Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000373.1

Orthogroup ID

OG0011998

Physical Location & Seq

Genomic Coordinates Reverse (-)

111441 .. 114924

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000373.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggctccagcgaagaagggaaaggccaaggccaaacctgccgccgccgccgccgagtcgactcagtcctccgctaccaacaatttcccggcatgtattcgctccgtacctccctcctccgtcgccatcaccatccacgccaagcctggctccaaactcgcctccatcactgatttcagtgatgaggcgttgggtgtgcagatcgacgcccctgcaaaggacggcgaagctaacgccgccctactcgactacattagttcgaagccgaacgaaatcatgctccagcggaaatcagggaccggtgctggaatctcattttcagatgcgaaggacggcggcgtcagctacaatgctcccagctacgcgctcaatttcgacaacgacaccacatgcgtcgacgacatcctcctccgattgcagctgtcgggcttcgcttcctggagtctgaccccgccagagaagttgaccacgagctggcgtattctggacgacgttctagaggaagatgaggacaaccggagctggaggtcatcgacgaggaacaaagctggagcaacaaggcttctcttcggcgagattgtccggccaacgctgagcttctctacgcaatcgtcaattgctgctgaggaagagcttccgacgtcaaagaggttattcgtcggcgacgccatgtatgacaaccacgacgagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

231

Amino Acids

24.69

Weight (kDa)

