Rw2G021780

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011998
Physical Location & Seq
Forward (+)
30290280 .. 30292134
1855 bp
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UTR
Exon/CDS
Intron
Rw2G021780.1

Sequence Viewer

Length: 396 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCTGCCGCCGCCGCCGCCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCATGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTGCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGGTTTTAGGTGTAAAAAGAAGGCAGGTTTCTATTGGATGTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTAGAGGAGATGACACTACAAAGTGTTTTTGACATTCTGGAGAGAGCTTCAAAGTGCAGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

131

Amino Acids

13.52

Weight (kDa)

9.07

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 41 - 112 9.7e-21 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 46, 274
AccI GTMKAC 1 cut(s) 59
AciI CCGC 6 cut(s) 42, 45, 48, 51, 72, 237
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 381
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 230, 377
AluI AGCT 2 cut(s) 230, 377
Alw26I GTCTC 1 cut(s) 309
AoxI GGCC 2 cut(s) 24, 30
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 121
BccI CCATC 3 cut(s) 134, 140, 173
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 309
BfuAI ACCTGC 2 cut(s) 46, 274
BisI GCNGC 5 cut(s) 42, 45, 48, 51, 237
BlsI GCNGC 5 cut(s) 43, 46, 49, 52, 238
Bme1390I CCNGG 2 cut(s) 89, 147
BmiI GGNNCC 2 cut(s) 6, 151
BmrFI CCNGG 2 cut(s) 89, 147
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 132, 302
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 106, 350
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 2 cut(s) 26, 32
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 2 cut(s) 26, 32
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 6 cut(s) 42, 45, 48, 51, 72, 237
BspANI GGCC 2 cut(s) 26, 32
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 6, 151
BspMI ACCTGC 2 cut(s) 46, 274
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 132, 302
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 50, 236
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 87, 145
BsuRI GGCC 2 cut(s) 26, 32
BtsCI GGATG 2 cut(s) 132, 302
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 3 cut(s) 168, 184, 394
BveI ACCTGC 2 cut(s) 46, 274
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 93
CviJI RGCY 8 cut(s) 5, 26, 32, 145, 150, 230, 303, 377
CviKI_1 RGCY 8 cut(s) 5, 26, 32, 145, 150, 230, 303, 377
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 94, 394
FatI CATG 1 cut(s) 92
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 5 cut(s) 42, 45, 48, 51, 237
FokI GGATG 2 cut(s) 119, 309
Fsp4HI GCNGC 5 cut(s) 42, 45, 48, 51, 237
GluI GCNGC 5 cut(s) 42, 45, 48, 51, 237
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 2 cut(s) 26, 32
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 96
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 2 cut(s) 56, 61
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 312, 368
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 2 cut(s) 125, 209
HpyAV CCTTC 2 cut(s) 10, 273
HpyCH4V TGCA 4 cut(s) 199, 215, 387, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 50, 236
HpyF3I CTNAG 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 10, 107, 155
LpnPI CCDG 8 cut(s) 21, 51, 102, 132, 159, 225, 269, 353
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 55, 65
MnlI CCTC 7 cut(s) 79, 120, 124, 127, 172, 178, 328
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 89, 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 50, 236
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 6, 151
NmeAIII GCCGAG 1 cut(s) 79
NspI RCATGY 1 cut(s) 96
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 5 cut(s) 43, 46, 49, 52, 238
PleI GAGTC 2 cut(s) 55, 64
PpsI GAGTC 2 cut(s) 55, 64
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 6, 151
PsyI GACNNNGTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SalI GTCGAC 1 cut(s) 58
SatI GCNGC 5 cut(s) 42, 45, 48, 51, 237
Sau3AI GATC 1 cut(s) 201
SchI GAGTC 2 cut(s) 55, 65
ScrFI CCNGG 2 cut(s) 89, 147
SetI ASST 7 cut(s) 40, 112, 232, 271, 288, 324, 379
Sse9I AATT 1 cut(s) 82
SsiI CCGC 6 cut(s) 42, 45, 48, 51, 72, 237
StyD4I CCNGG 2 cut(s) 87, 145
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 59, 204, 246
TasI AATT 1 cut(s) 82
TauI GCSGC 5 cut(s) 44, 47, 50, 53, 239
TscAI CASTG 3 cut(s) 175, 184, 394
TspGWI ACGGA 2 cut(s) 94, 109
TspRI CASTG 3 cut(s) 175, 184, 394
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.