Rh2AG273600

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011998
Physical Location & Seq
Forward (+)
32606239 .. 32608314
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG273600.1

Sequence Viewer

Length: 309 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCTGCCGCCGCCGCCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCATGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTGCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGGTAAGGATTTTGGTTATTTGGAGATCGATTGGCTTTGTAATTCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

102

Amino Acids

10.53

Weight (kDa)

9.25

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 40 - 86 1.3e-10 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 56
AciI CCGC 5 cut(s) 42, 45, 48, 69, 234
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 214
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 2 cut(s) 24, 30
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 118
BccI CCATC 3 cut(s) 131, 137, 170
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 42, 45, 48, 234
BlsI GCNGC 4 cut(s) 43, 46, 49, 235
Bme1390I CCNGG 2 cut(s) 86, 144
BmiI GGNNCC 2 cut(s) 6, 148
BmrFI CCNGG 2 cut(s) 86, 144
BpuMI CCSGG 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 2 cut(s) 26, 32
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 2 cut(s) 26, 32
Bsp143I GATC 2 cut(s) 198, 281
BspACI CCGC 5 cut(s) 42, 45, 48, 69, 234
BspANI GGCC 2 cut(s) 26, 32
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 6, 148
BspMI ACCTGC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 198, 281
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 201, 284
BstMBI GATC 2 cut(s) 198, 281
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 233
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 84, 142
Bsu15I ATCGAT 1 cut(s) 284
BsuRI GGCC 2 cut(s) 26, 32
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 165, 181
BveI ACCTGC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 284
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 90, 306
CviJI RGCY 7 cut(s) 5, 26, 32, 142, 147, 227, 291
CviKI_1 RGCY 7 cut(s) 5, 26, 32, 142, 147, 227, 291
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 200, 283
DpnII GATC 2 cut(s) 198, 281
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 93, 309
FaiI YATR 3 cut(s) 91, 303, 307
FatI CATG 2 cut(s) 89, 305
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 4 cut(s) 42, 45, 48, 234
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 4 cut(s) 42, 45, 48, 234
GluI GCNGC 4 cut(s) 42, 45, 48, 234
HaeIII GGCC 2 cut(s) 26, 32
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 93, 309
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 53, 58
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 122, 206
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 196, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 233
HpyF3I CTNAG 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 93, 309
Kzo9I GATC 2 cut(s) 198, 281
LmnI GCTCC 3 cut(s) 10, 104, 152
LpnPI CCDG 6 cut(s) 21, 51, 99, 129, 156, 222
MalI GATC 2 cut(s) 200, 283
MboI GATC 2 cut(s) 198, 281
MboII GAAGA 1 cut(s) 25
MluCI AATT 2 cut(s) 79, 297
MlyI GAGTC 2 cut(s) 52, 62
MnlI CCTC 6 cut(s) 76, 117, 121, 124, 169, 175
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 233
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 198, 281
NlaIII CATG 2 cut(s) 93, 309
NlaIV GGNNCC 2 cut(s) 6, 148
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 4 cut(s) 43, 46, 49, 235
PleI GAGTC 2 cut(s) 52, 61
PpsI GAGTC 2 cut(s) 52, 61
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 6, 148
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 4 cut(s) 42, 45, 48, 234
Sau3AI GATC 2 cut(s) 198, 281
SchI GAGTC 2 cut(s) 52, 62
ScrFI CCNGG 2 cut(s) 86, 144
SetI ASST 3 cut(s) 40, 109, 229
Sse9I AATT 2 cut(s) 79, 297
SsiI CCGC 5 cut(s) 42, 45, 48, 69, 234
StyD4I CCNGG 2 cut(s) 84, 142
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 4 cut(s) 56, 201, 243, 284
TasI AATT 2 cut(s) 79, 297
TauI GCSGC 4 cut(s) 44, 47, 50, 236
TscAI CASTG 2 cut(s) 172, 181
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 2 cut(s) 91, 106
TspRI CASTG 2 cut(s) 172, 181
Tth111I GACNNNGTC 1 cut(s) 61
XceI RCATGY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.