5.06

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49170
fragaria_vesca	FvH4_1g23360 FvH4_1g23360 FvH4_1g23360
malus_domestica	MD05G1015900.v1.1
prunus_persica	Prupe.6G164500_v2.0.a1 Prupe.6G165000_v2.0.a1 Prupe.6G165000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118261
rosa_laevigata	RLG00000018406
rosa_multiflora	Rmu_sc0000373.1_g000022 Rmu_sc0008451.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125040 Rroxscaffold_2G00125700
rosa_rugosa	Rorug02G0217400
rosa_samantha	Rh2AG273600 Rh2BG285800 Rh2DG281600
rosa_wichuraiana	Rw2G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AatII	GACGTC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccI	GTMKAC	2 cut(s)	59, 396
AccII	CGCG	1 cut(s)	365
AciI	CCGC	9 cut(s)	42, 45, 48, 51, 72, 237, 286, 336, 452
AcoI	YGGCCR	1 cut(s)	584
AcyI	GRCGYC	4 cut(s)	207, 339, 641, 666
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	217, 474
AgeI	ACCGGT	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	145, 437
AluBI	AGCT	9 cut(s)	230, 345, 360, 421, 474, 522, 548, 597, 634
AluI	AGCT	9 cut(s)	230, 345, 360, 421, 474, 522, 548, 597, 634
AoxI	GGCC	3 cut(s)	24, 30, 584
ApeKI	GCWGC	2 cut(s)	418, 620
AsiGI	ACCGGT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	469
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	430, 607
BccI	CCATC	3 cut(s)	134, 140, 173
BceAI	ACGGC	2 cut(s)	238, 349
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	147, 439
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	8 cut(s)	42, 45, 48, 51, 237, 337, 419, 621
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	8 cut(s)	43, 46, 49, 52, 238, 338, 420, 622
Bme1390I	CCNGG	3 cut(s)	89, 147, 439
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	6, 151, 298
BmrFI	CCNGG	3 cut(s)	89, 147, 439
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	4 cut(s)	266, 460, 544, 570
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	4 cut(s)	207, 339, 641, 666
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	299, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 474
Bse118I	RCCGGY	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	147, 439
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	132, 402
BseLI	CCNNNNNNNGG	2 cut(s)	217, 474
BseMII	CTCAG	3 cut(s)	77, 584, 615
BseRI	GAGGAG	2 cut(s)	106, 398
BseXI	GCAGC	2 cut(s)	430, 607
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	26, 32, 586
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	89, 300, 517, 583
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	217, 474
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	26, 32, 586
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	201
Bsp1720I	GCTNAGC	1 cut(s)	593
BspACI	CCGC	9 cut(s)	42, 45, 48, 51, 72, 237, 286, 336, 452
BspANI	GGCC	3 cut(s)	26, 32, 586
BspCNI	CTCAG	3 cut(s)	76, 585, 616
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	6, 151, 298
BspMI	ACCTGC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	4 cut(s)	207, 339, 641, 666
BssSI	CACGAG	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	469
Bst2UI	CCWGG	2 cut(s)	147, 439
Bst6I	CTCTTC	2 cut(s)	572, 624
BstACI	GRCGYC	4 cut(s)	207, 339, 641, 666
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	3 cut(s)	63, 593, 624
BstF5I	GGATG	2 cut(s)	132, 402
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 47, 50, 236, 342
BstNI	CCWGG	2 cut(s)	147, 439
BstNSI	RCATGY	2 cut(s)	96, 393
BstSCI	CCNGG	3 cut(s)	87, 145, 437
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	430, 607
BsuRI	GGCC	3 cut(s)	26, 32, 586
BtsCI	GGATG	2 cut(s)	132, 402
BtsIMutI	CAGTG	2 cut(s)	168, 184
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	476
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	297
CseI	GACGC	4 cut(s)	215, 328, 382, 674
Csp6I	GTAC	1 cut(s)	107
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	4 cut(s)	93, 277, 390, 670
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	63, 593, 624
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	572, 624
EarI	CTCTTC	2 cut(s)	572, 624
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	145, 437
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	96, 280, 393, 673
FaiI	YATR	5 cut(s)	94, 278, 391, 671, 675
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	92, 276, 389, 669
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	2 cut(s)	59, 396
Fnu4HI	GCNGC	8 cut(s)	42, 45, 48, 51, 237, 337, 419, 621
FokI	GGATG	2 cut(s)	119, 389
Fsp4HI	GCNGC	8 cut(s)	42, 45, 48, 51, 237, 337, 419, 621
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	8 cut(s)	42, 45, 48, 51, 237, 337, 419, 621
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	4 cut(s)	266, 460, 544, 570
HaeIII	GGCC	3 cut(s)	26, 32, 586
HapII	CCGG	4 cut(s)	89, 300, 517, 583
HgaI	GACGC	4 cut(s)	215, 328, 382, 674
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	4 cut(s)	207, 339, 641, 666
Hin1II	CATG	4 cut(s)	96, 280, 393, 673
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	3 cut(s)	60, 397, 465
HindII	GTYRAC	3 cut(s)	60, 397, 465
HinfI	GANTC	4 cut(s)	56, 61, 309, 442
HpaII	CCGG	4 cut(s)	89, 300, 517, 583
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	3 cut(s)	60, 397, 465
Hpy188I	TCNGA	4 cut(s)	322, 413, 447, 639
Hpy188III	TCNNGA	2 cut(s)	485, 497
Hpy8I	GTNNAC	3 cut(s)	60, 397, 465
HpyAV	CCTTC	2 cut(s)	10, 322
HpyCH4IV	ACGT	2 cut(s)	492, 641
HpyCH4V	TGCA	3 cut(s)	199, 215, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 47, 50, 236, 342
HpyF3I	CTNAG	3 cut(s)	63, 593, 624
HpySE526I	ACGT	2 cut(s)	492, 641
Hsp92I	GRCGYC	4 cut(s)	207, 339, 641, 666
Hsp92II	CATG	4 cut(s)	96, 280, 393, 673
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	201
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	7 cut(s)	10, 107, 155, 285, 358, 519, 551
Lsp1109I	GCAGC	2 cut(s)	430, 607
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	2 cut(s)	492, 641
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	25, 515, 559, 641
MfeI	CAATTG	1 cut(s)	615
MluCI	AATT	3 cut(s)	82, 370, 615
MlyI	GAGTC	3 cut(s)	55, 65, 451
MmeI	TCCRAC	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	633
MspA1I	CMGCKG	2 cut(s)	286, 421
MspI	CCGG	4 cut(s)	89, 300, 517, 583
MspR9I	CCNGG	3 cut(s)	89, 147, 439
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	147, 439
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	5 cut(s)	38, 47, 50, 236, 342
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	4 cut(s)	96, 280, 393, 673
NlaIV	GGNNCC	3 cut(s)	6, 151, 298
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	2 cut(s)	96, 393
NspV	TTCGAA	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	474
PfoI	TCCNGGA	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	8 cut(s)	43, 46, 49, 52, 238, 338, 420, 622
PleI	GAGTC	3 cut(s)	55, 64, 450
PpsI	GAGTC	3 cut(s)	55, 64, 450
Psp6I	CCWGG	2 cut(s)	145, 437
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	145, 437
PspN4I	GGNNCC	3 cut(s)	6, 151, 298
PspPI	GGNCC	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SalI	GTCGAC	2 cut(s)	58, 395
SapI	GCTCTTC	1 cut(s)	624
SatI	GCNGC	8 cut(s)	42, 45, 48, 51, 237, 337, 419, 621
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	3 cut(s)	55, 65, 451
ScrFI	CCNGG	3 cut(s)	89, 147, 439
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	260
SgrDI	CGTCGACG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	3 cut(s)	82, 370, 615
SsiI	CCGC	9 cut(s)	42, 45, 48, 51, 72, 237, 286, 336, 452
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	87, 145, 437
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	495, 644
TaqI	TCGA	7 cut(s)	59, 204, 246, 260, 375, 396, 533
TasI	AATT	3 cut(s)	82, 370, 615
TauI	GCSGC	6 cut(s)	44, 47, 50, 53, 239, 339
TfiI	GAWTC	1 cut(s)	309
TscAI	CASTG	2 cut(s)	175, 184
TseI	GCWGC	2 cut(s)	418, 620
TspGWI	ACGGA	2 cut(s)	94, 109
TspRI	CASTG	2 cut(s)	175, 184
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	297
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	2 cut(s)	96, 393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	2 cut(s)	59, 396
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	497
ZraI	GACGTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.