTC 2 cut(s) 59, 334
MnlI CCTC 6 cut(s) 100, 117, 124, 169, 175, 325
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 44, 144
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 17, 44, 233
NciI CCSGG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 6, 148
NmeAIII GCCGAG 1 cut(s) 73
NspV TTCGAA 1 cut(s) 377
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 58, 334
PpsI GAGTC 2 cut(s) 58, 334
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 6, 148
RsaI GTAC 2 cut(s) 101, 195
RsaNI GTAC 2 cut(s) 100, 194
SatI GCNGC 1 cut(s) 234
SchI GAGTC 2 cut(s) 59, 334
ScrFI CCNGG 2 cut(s) 44, 144
SetI ASST 8 cut(s) 92, 109, 229, 257, 285, 321, 376, 389
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 377
Sse9I AATT 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 42, 142
StyI CCWWGG 1 cut(s) 21
TaqI TCGA 1 cut(s) 377
TasI AATT 1 cut(s) 79
TscAI CASTG 2 cut(s) 172, 181
TseI GCWGC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 2 cut(s) 172, 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.