Rh2BG285800

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011998
Physical Location & Seq
Forward (+)
31400886 .. 31402760
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG285800.1

Sequence Viewer

Length: 387 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCCGCCGCCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCGTGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTGCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGGTTTTAGGTGTAAAAAGAAGGCAGGTTTCTATTGGATGTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTAGAGGAGATGACACTACAAAGTGTTTTTGACATTCTGGAGAGAGCTTCAAAGTGCAGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

128

Amino Acids

13.3

Weight (kDa)

9.07

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 38 - 109 9.1e-21 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 50
AciI CCGC 4 cut(s) 39, 42, 63, 228
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 1 cut(s) 372
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 221, 368
AluI AGCT 2 cut(s) 221, 368
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 2 cut(s) 24, 30
ApeKI GCWGC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 112
BccI CCATC 3 cut(s) 125, 131, 164
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 3 cut(s) 42, 228, 379
BlsI GCNGC 3 cut(s) 43, 229, 380
Bme1390I CCNGG 2 cut(s) 80, 138
BmiI GGNNCC 2 cut(s) 6, 142
BmrFI CCNGG 2 cut(s) 80, 138
BpmI CTGGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 123, 293
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 97, 341
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 2 cut(s) 26, 32
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 2 cut(s) 26, 32
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 4 cut(s) 39, 42, 63, 228
BspANI GGCC 2 cut(s) 26, 32
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 6, 142
BspMI ACCTGC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 123, 293
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 38, 227
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 78, 136
BsuRI GGCC 2 cut(s) 26, 32
BtsCI GGATG 2 cut(s) 123, 293
BtsIMutI CAGTG 2 cut(s) 159, 175
BveI ACCTGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 383
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 8 cut(s) 5, 26, 32, 136, 141, 221, 294, 368
CviKI_1 RGCY 8 cut(s) 5, 26, 32, 136, 141, 221, 294, 368
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 1 cut(s) 385
FauI CCCGC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 42, 228, 379
FokI GGATG 2 cut(s) 110, 300
Fsp4HI GCNGC 3 cut(s) 42, 228, 379
GlaI GCGC 1 cut(s) 382
GluI GCNGC 3 cut(s) 42, 228, 379
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 2 cut(s) 26, 32
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 47, 52
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 303, 359
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 2 cut(s) 116, 200
HpyAV CCTTC 2 cut(s) 10, 264
HpyCH4V TGCA 3 cut(s) 190, 206, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 227
HpyF3I CTNAG 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 10, 98, 146
LpnPI CCDG 7 cut(s) 21, 93, 123, 150, 216, 260, 344
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 73
MlyI GAGTC 2 cut(s) 46, 56
MnlI CCTC 7 cut(s) 70, 111, 115, 118, 163, 169, 319
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 80, 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 38, 227
NciI CCSGG 1 cut(s) 80
NdeII GATC 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 6, 142
NmeAIII GCCGAG 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 43, 229, 380
PleI GAGTC 2 cut(s) 46, 55
PpsI GAGTC 2 cut(s) 46, 55
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 6, 142
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SalI GTCGAC 1 cut(s) 49
SatI GCNGC 3 cut(s) 42, 228, 379
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 2 cut(s) 46, 56
ScrFI CCNGG 2 cut(s) 80, 138
SetI ASST 6 cut(s) 103, 223, 262, 279, 315, 370
Sse9I AATT 1 cut(s) 73
SsiI CCGC 4 cut(s) 39, 42, 63, 228
StyD4I CCNGG 2 cut(s) 78, 136
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 50, 195, 237
TasI AATT 1 cut(s) 73
TauI GCSGC 2 cut(s) 44, 230
TscAI CASTG 2 cut(s) 166, 175
TseI GCWGC 1 cut(s) 378
TspGWI ACGGA 2 cut(s) 85, 100
TspRI CASTG 2 cut(s) 166, 175
Tth111I GACNNNGTC 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.